Scl29 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Scl29 (Serum cholesterol level QTL 29) Rattus norvegicus

Symbol: Scl29
Name: Serum cholesterol level QTL 29
RGD ID: 1354632
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: serum total cholesterol level   (CMO:0000363)    
LOD Score: 3.74
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2635,098,709 - 71,636,405RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0637,608,980 - 75,023,446RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0650,735,827 - 84,567,936RGDRnor5.0
RGSC_v3.4635,883,625 - 74,436,995RGDRGSC3.4
RGSC_v3.1635,886,800 - 74,440,121RGD
Cross Type: Not Available
Strains Crossed: OLETF F344/NRrrc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition
fasting  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain
F344/NRrrc  (IEA)
OLETF  (IEA)

References

References - curated
1. Ogino T, etal., Mamm Genome 2003 Dec;14(12):839-44.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1305961CyriaCYFIP related Rac1 interactor A63504520835150669Rat
2322296LOC100360357cytochrome c oxidase, subunit VIIc-like63532699535327273Rat
1565679RGD1565679similar to 60S ribosomal protein L27a (L29)63550130035501734Rat
11423259LOC10835120140S ribosomal protein S15a pseudogene63553599935536604Rat
11364133Trnav-uac3transfer RNA valine (anticodon UAC) 363558021135580283Rat
41335282LOC120093419small nucleolar RNA SNORA1563559727935597405Rat
1584995MycnMYCN proto-oncogene, bHLH transcription factor63571776435723590Rat
9410455LOC10369261140S ribosomal protein S16-like63573100135731699Rat
619903Ddx1DEAD-box helicase 163599646936027340Rat
1585140NbasNBAS subunit of NRZ tethering complex63604835736353206Rat
11488723LOC108351202ferritin light chain 1 pseudogene63614641136147701Rat
41070163LOC120103514uncharacterized LOC12010351463621250936215589Rat
41388044LOC120103515uncharacterized LOC12010351563638231536391016Rat
7549521LOC102548773uncharacterized LOC10254877363639124136425346Rat
1585125LOC690088similar to mortality factor 4 like 163658836636589355Rat
11498460LOC108351358uncharacterized LOC10835135863666987836810264Rat
1305779Lratd1LRAT domain containing 163691696936922143Rat
41193422LOC120103516glyceraldehyde-3-phosphate dehydrogenase-like63695656836962185Rat
2319366LOC100361808F-box and WD repeat domain containing 2-like63721253737214363Rat
7715436LOC102555226uncharacterized LOC10255522663741567537435927Rat
11498435LOC108351205uncharacterized LOC10835120563750642637610011Rat
41258020LOC120103517uncharacterized LOC12010351763761035837694325Rat
11377656LOC108351206uncharacterized LOC10835120663764487437720487Rat
1584006LOC690166similar to Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1)63785599437858259Rat
41075541NEWGENE_40964986transfer RNA alanine (anticodon GGC)63795137037951450Rat
1583858LOC298902similar to thymine DNA glycosylase isoform 263805055838051737Rat
7515781LOC102556604uncharacterized LOC10255660463823057338279335Rat
7557098LOC102555705uncharacterized LOC10255570563832785338348255Rat
41343564LOC120103518uncharacterized LOC12010351863851558538519218Rat
1564451Trib2tribbles pseudokinase 263854597138570349Rat
7657676LOC102555864uncharacterized LOC10255586463872202838728847Rat
7500641LOC102555927uncharacterized LOC10255592763877891638822800Rat
2321713LOC100360644ribosomal protein L11-like63892067338921200Rat
40932412LOC120093236uncharacterized LOC12009323663918573239186930Rat
7501955LOC102550954uncharacterized LOC10255095463925363339290633Rat
1307646Lpin1lipin 163930919839417034Rat
70962Ntsr2neurotensin receptor 263942429739431015Rat
1564091Greb1growth regulating estrogen receptor binding 163944052239562364Rat
631412E2f6E2F transcription factor 663959222439608685Rat
3590Rock2Rho-associated coiled-coil containing protein kinase 263967911639774033Rat
1306818Slc66a3solute carrier family 66 member 363977480139786554Rat
1582838LOC690276hypothetical protein LOC69027663979091339797066Rat
631414Kcnf1potassium voltage-gated channel modifier subfamily F member 163996230139964979Rat
628688Pdia6protein disulfide isomerase family A, member 664006298040080223Rat
1359430Atp6v1c2ATPase H+ transporting V1 subunit C264008054540144199Rat
1359447Nol10nucleolar protein 1064014421740225353Rat
1561890RGD1561890similar to craniofacial development protein 164025471740255884Rat
1597342LOC690346hypothetical protein LOC69034664027018740271205Rat
3227Odc1ornithine decarboxylase 164032983140336444Rat
41218949LOC120093421small nucleolar RNA SNORA42/SNORA80 family64033114340331276Rat
7505429LOC102551312uncharacterized LOC10255131264034487840350097Rat
41299246NEWGENE_40933816transfer RNA valine (anticodon AAC)64041593840416018Rat
41314300LOC120093237prothymosin alpha-like64042091940423313Rat
40979901LOC12009323860S ribosomal protein L35-like64042359440425165Rat
708375Hpcal1hippocalcin-like 164047818240584721Rat
1305263Asap2ArfGAP with SH3 domain, ankyrin repeat and PH domain 264065820140821017Rat
41082662LOC120093281U6 spliceosomal RNA64072761140727717Rat
1307810Itgb1bp1integrin subunit beta 1 binding protein 164082069340836074Rat
1305767Cpsf3cleavage and polyadenylation specific factor 364083612140864129Rat
41210651LOC120093425small nucleolar RNA SNORA2164083772240837850Rat
727866Iah1isoamyl acetate hydrolyzing esterase 164086553040872747Rat
620404Adam17ADAM metallopeptidase domain 1764087293640920700Rat
41040147LOC120093315U6 spliceosomal RNA64090153440901635Rat
41197514LOC1200932755S ribosomal RNA64092292240923040Rat
3979Ywhaqtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta64093571440966240Rat
41212235LOC120093176ragulator complex protein LAMTOR4-like64094746740956705Rat
41194156LOC120093239high mobility group protein B3-like64104322541044515Rat
1596058Taf1bTATA-box binding protein associated factor, RNA polymerase I subunit B64111698041194593Rat
7731406LOC102555986RNA-binding protein 34-like64115112341153682Rat
1305735Grhl1grainyhead-like transcription factor 164120732541257516Rat
1306646Klf11Kruppel-like factor 1164128569941297548Rat
1596023Cys1cystin 164130083641318071Rat
1598310Rrm2ribonucleotide reductase regulatory subunit M264133985841346774Rat
41153839LOC120093240uncharacterized LOC12009324064137743241380036Rat
1305798Mboat2membrane bound O-acyltransferase domain containing 264147113541597599Rat
619949Kidins220kinase D-interacting substrate 22064161820741706990Rat
41007282LOC120093241ubiquinol-cytochrome-c reductase complex assembly factor 3-like64172531141725677Rat
2859Id2inhibitor of DNA binding 264174055641742393Rat
7526561LOC102553989uncharacterized LOC10255398964182949241855070Rat
9103871LOC103692605uncharacterized LOC10369260564190566341914487Rat
9329158LOC103692613NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5-like64193110841931448Rat
7629645LOC102554202uncharacterized LOC10255420264194571541969352Rat
7536096LOC102557053uncharacterized LOC10255705364204746342118475Rat
41346264LOC120093242uncharacterized LOC12009324264226566942283040Rat
41088761LOC120093243uncharacterized LOC12009324364240591042411124Rat
1583774LOC366583similar to D-3-phosphoglycerate dehydrogenase (3-PGDH)64273609142737499Rat
1561737Rnf144aring finger protein 144A64289976743019769Rat
620495Rsad2radical S-adenosyl methionine domain containing 264304651443059737Rat
1305881Cmpk2cytidine/uridine monophosphate kinase 264307370643085183Rat
11370295LOC108351213uncharacterized LOC10835121364322425643252067Rat
6501114LOC100909845phosphoglycerate mutase 1-like64346571843466451Rat
11384778LOC108351214uncharacterized LOC10835121464368784743709249Rat
2318102LOC100362486small nuclear ribonucleoprotein D364380570943825284Rat
69351Sox11SRY-box transcription factor 1164400833344010354Rat
2324519LOC100362535ubiquitin-conjugating enzyme E2E 164412500944125650Rat
41387415LOC120093459small nucleolar RNA SNORA1764430255644302686Rat
9422695LOC103692606uncharacterized LOC10369260664449376444498160Rat
11407553LOC108351362uncharacterized LOC10835136264456576444570039Rat
41264357LOC120093466small nucleolar RNA SNORA1764468879444688925Rat
41262445LOC120093439small nucleolar RNA SNORA1764494854344948677Rat
41119779LOC120093290U6 spliceosomal RNA64499053644990642Rat
2322612LOC100363637nucleophosmin 1-like64507348145074670Rat
1564913Akr1b1-ps1aldo-keto reductase family 1, member B1 (aldose reductase), pseudogene 164508971745090928Rat
1559651Dcdc2cdoublecortin domain containing 2C64510383845179040Rat
621804Allcallantoicase64517918145214275Rat
41178284LOC120093293U6 spliceosomal RNA64520744745207550Rat
1309678Colec11collectin sub-family member 1164522397445256640Rat
61907Rps7ribosomal protein S764526620045271064Rat
1309012Rnaseh1ribonuclease H164528284945292258Rat
727828Adi1acireductone dioxygenase 164530688545313847Rat
1566054Trappc12trafficking protein particle complex subunit 1264532149645386967Rat
1305817Eipr1EARP complex and GARP complex interacting protein 164538845145502089Rat
7747059LOC102555103uncharacterized LOC10255510364580665345830237Rat
7502861LOC102555048uncharacterized LOC10255504864583490845923094Rat
7690279LOC102554981uncharacterized LOC10255498164609135246111068Rat
620550Myt1lmyelin transcription factor 1-like64616474246564234Rat
1560694Pxdnperoxidasin64658074946658345Rat
3900Tpothyroid peroxidase64669840246768199Rat
1311276Sntg2syntrophin, gamma 264680137747003424Rat
1596936LOC678748similar to peroxiredoxin 164706871847072828Rat
41273085LOC120103519uncharacterized LOC12010351964718482147207414Rat
1359389Tmem18transmembrane protein 1864720684547214294Rat
1587117Alkal2ALK and LTK ligand 264749564547505235Rat
2020Acp1acid phosphatase 164750638047522021Rat
1306440Sh3yl1SH3 and SYLF domain containing 164752209847565858Rat
1585983LOC679605similar to HIRA interacting protein 364757559047578182Rat
40977559LOC120093438small nucleolar RNA SNORA1764762512447625256Rat
1564713Fam110cfamily with sequence similarity 110, member C64763846647644723Rat
41147221LOC120093246laminin subunit beta-4-like64769733747811453Rat
9288946LOC103692609serine palmitoyltransferase small subunit A pseudogene64781087547812735Rat
1306311Lamb1laminin subunit beta 164783549247902585Rat
735073Dlddihydrolipoamide dehydrogenase64790415347924814Rat
620623Slc26a3solute carrier family 26 member 364802389248064829Rat
1310703Cbll1Cbl proto-oncogene like 164807119048086174Rat
7499548LOC102555378uncharacterized LOC10255537864808541548115642Rat
3293Slc26a4solute carrier family 26 member 464810757548153762Rat
41012694LOC120103520uncharacterized LOC12010352064813883748147092Rat
11449637LOC108351219uncharacterized LOC10835121964815399448168408Rat
11492151LOC108351220uncharacterized LOC10835122064816873748174227Rat
1359431Bcap29B-cell receptor-associated protein 2964818270248222698Rat
41144586LOC120093200uncharacterized LOC12009320064822301948238183Rat
1311445Dus4ldihydrouridine synthase 4-like64822811148242553Rat
1563296Cog5component of oligomeric golgi complex 564824247048545185Rat
1310848Gpr22G protein-coupled receptor 2264830961948317864Rat
620444Hbp1HMG-box transcription factor 164852963348555775Rat
7663848LOC10255564560S ribosomal protein L18a-like64854389348544447Rat
3394Prkar2bprotein kinase cAMP-dependent type II regulatory subunit beta64856365948653933Rat
41021534LOC120093368U1 spliceosomal RNA64866660248666749Rat
1306468Pik3cgphosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma64876677848802098Rat
41158901LOC120103521uncharacterized LOC12010352164878218648787040Rat
2320310LOC100361355hypothetical LOC10036135564887518648877852Rat
41344174LOC120093495U4 spliceosomal RNA64895729148957480Rat
1560812Ccdc71lcoiled-coil domain containing 71-like64895991348964112Rat
2321896LOC100360561Nxt2 protein-like64901409149014679Rat
11468726LOC108351221uncharacterized LOC10835122164903314549287627Rat
1598099LOC679971similar to carbonic anhydrase 1364939618149396963Rat
40944820LOC120093433small nucleolar RNA SNORA4864941353149413674Rat
631365Namptnicotinamide phosphoribosyltransferase64942531649462109Rat
41143542LOC120093248meteorin-like protein64954253649543619Rat
41201218LOC120093249coiled-coil domain-containing protein 69-like64954363749544171Rat
41060377LOC120103415protein HEXIM2-like64954466449545948Rat
7542438LOC102547473uncharacterized LOC10254747364955278549565067Rat
1359569Sypl1synaptophysin-like 164956511149585205Rat
41266620LOC120093480U6atac minor spliceosomal RNA64960520949605327Rat
1591286Cdhr3cadherin-related family member 364964183349702016Rat
7719070LOC102547703uncharacterized LOC10254770364972940349759830Rat
1305730Atxn7l1ataxin 7-like 164975987649982323Rat
7563724LOC102549100uncharacterized LOC10254910064990353049911102Rat
1307943Efcab10EF-hand calcium binding domain 1065000447950011398Rat
11378331LOC108351223uncharacterized LOC10835122365001440650029376Rat
41216074LOC12010341660S ribosomal protein L22-like 165002995150032039Rat
1307824Polr1fRNA polymerase I subunit F65005328950070514Rat
41186807LOC120093447small nucleolar RNA SNORA1765009137850091506Rat
1595482LOC680142similar to translocase of outer mitochondrial membrane 70 homolog A65012491150127154Rat
6486238LOC10091255640S ribosomal protein SA-like65014805050149675Rat
41134593LOC120093452small nucleolar RNA SNORA1765017897850179105Rat
11406804LOC10835133160S ribosomal protein L24 pseudogene65027803950283600Rat
1595449LOC680175similar to 40S ribosomal protein S2065063628350636717Rat
1311812Ferd3lFer3-like bHLH transcription factor65064537950646268Rat
41169746LOC120103417peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like65064794850648344Rat
621455Twist1twist family bHLH transcription factor 165067491050676904Rat
41104462LOC120093244uncharacterized LOC12009324465074508650754911Rat
1594139LOC680293similar to developmental pluripotency associated 4 isoform 165074524350745986Rat
1310748Hdac9histone deacetylase 965076207451624311Rat
40966473LOC120093437small nucleolar RNA SNORA1765161246051612591Rat
1306328Prps1l1phosphoribosyl pyrophosphate synthetase 1-like 165168496051686650Rat
1309778Snx13sorting nexin 1365175825851862260Rat
1592964LOC680365similar to tumor rejection antigen gp9665201194452016665Rat
41220337LOC120093245uncharacterized LOC12009324565202036452038707Rat
2074Ahraryl hydrocarbon receptor65223408952271568Rat
7734313LOC102554773uncharacterized LOC10255477365227207752308265Rat
1598279LOC366601similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)65235656352357905Rat
1565406Agr3anterior gradient 3, protein disulphide isomerase family member65264339152666638Rat
41101643LOC120103522glyceraldehyde-3-phosphate dehydrogenase-like65268183352686334Rat
1304606Agr2anterior gradient 2, protein disulphide isomerase family member65270860252729378Rat
1311788Tspan13tetraspanin 1365273874852765503Rat
41071680LOC120103523uncharacterized LOC12010352365274945052765273Rat
621507Bzw2basic leucine zipper and W2 domains 265282806952888599Rat
1306017Ankmy2ankyrin repeat and MYND domain containing 265288896352930341Rat
7502513LOC102556505non-POU domain-containing octamer-binding protein-like65290116152904787Rat
1560395Lrrc72leucine rich repeat containing 7265293538752995552Rat
41110432LOC120093177protein max-like65294876252950726Rat
11382383LOC10835133240S ribosomal protein S26-like65298065552996561Rat
628877Sostdc1sclerostin domain containing 165305133653055510Rat
41059523LOC120093435small nucleolar RNA SNORA4865307013453070273Rat
40986010LOC120093463small nucleolar RNA SNORA1765311671453116830Rat
1359368CrppaCDP-L-ribitol pyrophosphorylase A65312026453397030Rat
9299213LOC103692610coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial pseudogene65330935553311115Rat
11479069LOC108351226uncharacterized LOC10835122665362952753640141Rat
40964578LOC120093123heterogeneous nuclear ribonucleoprotein A1-like65369794153700119Rat
2324155LOC100362703heterogeneous nuclear ribonucleoprotein A1-like65372363653732973Rat
41195695LOC120093493small nucleolar RNA U365380824353808325Rat
3079Meox2mesenchyme homeobox 265385676053917467Rat
2319740LOC100361632hypothetical LOC10036163265395086753951745Rat
1312038Agmoalkylglycerol monooxygenase65398623654317838Rat
41165480LOC120093298U6 spliceosomal RNA65422698154227085Rat
11398630LOC108351227uncharacterized LOC10835122765434308154383179Rat
11518989LOC108351363uncharacterized LOC10835136365438326654384851Rat
1563613RGD1563613similar to 40S ribosomal protein S2565452133554521746Rat
2488Dgkbdiacylglycerol kinase, beta65464094855397210Rat
7669283LOC102549779actin, cytoplasmic 2-like65472120154722310Rat
9263034LOC103692620thyroid hormone receptor-associated protein 3 pseudogene65483121154835676Rat
2323883LOC100362896prostatic binding protein-like65554026455540821Rat
1312007Etv1ETS variant transcription factor 165559014955681784Rat
41312804LOC12010341860S acidic ribosomal protein P0-like65568605455686977Rat
41157524LOC120103524uncharacterized LOC12010352465595678756049486Rat
41034983LOC120093442small nucleolar RNA SNORA1765639963256399763Rat
2323695LOC100362999hsc70-interacting protein-like65643522256436810Rat
1305611Smarce1lSWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1-like65650447856505695Rat
41392365LOC120093451small nucleolar RNA SNORA1765658492756585050Rat
41025079LOC120093443U2 spliceosomal RNA65660011356600288Rat
41252109LOC120103419uncharacterized LOC12010341965662851656640670Rat
41263556LOC120093490U2 spliceosomal RNA65662950456629658Rat
1560073RGD1560073similar to ribosomal protein S1065666910356669605Rat
40972876LOC12009324760S ribosomal protein L29-like65688837256888994Rat
1588211LOC680755similar to B-cell receptor-associated protein 3765698154956986759Rat
2152Arl4aADP-ribosylation factor like GTPase 4A65707949657084156Rat
7630539LOC102551566uncharacterized LOC10255156665708443557089606Rat
735034Scinscinderin65711012857188059Rat
1587073Lsmem1leucine-rich single-pass membrane protein 165725022157262240Rat
2867Ifrd1interferon-related developmental regulator 165726939557317833Rat
1583856Zfp277zinc finger protein 27765738394457512785Rat
41008057LOC120093202uncharacterized LOC12009320265750914557509600Rat
1561724Dock4dedicator of cytokinesis 465751292957902597Rat
40999746LOC120093201uncharacterized LOC12009320165753973457559955Rat
9392136LOC103692617transcription elongation factor B polypeptide 1 pseudogene65793654257936849Rat
2323665Immp2linner mitochondrial membrane peptidase subunit 265807003558970165Rat
2323872LOC100359421histone H3.3B-like65809993058101667Rat
7500279LOC102552766uncharacterized LOC10255276665815077658186306Rat
41339141LOC120093204uncharacterized LOC12009320465819694858227730Rat
40934694LOC120093461small nucleolar RNA SNORA1765839618358396315Rat
41334056LOC120093203uncharacterized LOC12009320365841472558430740Rat
71066Lrrn3leucine rich repeat neuronal 365848906058520322Rat
41268906LOC120103525uncharacterized LOC12010352565940358259425212Rat
1589745Ndufa10l1NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10-like 165987981959881252Rat
9072809LOC103692621oligosaccharyltransferase complex subunit OSTC pseudogene66043133660453277Rat
11403672LOC108351228uncharacterized LOC10835122866052476360536010Rat
41279995LOC120093283U6 spliceosomal RNA66060760760607713Rat
3070Dnajb9DnaJ heat shock protein family (Hsp40) member B966127038561276795Rat
41003040LOC120103526uncharacterized LOC12010352666127517661282214Rat
9352471LOC103692619uncharacterized LOC10369261966128222161329753Rat
1583553LOC681138similar to DnaJ (Hsp40) homolog, subfamily B, member 666129754961299049Rat
1311444Pnpla8patatin-like phospholipase domain containing 866132981061391736Rat
3209Nrcamneuronal cell adhesion molecule66140281361698536Rat
41173563LOC120093276U6 spliceosomal RNA66175955261759658Rat
1598017LOC681255similar to G patch domain containing 4 protein isoform 266180238961803939Rat
11407073LOC108351229transformer-2 protein homolog alpha pseudogene66184100361841697Rat
1598278LOC366611similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1)66184662961847912Rat
1583855LOC298990hypothetical LOC29899066186594961866939Rat
1306117Stxbp6syntaxin binding protein 666192075662157405Rat
40936444LOC120103527uncharacterized LOC12010352766199587361997541Rat
41192509LOC120093462small nucleolar RNA SNORA1766219361062193737Rat
40950765LOC120093319U7 small nuclear RNA66238648762386545Rat
41372374LOC120093491U2 spliceosomal RNA66251956662519704Rat
41379325LOC120103528glyceraldehyde-3-phosphate dehydrogenase-like66252479362525797Rat
7593102LOC102555380uncharacterized LOC10255538066252587262555470Rat
7652149LOC102555435uncharacterized LOC10255543566257374162579908Rat
9317184LOC103692627uncharacterized LOC10369262766260211862606902Rat
11450428LOC108351230uncharacterized LOC10835123066260524662616196Rat
41268372LOC120093449small nucleolar RNA SNORA1766285928762859414Rat
41195602LOC120093317small nucleolar RNA SNORA73 family66305535063055553Rat
621345Nova1NOVA alternative splicing regulator 166378010563905950Rat
41200290LOC120093485U2 spliceosomal RNA66451313164513345Rat
41328288LOC120093502U4 spliceosomal RNA66469570864695834Rat
40947446LOC120093250uncharacterized LOC12009325066474904964779502Rat
40951447LOC120103529uncharacterized LOC12010352966495868964973053Rat
7725900LOC102556158uncharacterized LOC10255615866503448965134280Rat
1598277LOC366613similar to Importin alpha-2 subunit (Karyopherin alpha-2 subunit) (SRP1-alpha) (RAG cohort protein 1) (Pendulin) (Pore targeting complex 58 kDa subunit) (PTAC58) (Importin alpha P1)66542390965426151Rat
41057606LOC120103530uncharacterized LOC12010353066546133865583973Rat
41004139LOC120093468small nucleolar RNA SNORA1766583512565835255Rat
1334065Olr873-psolfactory receptor pseudogene 87366621392966214582Rat
2320031LOC100364934Leydig cell tumor 10 kDa protein-like66633698966337899Rat
2323500LOC100359740D-3-phosphoglycerate dehydrogenase-like66664132866642516Rat
1559629RGD1559629similar to H+ ATP synthase66665418766654763Rat
2619Foxg1forkhead box G166667479766677611Rat
41172264LOC120103531uncharacterized LOC12010353166668467466685883Rat
7619249LOC102546421uncharacterized LOC10254642166668963566699336Rat
40997044LOC120093455small nucleolar RNA SNORA1766684549766845624Rat
41135267LOC120093458small nucleolar RNA SNORA1766688136966881496Rat
7627887LOC102546496uncharacterized LOC10254649666690249166930836Rat
9219694LOC103692628uncharacterized LOC10369262866696117167055411Rat
41302933LOC120103420glyceraldehyde-3-phosphate dehydrogenase-like66739692267441051Rat
620964Prkd1protein kinase D166772519368039002Rat
41257709LOC120103532uncharacterized LOC12010353266779498267868731Rat
7728058LOC102557478uncharacterized LOC10255747866844343768505774Rat
41010064LOC120093251uncharacterized LOC12009325166856912168571922Rat
41350299LOC120093284U6 spliceosomal RNA66862788368627990Rat
1310263G2e3G2/M-phase specific E3 ubiquitin protein ligase66876384768795305Rat
619828Scfd1sec1 family domain containing 166879581068874076Rat
1587060LOC680823similar to Ubiquitin-conjugating enzyme E2 I (Ubiquitin-protein ligase I) (Ubiquitin carrier protein I) (SUMO-1-protein ligase) (SUMO-1-conjugating enzyme) (Ubiquitin-conjugating enzyme UbcE2A)66880406168805440Rat
41076279LOC120103533uncharacterized LOC12010353366885816468862838Rat
2323296LOC100359846hypothetical LOC10035984666893614068948448Rat
41281687LOC120103534ADP-ribosylation factor-like protein 166895551168962169Rat
11405764LOC108351234uncharacterized LOC10835123466898468968985303Rat
1308536Cochcochlin66903113969045124Rat
621827Strn3striatin 366904777669134102Rat
1311990Ap4s1adaptor related protein complex 4 subunit sigma 166913340369174488Rat
41088753LOC120103535uncharacterized LOC12010353566916814369174099Rat
1561653Hectd1HECT domain E3 ubiquitin protein ligase 166918142969267803Rat
41293354LOC120103536uncharacterized LOC12010353666919891369201280Rat
1561116Heatr5aHEAT repeat containing 5A66932186969419861Rat
1309138Dtd2D-aminoacyl-tRNA deacylase 266945014669456430Rat
1306830Gpr33G protein-coupled receptor 3366947443569475440Rat
1307232NubplNUBP iron-sulfur cluster assembly factor like66955927869781254Rat
11440663LOC108351235tensin-2 pseudogene66959456869601783Rat
1595110LOC685338similar to longevity assurance homolog 566982385169830063Rat
1308507Arhgap5Rho GTPase activating protein 566997590470039299Rat
41103385LOC120093278U6 spliceosomal RNA67006837370068479Rat
40945147LOC120093279U6 spliceosomal RNA67006906070069166Rat
41089517LOC120093205uncharacterized LOC12009320567006935370091813Rat
69412Akap6A-kinase anchoring protein 667018410170624369Rat
7709127LOC102547662uncharacterized LOC10254766267067789370687394Rat
1307181Npas3neuronal PAS domain protein 367070277371527928Rat
41254020LOC120093508U6 spliceosomal RNA67081389370813999Rat
7629096LOC102547735uncharacterized LOC10254773567087483070899484Rat
41384656LOC120093424small nucleolar RNA SNORA2/SNORA34 family67109002471090159Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
11141D6Arb1230364865776548658068Ratregion
33977D6Mit424065773029457730540Ratregion
34072D6Mgh717764579008845790265Ratregion
37222D6Rat8221964298481642985033Ratregion
37392D6Rat9323064343264943432879Ratregion
35235D6Rat2913063813689338137023Ratregion
35338D6Rat3116264234207842342232Ratregion
35390D6Rat3614063509870935098849Ratregion
37046D6Rat5212163541471835414835Ratregion
37662D6Rat9224563967147639671747Ratregion
37704D6Rat5817865778652357786753Ratregion
37704D6Rat5817865778652357786723Ratregion
37746D6Rat9619963855205338552278Ratregion
36534D6Rat3217264164972641649891Ratregion
36560D6Rat3415063971455039714722Ratregion
36586D6Rat2614065464100154641141Ratregion
36648D7Rat3817465907619559076366Ratregion
36729D6Rat2313967163626671636405Ratregion
36787D6Rat3716763569161835691785Ratregion
35036D6Rat2412566148089561481017Ratregion
35583D6Rat5015066128390461284075Ratregion
35943D6Rat3013264737056447370696Ratregion
39848D6Rat14315863686871236868865Ratregion
39924D6Rat14120163875148238751689Ratregion
39972D6Rat13222165081844550818672Ratregion
38080D6Rat9513165289524052895390Ratregion
38220D6Rat6721364255907842559313Ratregion
38608D6Rat10614266553155565531697Ratregion
38758D6Rat8313664025737440257518Ratregion
40044D6Rat15414866261353562613667Ratregion
40240D6Rat13313764887386348873992Ratregion
38930D6Rat6124564257507842575327Ratregion
39022D6Rat6022565197672351976936Ratregion
39232D6Rat9914065652904456529174Ratregion
39340D6Rat7320066944906769449277Ratregion
39450D6Rat13824964054393340544194Ratregion
42779D6Rat22824563512897435129218Ratregion
42781D6Rat20720964156247541562698Ratregion
42782D6Rat20620564747401347474227Ratregion
42783D6Rat20514965391391853914055Ratregion
42784D6Rat20124366435743064357671Ratregion
42785D6Rat16816965617434056174415Ratregion
42786D6Rat16920266304036063040562Ratregion
42787D6Rat20211765901136759011478Ratregion
42788D6Rat20423866136247361362692Ratregion
42791D6Rat19810366725990067259987Ratregion
42792D6Rat19922366977486069775071Ratregion
41244D6Rat13515164780750247807653Ratregion
42325D6Rat22123266522321465223444Ratregion
40770D6Rat13923163963405339634300Ratregion
40770D6Rat13923163963395539634300Ratregion
41064D6Rat13419964770999047710185Ratregion
41548D6Rat13016066911642069116571Ratregion
41606D6Rat14416763521491435215248Ratregion
41606D6Rat14416763521491435215081Ratregion
41608D6Rat14227364191223241912500Ratregion
41668D6Rat17022864554687545547114Ratregion
44074D6Got5413764236768142367818Ratregion
44075D6Got5822064343660243436822Ratregion
44076D6Got5517364513215845132331Ratregion
44077D6Got6029664905541549055711Ratregion
44078D6Got6619664982631849826514Ratregion
44079D6Got6423765019586850196103Ratregion
44080D6Got618664931999349320076Ratregion
44081D6Got6318165065626050656438Ratregion
44082D6Got6513565081852050818655Ratregion
44083D6Got6825965133459251334851Ratregion
44084D6Got6217565271828052718455Ratregion
44086D6Got6917665209418652094362Ratregion
44087D6Got6713365212784352127976Ratregion
44089D6Got7011665522499255225108Ratregion
44090D6Got7212665681194256812068Ratregion
44091D6Got7412165813703458137155Ratregion
44092D6Got7324165775583657756077Ratregion
44094D6Got7627166370286263703133Ratregion
44095D6Got7718266226831862268500Ratregion
44096D6Got8019666618874866188944Ratregion
44097D6Got7926866803086568031246Ratregion
44097D6Got7926866803086568031133Ratregion
44098D6Got8212466838305268383176Ratregion
44099D6Got8116266856820268568366Ratregion
44100D6Got9022767027725770277484Ratregion
44103D6Got9122267033069070330909Ratregion
44105D6Got8810767068487670684985Ratregion
44106D6Got8715467156001271560166Ratregion
44059D6Got3825763562070035620954Ratregion
44061D6Got3924763747429237474539Ratregion
44063D6Got3421863537535635375576Ratregion
44064D6Got3313863562072635620864Ratregion
44065D6Got4215063869622538696375Ratregion
44066D6Got4822663999081339991039Ratregion
44067D6Got4911864058269140582809Ratregion
44068D6Got5016164083215440832315Ratregion
44069D6Got5220864098285640983064Ratregion
44070D6Got19923264107509741075329Ratregion
44073D6Got5729464413207044132364Ratregion
60536D6Got3712963688572536885854Ratregion
60539D6Got4320163850625738506458Ratregion
60540D6Got4423763952980639530031Ratregion
60542D6Got4620463957175439571957Ratregion
60544D6Got5124264174835841748602Ratregion
60545D6Got5624064229693942297179Ratregion
60546D6Got5919964234734642347545Ratregion
60429D4Got14714664995905149959119Ratregion
69535D6Uwm314565669615656696289Ratregion
625778D6Got8918666994475369944939Ratregion
62501D6Uia335064485714644857495Ratregion
67223D6Arb1111265485613254856244Ratregion
67229D6Arb2124263594302235943264Ratregion
67277D6Arb836064033503740335394Ratregion
1631403D6Got31618364456250144562684Ratregion
1628178D6Got31811865371753653717654Ratregion
1629633D6Got30911064236533342365443Ratregion
1639193D6Wox247564033516540335238Ratregion
1639610D6Got30325764337873943378996Ratregion
1638211D6Wox3618767061943170619618Ratregion
7193004Etv149165559124855591739Ratregion
7193005Foxg139666667626366676659Ratregion
5036187RH12584224565012497850125223Ratregion
5038836RH12736018664008066640081020Ratregion
7206578UniSTS:5471496064400887344008933Ratregion
5039158RH12754520665539685255397058Ratregion
5036454Prkcm20666772579967726005Ratregion
5036504Sox1173464400754844008282Ratregion
5037143RH7069815164087406240874213Ratregion
5035552MYCN72463571780735718531Ratregion
5035677HSCZSD08220864656401446564222Ratregion
5033937RH14068019565223574352235938Ratregion
5034043RH141145064289992542900140Ratregion
5034161RH14160018466938647869386662Ratregion
5028883RH14268818866668877666688964Ratregion
5026278RH13159921567141037671410591Ratregion
5028937RH14289010063691697036917070Ratregion
5028985RH14307530064082545940825759Ratregion
5031698AU04744818367030784470308027Ratregion
5034379STS-N3438912164807132948071450Ratregion
5029197RH14388517864129711441297292Ratregion
5026690RH13316321864039080040391018Ratregion
5029341RH14442715766885837068858527Ratregion
5029395RH14462817164532284645323017Ratregion
5032054AU04682410163910106339101164Ratregion
5029427Twist34065067541550675755Ratregion
5032229Y1257712465708225357082377Ratregion
5032327Etv178765567654255677329Ratregion
5029581BE10124617264308375943083931Ratregion
5029649BI27753818365294773952948041Ratregion
5029669BF38684316465095367250953836Ratregion
5035458BQ19434619164529916545299356Ratregion
5032623RH13469019767062085470621051Ratregion
5029943BF40007623565499493954995174Ratregion
5029979BF38837621364079234940792562Ratregion
5030043AW53115421063976668839766898Ratregion
5032771RH13524018366127022361270406Ratregion
5035196BM39055917063944215639442326Ratregion
5035286BF38775415066128099461281144Ratregion
5027445AW31951711663854610738546223Ratregion
5027447AV3758749264896138948961481Ratregion
5027449C853178566192083261920917Ratregion
5030217AW53235417264461426944614441Ratregion
5032981RH13719220863515615135156359Ratregion
5032991RH13721921265707941357079625Ratregion
5025098AW82363313263977370139773833Ratregion
5025100RH12680130964784877147849080Ratregion
5033319RH13840015466914249469142648Ratregion
5025334RH12791820864790481347905021Ratregion
5025386RH12811520864974440949744617Ratregion
5028009M6364918865067627550676463Ratregion
5030619BE10719317764295536642955543Ratregion
5025520RH12863718164087249040872671Ratregion
5030749BE10792715666913476369134919Ratregion
5025684RH12926015064058452140584671Ratregion
5025742RH12948420364810767048107873Ratregion
5033773RH14006819664400880744009003Ratregion
5028537AF08519216164058401340584174Ratregion
5028539AI31445812664945995849460084Ratregion
5031091BF41267918164831595448316135Ratregion
5051883RH9471318066169229261692472Ratregion
5053503RH14268613665307258453072720Ratregion
5056393RH14435214266169825961698401Ratregion
5056471RH14439715164831075148310902Ratregion
5051525AI4492608464082227840822362Ratregion
5051527AI25542814264174053941740681Ratregion
5054035RH14299321264105259141052803Ratregion
5057368Nato3-pending45365064543650645889Ratregion
5052121RH9485211364174057841740693Ratregion
5055193RH14366011164791131247911423Ratregion
5055223RH14367713166360251263602643Ratregion
5055295RH14371913764095918340959320Ratregion
5055313RH14372916664854707448547240Ratregion
5057680BE10132115667003912070039276Ratregion
5057832BF38623815265568157955681731Ratregion
5057852BF38625815365184708051847233Ratregion
5057922BF38630915365493290254933055Ratregion
5057942BF38637716666203885962039025Ratregion
5055977RH14411213664379673743796873Ratregion
5056301RH14429917964379577943795958Ratregion
5056309RH14430424464957109849571342Ratregion
5056123RH14419614564380678443806929Ratregion
5056747RH14455616765539473055394897Ratregion
5056753RH14456017364853192848532101Ratregion
5052901RH14233919764807140148071598Ratregion
5059928BE10357015767084549470845651Ratregion
5058238BF38688016863959363139593799Ratregion
5053135RH14247421865284910552849324Ratregion
5058380BG37682219465135139251351586Ratregion
5053413RH14263410766922765369227760Ratregion
5059276BF38792216664517925645179422Ratregion
5057750BF38610816365501489755015060Ratregion
5049900RH13374620265273900752739209Ratregion
5049912RH13375318964523971145239900Ratregion
7193124MYCN44663572313735723584Ratregion
5050188RH13391220864895773848957946Ratregion
5052747RH14224918066135700261357182Ratregion
5054297RH14314326463973360039733864Ratregion
5054369RH14318427066902933369029603Ratregion
5051687RH9460015864033213340332291Ratregion
5050820RH13427718764307388143074074Ratregion
5044182RH13045618663633047936330665Ratregion
5044182RH13045618663633047936330665Ratregion
5043268RH12992818464119427641194460Ratregion
5043478RH13004818363977485739775040Ratregion
5044268RH13050519163943075439430945Ratregion
5043804RH13023718764529195845292145Ratregion
5045116RH13099321964304675043046969Ratregion
5045172RH13102522064086256840862788Ratregion
5041496RH12889019864170663741706835Ratregion
5041570RH12893319666904489669045092Ratregion
5044054RH13038320163960843039608631Ratregion
5044136RH13043020065292964752929978Ratregion
5046038RH13152218864170288641703074Ratregion
5044782RH13080018064721402747214207Ratregion
5044880RH13085615164757497247575123Ratregion
5047470RH13234619365431739354317586Ratregion
5047554RH13239420363996053439960737Ratregion
5047758RH13251119267030936170309554Ratregion
5047984RH13264220166932191069322111Ratregion
5046798RH13196020263977778239777984Ratregion
5048158RH13274119664159317441593370Ratregion
5048588RH13299019863854602738546225Ratregion
5049574RH13355921464308480443085018Ratregion
5040186RH12813918664033611240336298Ratregion
5042656RH12956518166139152061391701Ratregion
5042750RH12962419163679619136796382Ratregion
5042750RH12962419163679619136796382Ratregion
5039472RH12772519464790464147904835Ratregion
5043110RH12983818065987939059879571Ratregion
5039754RH12788718663599659335996784Ratregion
7192185Sox1115164400971644009867Ratregion
5039926RH12798718964007980740079996Ratregion
5043416RH13001321064531358845313798Ratregion
5039970RH12801318064130111741301297Ratregion
7192194Foxg145566667685066677305Ratregion
5043712RH13018319664958245749583949Ratregion
5043712RH13018319664958240649583949Ratregion
5043782RH13022420565291619252916397Ratregion
5043830RH13025217565726945557269630Ratregion
5043868RH13027420865006908550069293Ratregion
5040346RH12823018665339655453396740Ratregion
5040380RH12825021464550173345501947Ratregion
5040426RH12827622066945037169450591Ratregion
5040598RH12837519864134637241346570Ratregion
5072830RH13707916466000892760009091Ratregion
5072830RH13707916466000892760009091Ratregion
5074026RH13777613364522411245224245Ratregion
5074112RH13782814764790233847902485Ratregion
5076588RH13926319264400475544004947Ratregion
5077708RH13991218064856549048565670Ratregion
5079396RH14097221464958492049585134Ratregion
5077226RH13963520366918320569183408Ratregion
5077928RH14004120564400670844006913Ratregion
5076340RH13911918364159260241592785Ratregion
5077630RH13986719064650182046502010Ratregion
5078550RH14040923566169385361694088Ratregion
5079998RH14132319767152628471526481Ratregion
5078820RH14057120864865199148652199Ratregion
5078982RH14066519565223507752235271Ratregion
5078330RH14027821766127111561271332Ratregion
5080334RH14151920364082137240821583Ratregion
5073214RH13730615063944059139440741Ratregion
5080400RH14155721866192374961923967Ratregion
5073748RH13761512363945444939454572Ratregion
5071668RH13521518165486828354868464Ratregion
5073192RH13729321664134513541345454Ratregion
5071884RH13534021665006725750067473Ratregion
5074224RH13789322966666469266664921Ratregion
5071392RH13505520265233618352336385Ratregion
5063378BI30179517565639488756395062Ratregion
5066860AU04810815266012061060120762Ratregion
5066876AU04809824166263752462637769Ratregion
5067134AU04794218165287287752873058Ratregion
5067186AU04790819064110930841109498Ratregion
5067444AU04774016664522513745225303Ratregion
5067492AU04771211564152051641520631Ratregion
5067682AU04759915364228865542288810Ratregion
5067784AU04753816465782173357821897Ratregion
5068166AU04730913065194684451946974Ratregion
5068312AU04722019863823547338235671Ratregion
5068388AU04717619963662162036621819Ratregion
5068680AU04699818964398235543982544Ratregion
5069482AU04646915163850623338506381Ratregion
5070049RH9443920065539518255395382Ratregion
5068992AU04679621964875149648753109Ratregion
5069544AU04642527365933823559338274Ratregion
5069794AU02866910765047100250471106Ratregion
5070420Foxg1100466667648666677490Ratregion
5070468AV21885914664130093641301082Ratregion
5070470AI46739113964807348548073624Ratregion
5070472AI84487613966923496669235105Ratregion
5070508AU02267320363515378335153986Ratregion
5070510D12Ertd604e22764550175145501978Ratregion
5063782AW53515315666164617261646328Ratregion
5062444BF40329221165762829257628503Ratregion
5065568BI30340818566879365968793844Ratregion
5060962BF40150617964990766449907843Ratregion
5062582BF40344618866677031066770498Ratregion
5064148BE12067318665785495157855137Ratregion
5065762BF40638622564585500845855233Ratregion
5065976BE11637315563930709539307250Ratregion
5066000BE11646517067062206870622238Ratregion
5060176BI27962721463977356139773775Ratregion
5060374AW53190515163572623735726388Ratregion
5063972BE12033117465740865257408826Ratregion
5064102BE12061316365381550953815672Ratregion
5064184BE12075015664400635744006513Ratregion
5064278BE12097617164125387841254049Ratregion
5064354BI30207320864478970644789914Ratregion
5064418BI30215417865185710751857285Ratregion
5066100BE11683818364082079640820979Ratregion
5062828AW52840020264162834541628547Ratregion
5062976BE11353016264993649049936652Ratregion
5066194BF40776524764125719941257446Ratregion
5061324BE09960917164720792447208095Ratregion
5064694BE10833915267002216870022320Ratregion
5066278PMC133998P269564174163441742329Ratregion
5066366AU04839927164621333046213605Ratregion
5063166BE10722715764790384147903998Ratregion
5064826BF4051709964073368240733781Ratregion
5061618BE10569016864159565641595824Ratregion
5086879AI22830416366906833569068498Ratregion
5082047AW25132813465075820350758337Ratregion
5082063BG37280013464082514240825276Ratregion
5082173BI28031020964817379748174006Ratregion
5086270BF4020379165381798953818080Ratregion
5087130AI23735518465294938352949578Ratregion
5087412ODC118464033283940333224Ratregion
5087628PMC85614P165364400914444009797Ratregion
5082839BF39021615266248876662488918Ratregion
5089041AU04891921567154026271540477Ratregion
5083225BI27548219766918154769181744Ratregion
5088427AU04856311665988680159886917Ratregion
5088429AU04856417863871492938715107Ratregion
5089495AU04918925966108660061086863Ratregion
5090795AU04996818365330302853303211Ratregion
5090827AU04998626767143788971438156Ratregion
5088747AU04875417065277223652772408Ratregion
5089623AU04926511763850626438506381Ratregion
5081579BE11747819764400377544003972Ratregion
5081605BE11755715064374077543740925Ratregion
5081717BF40873110764851856348518670Ratregion
5089981AU04947921963965843239658568Ratregion
5089981AU04947921963965834839659559Ratregion
5089981AU04947921963965834839658568Ratregion
5090147AU04957719064236760942367799Ratregion
5084306AA84895021264964189149642104Ratregion
5087546PMC305683P269564174163441742329Ratregion
5080980RH14189419863622163736221835Ratregion
5081044RH14193221264087299740873209Ratregion
5085153AW53328119865006777150067969Ratregion
5085318BQ20993815066772811867728268Ratregion
5090569AU04983019964581178945811988Ratregion
5090063AU04952817665630194656302122Ratregion
5090213AU04961718664912277549122961Ratregion
5089223AU04902821765501281955013036Ratregion
5081390AI45455820366133102461331227Ratregion
5085950BM38449618167030524470305425Ratregion
5080860RH14182518363691796136918144Ratregion
5080936RH14186919864308408143084279Ratregion
5084436AA8498299565186150951861604Ratregion
5082731AI57910710564022515240225257Ratregion
5086195BQ19991416965719399857194167Ratregion
5081042RH14193120766169214461692351Ratregion
5084922AI17177513163931183239311963Ratregion
5081547AW43383311063560949135609601Ratregion
5085131BQ19557417464119986641200040Ratregion
5085292AI59852416965391700853917177Ratregion
5083639BE10098615164985943149859582Ratregion
5086783BM38673118464125125141251435Ratregion
5085932BM38374917364125223941252412Ratregion
5503595UniSTS:46469211665305446053054576Ratregion
5502943Tomm70a90765012542850126335Ratregion
5503847Sostdc119865305429353054491Ratregion
5504776PMC99801P125564033232740332582Ratregion
5504901ha3186140665131026251311668Ratregion
5505357Slc26a415464813580648135960Ratregion
5505448Id212364174494041745063Ratregion
5504965Tpo148464673948946740973Ratregion
5505169Trib228163854610638546387Ratregion
5505412Ndufa1090065988017459881074Ratregion
5505674UniSTS:488924163465168497151686605Ratregion
5506086Myt1l064656094346561525Ratregion
5506409Nova154066378595563786495Ratregion
5507307fc03e11.x191767142896371429882Ratregion
5507199UniSTS:22524316966667682966676998Ratregion
5499627MARC_4117-4118:991938388:111164854418148544292Ratregion
5499671MARC_7327-7328:992008337:162265559120955591831Ratregion
5500113UniSTS:23682813764789941447899551Ratregion
5502186MARC_7649-7650:996688053:1066960056669600797Ratregion
5502573RH12541010964007523040076005Ratregion
5500442fc63b12.x1064067797040678279Ratregion
5500442fc63b12.x1064067795040678279Ratregion
5503380S0226065534932255349902Ratregion
5503538NOVA1__606561366378348363784096Ratregion
5503778UniSTS:47067645764707231447072784Ratregion
5501295D11S260514566684375066843900Ratregion
5501608RH44636066184121561841338Ratregion
5501580RH6999213164854419848544329Ratregion
5505540D2S171152764769210747693634Ratregion
5501820MARC_13945-13946:1007583817:174764975993649760683Ratregion
5507147UniSTS:22484115466772574767725901Ratregion
Position Markers

Flank 1: (D6Rat36)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2635,098,709 - 35,098,849 (+)MAPPER
Rnor_6.0637,608,980 - 37,609,119NCBI
Rnor_5.0650,735,827 - 50,735,966UniSTS
RGSC_v3.4635,883,625 - 35,883,996RGD
RGSC_v3.4635,883,847 - 35,883,986UniSTS
RGSC_v3.1635,886,800 - 35,886,939RGD
Celera634,463,599 - 34,463,738UniSTS
RH 3.4 Map6139.1UniSTS
RH 3.4 Map6139.1RGD
RH 2.0 Map6284.1RGD
FHH x ACI Map629.28RGD
Cytogenetic Map6q14UniSTS
Peak: (D6Arb12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2648,657,765 - 48,658,068 (+)MAPPER
Rnor_6.0651,360,215 - 51,360,517NCBI
Rnor_5.0660,030,865 - 60,031,167UniSTS
RGSC_v3.4650,329,130 - 50,329,432UniSTS
RGSC_v3.4650,329,129 - 50,329,432RGD
RGSC_v3.1650,332,255 - 50,332,558RGD
Celera647,859,335 - 47,859,637UniSTS
RH 3.4 Map6303.6UniSTS
RH 3.4 Map6303.6RGD
RH 2.0 Map6470.5RGD
FHH x ACI Map643.7499RGD
Cytogenetic Map6q16UniSTS
Flank 2: (D6Rat23)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2671,636,266 - 71,636,405 (+)MAPPER
Rnor_6.0675,023,308 - 75,023,446NCBI
Rnor_5.0684,567,798 - 84,567,936UniSTS
RGSC_v3.4674,436,857 - 74,436,995UniSTS
RGSC_v3.4674,436,856 - 74,436,995RGD
RGSC_v3.1674,439,982 - 74,440,121RGD
Celera670,485,804 - 70,485,940UniSTS
RH 2.0 Map6686.7RGD
SHRSP x BN Map646.6299RGD
FHH x ACI Map656.9299RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
4889848Pur25Proteinuria QTL 25140.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)66304056271636266Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Scl29

RGD Curation Notes
Note Type Note Reference
qtl_general suggestive linkage only; threshold for significant linkage was set at LOD=4.3 737686