Scl29 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Scl29 (Serum cholesterol level QTL 29) Rattus norvegicus

Symbol: Scl29
Name: Serum cholesterol level QTL 29
RGD ID: 1354632
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: serum total cholesterol level   (CMO:0000363)    
LOD Score: 3.74
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0637,608,980 - 75,023,446RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0650,735,827 - 84,567,936RGDRnor5.0
RGSC_v3.4635,883,625 - 74,436,995RGDRGSC3.4
RGSC_v3.1635,886,800 - 74,440,121RGD
Cross Type: Not Available
Strains Crossed: OLETF F344/NRrrc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition
fasting  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain
F344/NRrrc  (IEA)
OLETF  (IEA)

References

References - curated
1. Ogino T, etal., Mamm Genome 2003 Dec;14(12):839-44.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1305961CyriaCYFIP related Rac1 interactor A63755516737661196Rat
2322296LOC100360357cytochrome c oxidase, subunit VIIc-like63783258837832866Rat
1565679RGD1565679similar to 60S ribosomal protein L27a (L29)63800657138052841Rat
11423259LOC10835120140S ribosomal protein S15a pseudogene63804160638042043Rat
11364133Trnav-uac3transfer RNA valine (anticodon UAC) 363808503738085109Rat
1584995MycnMYCN proto-oncogene, bHLH transcription factor63822255438228419Rat
9410455LOC10369261140S ribosomal protein S16-like63823578738236283Rat
619903Ddx1DEAD-box helicase 163842289238453762Rat
1585140NbasNBAS subunit of NRZ tethering complex63847477338777146Rat
11488723LOC108351202ferritin light chain 1 pseudogene63857150438572788Rat
7549521LOC102548773uncharacterized LOC10254877363882286138849103Rat
11372635LOC108351203uncharacterized LOC10835120363884873638856028Rat
1585125LOC690088similar to mortality factor 4 like 163903455439035520Rat
11498460LOC108351358uncharacterized LOC10835135863911489339134890Rat
1305779Lratd1LRAT domain containing 163935828539363458Rat
9446459LOC103692600glyceraldehyde-3-phosphate dehydrogenase pseudogene63940274639403825Rat
11372644LOC108351204uncharacterized LOC10835120463950409739516217Rat
2319366LOC100361808F-box and WD repeat domain containing 2-like63965582239657209Rat
7715436LOC102555226uncharacterized LOC10255522663986161339880583Rat
11498435LOC108351205uncharacterized LOC10835120563997894040056684Rat
11377656LOC108351206uncharacterized LOC10835120664009299340159129Rat
1584006LOC690166similar to Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1)64029892140301186Rat
1583858LOC298902similar to thymine DNA glycosylase isoform 264051781940518998Rat
7515781LOC102556604uncharacterized LOC10255660464069432440713350Rat
7557098LOC102555705uncharacterized LOC10255570564080505840828898Rat
1564451Trib2tribbles pseudokinase 264101672241040972Rat
11402704LOC108351208uncharacterized LOC10835120864102456341034056Rat
11396519LOC108351207uncharacterized LOC10835120764105744441069494Rat
9412502LOC103692601uncharacterized LOC10369260164115838341186736Rat
7657676LOC102555864uncharacterized LOC10255586464118620641193574Rat
7500641LOC102555927uncharacterized LOC10255592764124337141263351Rat
9269822LOC103692602uncharacterized LOC10369260264126697441277657Rat
2321713LOC100360644ribosomal protein L11-like64138586641386410Rat
7501955LOC102550954uncharacterized LOC10255095464173769941777065Rat
1307646Lpin1lipin 164179621441905149Rat
70962Ntsr2neurotensin receptor 264191706541923780Rat
1564091Greb1growth regulating estrogen receptor binding 164193294142002770Rat
631412E2f6E2F transcription factor 664209251342108692Rat
3590Rock2Rho-associated coiled-coil containing protein kinase 264218086442289910Rat
1306818Slc66a3solute carrier family 66 member 364229067842302451Rat
1582838LOC690276hypothetical protein LOC69027664230678842313322Rat
631414Kcnf1potassium voltage-gated channel modifier subfamily F member 164247106042473738Rat
11520175LOC108351359uncharacterized LOC10835135964255139442555294Rat
628688Pdia6protein disulfide isomerase family A, member 664256826942585654Rat
1359430Atp6v1c2ATPase H+ transporting V1 subunit C264258545242632289Rat
1359447Nol10nucleolar protein 1064265666142745099Rat
1561890RGD1561890similar to craniofacial development protein 164277746942778374Rat
1597342LOC690346hypothetical protein LOC69034664279285642793963Rat
3227Odc1ornithine decarboxylase 164285252942859142Rat
7505429LOC102551312uncharacterized LOC10255131264286757742872756Rat
11410519LOC108351209uncharacterized LOC10835120964291222542913538Rat
6503469LOC100909414prothymosin alpha-like64294642242946911Rat
1563157RGD1563157similar to 60S ribosomal protein L3564294733442947705Rat
708375Hpcal1hippocalcin-like 164300192043109083Rat
11466675LOC108351210uncharacterized LOC10835121064309926743102006Rat
1305263Asap2ArfGAP with SH3 domain, ankyrin repeat and PH domain 264323117843348606Rat
9303238LOC103692603uncharacterized LOC10369260364327109543275538Rat
7683736LOC102555735arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like64334370243348606Rat
1307810Itgb1bp1integrin subunit beta 1 binding protein 164334892743363633Rat
1305767Cpsf3cleavage and polyadenylation specific factor 364336379243391712Rat
727866Iah1isoamyl acetate hydrolyzing esterase 164339311343400330Rat
620404Adam17ADAM metallopeptidase domain 1764340052543448280Rat
3979Ywhaqtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta64346329443493816Rat
1596058Taf1bTATA-box binding protein associated factor, RNA polymerase I subunit B64364493143722124Rat
7731406LOC102555986RNA-binding protein 34-like64367698443682162Rat
1305735Grhl1grainyhead-like transcription factor 164373483743795757Rat
11410754LOC108351211uncharacterized LOC10835121164379874043817002Rat
1306646Klf11Kruppel-like factor 1164382981243841649Rat
1596023Cys1cystin 164384493743862131Rat
1598310Rrm2ribonucleotide reductase regulatory subunit M264388462743890818Rat
9129113LOC103692612skin secretory protein xP2-like64400720844010249Rat
1305798Mboat2membrane bound O-acyltransferase domain containing 264400987244135501Rat
9236291LOC103692604serine palmitoyltransferase small subunit A pseudogene64414972844150964Rat
619949Kidins220kinase D-interacting substrate 22064422514244322938Rat
2322644LOC100363605hypothetical protein LOC10036360564434076344345208Rat
2859Id2inhibitor of DNA binding 264436007744361908Rat
7750909LOC102553891uncharacterized LOC10255389164437698444380923Rat
7526561LOC102553989uncharacterized LOC10255398964445231544479415Rat
9103871LOC103692605uncharacterized LOC10369260564450822844534604Rat
9329158LOC103692613NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5-like64455036444550731Rat
7629645LOC102554202uncharacterized LOC10255420264457953944590271Rat
7536096LOC102557053uncharacterized LOC10255705364466270144733569Rat
1583774LOC366583similar to D-3-phosphoglycerate dehydrogenase (3-PGDH)64534576145347209Rat
11494199LOC108351360uncharacterized LOC10835136064548393145489525Rat
1561737Rnf144aring finger protein 144A64550989545629233Rat
11391632LOC108351212uncharacterized LOC10835121264562938845660787Rat
620495Rsad2radical S-adenosyl methionine domain containing 264565594745669083Rat
1305881Cmpk2cytidine/uridine monophosphate kinase 264568324245694824Rat
2318155LOC100362433glutathione peroxidase 864575972445783681Rat
7619289LOC102554354uncharacterized LOC10255435464585435645861949Rat
11370295LOC108351213uncharacterized LOC10835121364587996645885026Rat
6501114LOC100909845phosphoglycerate mutase 1-like64609891446099789Rat
11384778LOC108351214uncharacterized LOC10835121464632698746347420Rat
2318102LOC100362486small nuclear ribonucleoprotein D364643330246451961Rat
11367627LOC108351215uncharacterized LOC10835121564644001946445035Rat
11415852LOC108351361uncharacterized LOC10835136164645782246465954Rat
11401899LOC108351216uncharacterized LOC10835121664660699946610980Rat
69351Sox11SRY-box transcription factor 1164662996746631988Rat
2324519LOC100362535ubiquitin-conjugating enzyme E2E 164674572346746364Rat
11387835LOC108351217uncharacterized LOC10835121764686622246906567Rat
9422695LOC103692606uncharacterized LOC10369260664712867847133057Rat
11407553LOC108351362uncharacterized LOC10835136264720085547203480Rat
2322612LOC100363637nucleophosmin 1-like64770545747706646Rat
1564913Akr1b1-ps1aldo-keto reductase family 1, member B1 (aldose reductase), pseudogene 164772399747725275Rat
1559651Dcdc2cdoublecortin domain containing 2C64773781447812219Rat
7730533LOC102549609ferritin light chain 1-like64778577047786982Rat
621804Allcallantoicase64781298947848068Rat
1309678Colec11collectin sub-family member 1164785776747889961Rat
61907Rps7ribosomal protein S764789952547904389Rat
1309012Rnaseh1ribonuclease H164791618847925582Rat
7678865LOC102547240uncharacterized LOC10254724064792927447936339Rat
727828Adi1acireductone dioxygenase 164794021147947173Rat
1566054Trappc12trafficking protein particle complex 1264795482248020280Rat
1305817Eipr1EARP complex and GARP complex interacting protein 164802177148135241Rat
620550Myt1lmyelin transcription factor 1-like64845238548843443Rat
9217337LOC103692607uncharacterized LOC10369260764856564848568127Rat
11364655LOC108351218uncharacterized LOC10835121864860858748745720Rat
1560694Pxdnperoxidasin64886649648982368Rat
3900Tpothyroid peroxidase64902091849089855Rat
1311276Sntg2syntrophin, gamma 264912308449324530Rat
9305061LOC103692608uncharacterized LOC10369260864935129249355077Rat
1596936LOC678748similar to peroxiredoxin 164938971649393857Rat
1359389Tmem18transmembrane protein 1864952922849534960Rat
1587117Alkal2ALK and LTK ligand 264982472549834921Rat
2020Acp1acid phosphatase 164983606449851714Rat
7574537LOC102551379uncharacterized LOC10255137964983854049841368Rat
1306440Sh3yl1SH3 and SYLF domain containing 164985177849895502Rat
1585983LOC679605similar to HIRA interacting protein 364990492149910229Rat
1564713Fam110cfamily with sequence similarity 110, member C64996847349974730Rat
7690279LOC102554981uncharacterized LOC10255498165009753950204592Rat
7502861LOC102555048uncharacterized LOC10255504865028086050370748Rat
7747059LOC102555103uncharacterized LOC10255510365037810650388066Rat
9288946LOC103692609serine palmitoyltransferase small subunit A pseudogene65050212050505751Rat
1306311Lamb1laminin subunit beta 165052879650596593Rat
735073Dlddihydrolipoamide dehydrogenase65059767750618694Rat
620623Slc26a3solute carrier family 26 member 365072508550766306Rat
1310703Cbll1Cbl proto-oncogene like 165077271850786861Rat
7499548LOC102555378uncharacterized LOC10255537865078699350811371Rat
3293Slc26a4solute carrier family 26 member 465080910350848443Rat
11449637LOC108351219uncharacterized LOC10835121965086432650869489Rat
11492151LOC108351220uncharacterized LOC10835122065087336050875303Rat
1359431Bcap29B-cell receptor-associated protein 2965088375850923743Rat
1311445Dus4ldihydrouridine synthase 4-like65092598750943546Rat
1563296Cog5component of oligomeric golgi complex 565095386851230860Rat
1310848Gpr22G protein-coupled receptor 2265101242151021253Rat
620444Hbp1HMG-box transcription factor 165123147951257699Rat
7663848LOC10255564560S ribosomal protein L18a-like65124572551246824Rat
3394Prkar2bprotein kinase cAMP-dependent type II regulatory subunit beta65126550951356383Rat
1306468Pik3cgphosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma65146569651501234Rat
2320310LOC100361355hypothetical LOC10036135565157757451580670Rat
1560812Ccdc71lcoiled-coil domain containing 71-like65165949851666145Rat
11468726LOC108351221uncharacterized LOC10835122165171501351738361Rat
2321896LOC100360561Nxt2 protein-like65171594751716704Rat
11404619LOC108351222uncharacterized LOC10835122265198749751994096Rat
1598099LOC679971similar to carbonic anhydrase 1365209256452093817Rat
631365Namptnicotinamide phosphoribosyltransferase65212208552156473Rat
7745718LOC102547378meteorin-like protein-like65224161652244902Rat
7542438LOC102547473uncharacterized LOC10254747365225275852265855Rat
1359569Sypl1synaptophysin-like 165226592052286037Rat
1591286Cdhr3cadherin-related family member 365234463552402144Rat
7719070LOC102547703uncharacterized LOC10254770365244437752459882Rat
1305730Atxn7l1ataxin 7-like 165245993052680552Rat
7563724LOC102549100uncharacterized LOC10254910065260144352602613Rat
1307943Efcab10EF-hand calcium binding domain 1065270230452709223Rat
11378331LOC108351223uncharacterized LOC10835122365271288352715369Rat
2319872LOC100361597hypothetical LOC10036159765272915052729584Rat
1307824Polr1fRNA polymerase I subunit F65275110652768574Rat
1595482LOC680142similar to translocase of outer mitochondrial membrane 70 homolog A65282226652824509Rat
6486238LOC10091255640S ribosomal protein SA-like65284478952846565Rat
11406804LOC10835133160S ribosomal protein L24 pseudogene65297266652978414Rat
11468431LOC108351224uncharacterized LOC10835122465316157753183865Rat
7578807LOC102552384histone deacetylase 9-like65326971753292537Rat
1595449LOC680175similar to 40S ribosomal protein S2065336254153362956Rat
1311812Ferd3lFer3-like bHLH transcription factor65337170653372596Rat
621455Twist1twist family bHLH transcription factor 165340124153403235Rat
1594139LOC680293similar to developmental pluripotency associated 4 isoform 165346964753470889Rat
1310748Hdac9histone deacetylase 965348736754358694Rat
11367774LOC108351350uncharacterized LOC10835135065433690854341237Rat
11502303LOC108351225uncharacterized LOC10835122565436366554394640Rat
1306328Prps1l1phosphoribosyl pyrophosphate synthetase 1-like 165441790354419593Rat
1309778Snx13sorting nexin 1365448762654591716Rat
1592964LOC680365similar to tumor rejection antigen gp9665474530154750022Rat
2074Ahraryl hydrocarbon receptor65496399055001806Rat
7734313LOC102554773uncharacterized LOC10255477365500192655104972Rat
1598279LOC366601similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)65508415355085871Rat
1565406Agr3anterior gradient 3, protein disulphide isomerase family member65537173855424233Rat
2319740LOC100361632hypothetical LOC10036163265538828655389250Rat
1583857LOC298960similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)65543998955441053Rat
1304606Agr2anterior gradient 2, protein disulphide isomerase family member65546578255487087Rat
1311788Tspan13tetraspanin 1365549765955524415Rat
621507Bzw2basic leucine zipper and W2 domains 265558675455647650Rat
7741315LOC102546420uncharacterized LOC10254642065560596755606620Rat
1306017Ankmy2ankyrin repeat and MYND domain containing 265564690555689223Rat
7502513LOC102556505non-POU domain-containing octamer-binding protein-like65566074955662526Rat
7645608LOC102547138non-POU domain-containing octamer-binding protein-like65566155855662806Rat
1560395Lrrc72leucine rich repeat containing 7265569426955757234Rat
7517562LOC102546494protein max-like65570681455708395Rat
11382383LOC10835133240S ribosomal protein S26-like65575792355758270Rat
628877Sostdc1sclerostin domain containing 165581282055816994Rat
1359368CrppaCDP-L-ribitol pyrophosphorylase A65588013656159466Rat
9299213LOC103692610coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial pseudogene65606878456071595Rat
7693349LOC102546794uncharacterized LOC10254679465621627656219734Rat
11479069LOC108351226uncharacterized LOC10835122665640039556411242Rat
2324155LOC100362703heterogeneous nuclear ribonucleoprotein A1-like65646981356504273Rat
3079Meox2mesenchyme homeobox 265662576856689195Rat
1589986Vom2r49vomeronasal 2 receptor, 4965673289156775529Rat
1312038Agmoalkylglycerol monooxygenase65684685957193918Rat
11398630LOC108351227uncharacterized LOC10835122765721938057257946Rat
11518989LOC108351363uncharacterized LOC10835136365725896757263048Rat
1563613RGD1563613similar to 40S ribosomal protein S2565739617857396594Rat
2488Dgkbdiacylglycerol kinase, beta65751635158277385Rat
7669283LOC102549779actin, cytoplasmic 2-like65759695257598103Rat
9263034LOC103692620thyroid hormone receptor-associated protein 3 pseudogene65770752757711961Rat
1589430LOC680646similar to 40S ribosomal protein S265838770358389016Rat
2323883LOC100362896prostatic binding protein-like65841915658419713Rat
1312007Etv1ETS variant transcription factor 165846721558558640Rat
2323695LOC100362999hsc70-interacting protein-like65929989659301508Rat
1305611Smarce1lSWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1-like65936683259368178Rat
7629082LOC102548656igE-binding protein-like65950501359506572Rat
1560073RGD1560073similar to ribosomal protein S1065953104259531582Rat
1588231LOC680735similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI)65966234959662893Rat
1588211LOC680755similar to B-cell receptor-associated protein 3765985009959852546Rat
2152Arl4aADP-ribosylation factor like GTPase 4A65994592659950586Rat
7630539LOC102551566uncharacterized LOC10255156665995078759958981Rat
735034Scinscinderin65997537560055075Rat
9259024LOC103692615uncharacterized LOC10369261566005446960065855Rat
1587073Lsmem1leucine-rich single-pass membrane protein 166011407760124297Rat
2867Ifrd1interferon-related developmental regulator 166013202560151354Rat
7633421LOC102551830uncharacterized LOC10255183066017887060180424Rat
1583856Zfp277zinc finger protein 27766024620960374388Rat
1561724Dock4dedicator of cytokinesis 466037483960782648Rat
9385702LOC103692616uncharacterized LOC10369261666042650560438016Rat
9392136LOC103692617transcription elongation factor B polypeptide 1 pseudogene66081840660818701Rat
2323665Immp2linner mitochondrial membrane peptidase subunit 266095835161859457Rat
2323872LOC100359421histone H3.3B-like66098867860989919Rat
7500279LOC102552766uncharacterized LOC10255276666103638861072441Rat
9346795LOC103692618uncharacterized LOC10369261866122470861227667Rat
71066Lrrn3leucine rich repeat neuronal 366137432861405195Rat
1589745Ndufa10l1NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10-like 166279695162798384Rat
11364132LOC108351333endogenous retrovirus group K member 8 Pol protein-like66331871763321091Rat
9072809LOC103692621oligosaccharyltransferase complex subunit OSTC pseudogene66333861163360873Rat
11403672LOC108351228uncharacterized LOC10835122866342982963439081Rat
7544796LOC102553990uncharacterized LOC10255399066412039964152399Rat
3070Dnajb9DnaJ heat shock protein family (Hsp40) member B966416591364170122Rat
9352471LOC103692619uncharacterized LOC10369261966417581464224796Rat
9440656LOC103692622uncharacterized LOC10369262266417582164178828Rat
1583553LOC681138similar to DnaJ (Hsp40) homolog, subfamily B, member 666419297264194110Rat
1311444Pnpla8patatin-like phospholipase domain containing 866422487064288465Rat
3209Nrcamneuronal cell adhesion molecule66429784364867408Rat
6490794LOC100911744ninein-like66458706664625636Rat
11460919LOC108348084dnaJ homolog subfamily C member 17-like66464616964648793Rat
9281538LOC103692623M-phase phosphoprotein 6 pseudogene66464879164650188Rat
6490132LOC100911871coiled-coil domain-containing protein 85C-like66472906164738925Rat
6489645LOC100911922alpha-enolase-like66477097764772670Rat
1598017LOC681255similar to G patch domain containing 4 protein isoform 266496894864969982Rat
11407073LOC108351229transformer-2 protein homolog alpha pseudogene66500672065008654Rat
1598278LOC366611similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1)66501265965014352Rat
1583855LOC298990hypothetical LOC29899066503123665032931Rat
1306117Stxbp6syntaxin binding protein 666508648365319527Rat
9397046LOC103692624uncharacterized LOC10369262466526989165273188Rat
9256166LOC103692625uncharacterized LOC10369262566560277365606082Rat
7593102LOC102555380uncharacterized LOC10255538066570522065722682Rat
7652149LOC102555435uncharacterized LOC10255543566574496665751008Rat
9294132LOC103692626uncharacterized LOC10369262666576651565770191Rat
9317184LOC103692627uncharacterized LOC10369262766577145765778037Rat
11450428LOC108351230uncharacterized LOC10835123066577935265787252Rat
621345Nova1NOVA alternative splicing regulator 166696012667085836Rat
7725900LOC102556158uncharacterized LOC10255615866824934368268080Rat
1598277LOC366613similar to Importin alpha-2 subunit (Karyopherin alpha-2 subunit) (SRP1-alpha) (RAG cohort protein 1) (Pendulin) (Pore targeting complex 58 kDa subunit) (PTAC58) (Importin alpha P1)66867292768674901Rat
7693265LOC102556377uncharacterized LOC10255637766871687368725462Rat
1334065Olr873-psolfactory receptor pseudogene 87366949762969498282Rat
2320031LOC100364934Leydig cell tumor 10 kDa protein-like66961929569619628Rat
2323500LOC100359740D-3-phosphoglycerate dehydrogenase-like66993708369938327Rat
7543646LOC102546336uncharacterized LOC10254633666993976269945424Rat
1559629RGD1559629similar to H+ ATP synthase66995012969951013Rat
2619Foxg1forkhead box G166997122769974037Rat
7619249LOC102546421uncharacterized LOC10254642166997556069994251Rat
7627887LOC102546496uncharacterized LOC10254649667021653970220854Rat
9219694LOC103692628uncharacterized LOC10369262867025830470343196Rat
6486816LOC100912520leydig cell tumor 10 kDa protein homolog67027622770276560Rat
1583294LOC685003similar to Leydig cell tumor 10 kDa protein67028946470289797Rat
9146736LOC103692629uncharacterized LOC10369262967096200770964521Rat
620964Prkd1protein kinase D167103501771349531Rat
11491233LOC108351231uncharacterized LOC10835123167167529871703445Rat
9182264LOC103692630uncharacterized LOC10369263067171201571733152Rat
7728058LOC102557478uncharacterized LOC10255747867173394471853649Rat
1310263G2e3G2/M-phase specific E3 ubiquitin protein ligase67209214872123878Rat
9079291LOC103692631uncharacterized LOC10369263167211317672114855Rat
619828Scfd1sec1 family domain containing 167212440872202703Rat
1587060LOC680823similar to Ubiquitin-conjugating enzyme E2 I (Ubiquitin-protein ligase I) (Ubiquitin carrier protein I) (SUMO-1-protein ligase) (SUMO-1-conjugating enzyme) (Ubiquitin-conjugating enzyme UbcE2A)67213301972133964Rat
7607530LOC102551044uncharacterized LOC10255104467218794872230834Rat
2323296LOC100359846hypothetical LOC10035984667226530672266267Rat
11497096LOC108351233uncharacterized LOC10835123367227091172359999Rat
9174726LOC103692632ADP-ribosylation factor-like protein 1 pseudogene67228870072290899Rat
11405764LOC108351234uncharacterized LOC10835123467231334072313928Rat
1308536Cochcochlin67235970272373710Rat
621827Strn3striatin 367237636072462676Rat
9229379LOC103692633uncharacterized LOC10369263367240361072409447Rat
1311990Ap4s1adaptor related protein complex 4 subunit sigma 167246197772502717Rat
1561653Hectd1HECT domain E3 ubiquitin protein ligase 167250965872596285Rat
1561116Heatr5aHEAT repeat containing 5A67264865472750202Rat
11421308LOC108351334vegetative cell wall protein gp1-like67274962172750307Rat
1309138Dtd2D-aminoacyl-tRNA deacylase 267278122972786835Rat
1306830Gpr33G protein-coupled receptor 3367280484372805848Rat
1307232Nubplnucleotide binding protein-like67289175873147837Rat
11440663LOC108351235tensin-2 pseudogene67293103972935120Rat
7536596LOC102552216tensin-like C1 domain-containing phosphatase-like67293141472932801Rat
1595110LOC685338similar to longevity assurance homolog 567319538973196416Rat
9358597LOC103692634uncharacterized LOC10369263467322460573225974Rat
9095294LOC103692641dynein assembly factor 3, axonemal homolog67334484273358025Rat
1308507Arhgap5Rho GTPase activating protein 567334512973408304Rat
7670615LOC102547541uncharacterized LOC10254754167344418873445547Rat
69412Akap6A-kinase anchoring protein 667355311173991992Rat
7709127LOC102547662uncharacterized LOC10254766267404979474058457Rat
9155261LOC103692635neuronal PAS domain-containing protein 3-like67408199574326992Rat
1307181Npas3neuronal PAS domain protein 367408199574913025Rat
7629096LOC102547735uncharacterized LOC10254773567424076474278309Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
11141D6Arb1230365136021551360517Ratregion
33977D6Mit424066060618660606431Ratregion
34072D6Mgh717764843275848432934Ratregion
37222D6Rat8221964559431945594535Ratregion
37392D6Rat9323064606586946066098Ratregion
35235D6Rat2913064060278240602911Ratregion
35338D6Rat3116264495702744957178Ratregion
35390D6Rat3614063760898037609119Ratregion
35447D6Rat5117064642734746427450Ratregion
37046D6Rat5212163792016937920285Ratregion
37662D6Rat9224564217299942173267Ratregion
37704D6Rat5817866066275160663159Ratregion
37704D6Rat5817866066275160662950Ratregion
37746D6Rat9619964102280541023027Ratregion
36534D6Rat3217264425600544256169Ratregion
36560D6Rat3415064223043642230607Ratregion
36586D6Rat2614065751640057516539Ratregion
36648D7Rat3817466196626561966435Ratregion
36729D6Rat2313967502330875023446Ratregion
36787D6Rat3716763819641238196578Ratregion
35036D6Rat2412566475336264753483Ratregion
35036D6Rat2412566437514364375264Ratregion
35583D6Rat5015066417896164179131Ratregion
35911D6Rat3315664191778641917988Ratregion
35943D6Rat3013264969526449695395Ratregion
39848D6Rat14315863931003139310183Ratregion
39924D6Rat14120164121618941216395Ratregion
39972D6Rat13222165355389253554118Ratregion
38080D6Rat9513165565392355654072Ratregion
38220D6Rat6721364517109045171324Ratregion
38608D6Rat10614266878117068781311Ratregion
38758D6Rat8313664278006242780205Ratregion
40044D6Rat15414866578468765784818Ratregion
40240D6Rat13313765157626251576390Ratregion
38930D6Rat6124564518709145187339Ratregion
39022D6Rat6022565471008254710294Ratregion
39232D6Rat9914065939141359391540Ratregion
39340D6Rat7320067277947372779682Ratregion
39450D6Rat13824964306950243069762Ratregion
39572D6Rat14011464295443542954552Ratregion
42779D6Rat22824563763921737639458Ratregion
42781D6Rat20720964410037944100601Ratregion
42782D6Rat20620564980278449802997Ratregion
42783D6Rat20514965668564756685783Ratregion
42784D6Rat20124366756527167565511Ratregion
42785D6Rat16816965904154859042432Ratregion
42786D6Rat16920266622241166222612Ratregion
42787D6Rat20211766190131661901426Ratregion
42788D6Rat20423866425752364257741Ratregion
42791D6Rat19810367058570870585794Ratregion
42792D6Rat19922367314144473141654Ratregion
41244D6Rat13515165050063450500784Ratregion
41444D6Rat13117065664147656641768Ratregion
42325D6Rat22123266845991468460143Ratregion
40770D6Rat13923164213464042134884Ratregion
40770D6Rat13923164213452442134884Ratregion
41006D6Rat13616464921870049218931Ratregion
41064D6Rat13419965003992350040117Ratregion
41548D6Rat13016067244499972445149Ratregion
41606D6Rat14416763772531437725676Ratregion
41606D6Rat14416763772531437725480Ratregion
41608D6Rat14227364453139644531663Ratregion
41668D6Rat17022864817924348179481Ratregion
44074D6Got5413764498273344982869Ratregion
44075D6Got5822064606982246070041Ratregion
44076D6Got5517364776597047766142Ratregion
44077D6Got6029665175653951756834Ratregion
44078D6Got6619665252519252525387Ratregion
44079D6Got6423765289047052890704Ratregion
44080D6Got618665201091252010994Ratregion
44081D6Got6318165338258953382766Ratregion
44082D6Got6513565355396753554101Ratregion
44083D6Got6825965406853954068797Ratregion
44084D6Got6217565547549655475670Ratregion
44086D6Got6917665482546454825639Ratregion
44087D6Got6713365485910654859238Ratregion
44089D6Got7011665810480258104917Ratregion
44090D6Got7212665968246959682594Ratregion
44091D6Got7412166102395961024079Ratregion
44092D6Got7324166063192760632167Ratregion
44094D6Got7627166688365666883926Ratregion
44095D6Got7718266543046865430649Ratregion
44096D6Got8019666947267069472865Ratregion
44097D6Got7926867134110971341685Ratregion
44097D6Got7926867134110971341376Ratregion
44098D6Got8212467171253071712653Ratregion
44099D6Got8116267190091471901075Ratregion
44100D6Got9022767364697473647200Ratregion
44103D6Got9122267370073873700956Ratregion
44105D6Got8810767405595274056058Ratregion
44106D6Got8715467494706774947220Ratregion
44059D6Got3825763812556638125819Ratregion
44061D6Got3924763992075339920999Ratregion
44063D6Got3421863788065637880873Ratregion
44064D6Got3313863812559238125729Ratregion
44065D6Got4215064116096141161110Ratregion
44066D6Got4822664250013742500362Ratregion
44067D6Got4911864310707843107195Ratregion
44068D6Got5016164335974343359903Ratregion
44069D6Got5220864351043243510639Ratregion
44070D6Got19923264360266243602893Ratregion
44073D6Got5729464675278546753078Ratregion
60526D6Got2007466467116864671241Ratregion
60536D6Got3712963932704239327170Ratregion
60539D6Got4320164097658740976787Ratregion
60540D6Got4423764202973042029954Ratregion
60541D6Got4516264185707541857237Ratregion
60542D6Got4620464207177642071978Ratregion
60544D6Got5124264436786544368108Ratregion
60545D6Got5624064491189344912132Ratregion
60546D6Got5919964496216544962363Ratregion
69535D6Uwm314565956357559563707Ratregion
625778D6Got8918667330987973310064Ratregion
62501D6Uia335064749361847493962Ratregion
67223D6Arb1111265773240157732512Ratregion
67229D6Arb2124263837055638370797Ratregion
67277D6Arb836064285773642858092Ratregion
1631403D6Got31618364719760447197786Ratregion
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1638211D6Wox3618767399022873990414Ratregion
7205942Foxg1066997015169971510Ratregion
7193004Etv149165846826958468759Ratregion
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8693214rs10751130064469631544696315Ratregion
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5036187RH12584224565282233452822578Ratregion
5038836RH12736018664258609842586451Ratregion
7206578UniSTS:5471496064663050846630567Ratregion
5039158RH12754520665827702858277233Ratregion
5036454Prkcm20667103562071035825Ratregion
5036504Sox1173464662918346629916Ratregion
5037143RH7069815164340164643401796Ratregion
5035552MYCN72463822259938223322Ratregion
5035677HSCZSD08220864884578748845994Ratregion
5033937RH14068019565496564554965839Ratregion
5034043RH141145064551005445510268Ratregion
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5028937RH14289010063935828739358386Ratregion
5028985RH14307530064335304943353348Ratregion
5031698AU04744818367367767873677860Ratregion
5034379STS-N3438912165077285850772978Ratregion
5029197RH14388517864384121643841393Ratregion
5031976AU0465018465442825954428375Ratregion
5026690RH13316321864291431842914535Ratregion
5029341RH14442715767218701272187168Ratregion
5029395RH14462817164795617347956343Ratregion
5032054AU04682410164156666941566769Ratregion
5029427Twist34065340174753402086Ratregion
5032229Y1257712465994868459948807Ratregion
5032327Etv178765855341158554197Ratregion
5029581BE10124617264569339645693567Ratregion
5029649BI27753818365570662455706925Ratregion
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5035458BQ19434619164793249047932680Ratregion
5032623RH13469019767399165173991847Ratregion
5029943BF40007623565787084657871080Ratregion
5029979BF38837621364331927143319483Ratregion
5030043AW53115421064228256642282775Ratregion
5032771RH13524018366416528464165466Ratregion
5035196BM39055917064193358441933753Ratregion
5035286BF38775415066417605264176201Ratregion
5027445AW31951711664101685941016974Ratregion
5027447AV3758749265166342351663514Ratregion
5027449C853178566508656065086644Ratregion
5030217AW53235417264724945347249624Ratregion
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5025100RH12680130965054205950542367Ratregion
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5025386RH12811520865244447652444683Ratregion
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5025520RH12863718164340007443400254Ratregion
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5025684RH12926015064310891043109059Ratregion
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5054035RH14299321264420353844203749Ratregion
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5057368Nato3-pending45365337176453372216Ratregion
5052121RH9485211364436010044360214Ratregion
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5049900RH13374620265549791955498123Ratregion
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7193124MYCN44663822792838228373Ratregion
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5045116RH13099321964565618445656402Ratregion
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5077928RH14004120564662834346628547Ratregion
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5089223AU04902821765788931557889531Ratregion
5081390AI45455820366422607664226278Ratregion
5085950BM38449618167367498773675167Ratregion
5080860RH14182518363935927839359460Ratregion
5080936RH14186919864569371845693915Ratregion
5084436AA8498299565459096654591060Ratregion
5082731AI57910710564274489942745003Ratregion
5086195BQ19991416966006011260060280Ratregion
5081042RH14193120766486185664862062Ratregion
5084922AI17177513164179883441798964Ratregion
5081547AW43383311063811435938114468Ratregion
5085131BQ19557417464372739843727571Ratregion
5085292AI59852416965668873756688905Ratregion
5083639BE10098615165255818352558333Ratregion
5086783BM38673118464379536043795543Ratregion
5085932BM38374917364379634843796520Ratregion
5503595UniSTS:46469211665581594555816060Ratregion
5502943Tomm70a90765282278452823690Ratregion
5503847Sostdc119865581577855815975Ratregion
5504776PMC99801P125564285502642855280Ratregion
5504901ha3186140665404421054045615Ratregion
5505357Slc26a415465083689450837047Ratregion
5505448Id212364436445644364578Ratregion
5504965Tpo148464906114749062630Ratregion
5505169Trib228164101685841017138Ratregion
5505412Ndufa1090066279730762798206Ratregion
5505674UniSTS:488924163465441791554419548Ratregion
5506086Myt1l064884271648843297Ratregion
5506409Nova154066696597766966516Ratregion
5507307fc03e11.x191767481462574815541Ratregion
5507199UniSTS:22524316966997325669973424Ratregion
5499627MARC_4117-4118:991938388:111165124602751246137Ratregion
5499671MARC_7327-7328:992008337:162265846823058468851Ratregion
5500113UniSTS:23682813765059292750593063Ratregion
5502186MARC_7649-7650:996688053:1067293390472934134Ratregion
5502573RH12541010964258066242581436Ratregion
5500442fc63b12.x1064319725443197562Ratregion
5500442fc63b12.x1064319723443197562Ratregion
5503380S0226065822923458229814Ratregion
5503538NOVA1__606561366696350566964117Ratregion
5503778UniSTS:47067645764939331549393784Ratregion
5501295D11S260514567013257170132720Ratregion
5501608RH44636066500755765007679Ratregion
5501580RH6999213165124604451246174Ratregion
5505540D2S171152765002204050023566Ratregion
5501820MARC_13945-13946:1007583817:174765246000252460748Ratregion
5507147UniSTS:22484115467103556871035721Ratregion
Position Markers

Flank 1: (D6Rat36)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0637,608,980 - 37,609,119NCBI
Rnor_5.0650,735,827 - 50,735,966UniSTS
RGSC_v3.4635,883,847 - 35,883,986UniSTS
RGSC_v3.4635,883,625 - 35,883,996RGD
RGSC_v3.1635,886,800 - 35,886,939RGD
Celera634,463,599 - 34,463,738UniSTS
Cytogenetic Map6q14UniSTS
RH 3.4 Map6139.1RGD
RH 3.4 Map6139.1UniSTS
RH 2.0 Map6284.1RGD
FHH x ACI Map629.28RGD
Peak: (D6Arb12)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0651,360,215 - 51,360,517NCBI
Rnor_5.0660,030,865 - 60,031,167UniSTS
RGSC_v3.4650,329,129 - 50,329,432RGD
RGSC_v3.4650,329,130 - 50,329,432UniSTS
RGSC_v3.1650,332,255 - 50,332,558RGD
Celera647,859,335 - 47,859,637UniSTS
Cytogenetic Map6q16UniSTS
RH 3.4 Map6303.6UniSTS
RH 3.4 Map6303.6RGD
RH 2.0 Map6470.5RGD
FHH x ACI Map643.7499RGD
Flank 2: (D6Rat23)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0675,023,308 - 75,023,446NCBI
Rnor_5.0684,567,798 - 84,567,936UniSTS
RGSC_v3.4674,436,856 - 74,436,995RGD
RGSC_v3.4674,436,857 - 74,436,995UniSTS
RGSC_v3.1674,439,982 - 74,440,121RGD
Celera670,485,804 - 70,485,940UniSTS
RH 2.0 Map6686.7RGD
SHRSP x BN Map646.6299RGD
FHH x ACI Map656.9299RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6141917988Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6142388212Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6142388212Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142388212Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6142388212Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6142388212Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6143665660Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6143665660Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6143665660Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6144015370Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6144570292Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6175623393Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112039346120393Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)6112039375023446Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)62537030111715717Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)6616172276002731Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6616172276002731Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)67009971115379601Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)71017386255173862Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)61312295857516539Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)61941788764417887Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62151530265784818Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63425776653855198Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63436743680490628Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63499565675623393Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63626028860606186Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63626028884763275Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63760898075023446Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63810630883106308Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63819641260606431Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64167904686679046Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)648432758108268790Rat
4889848Pur25Proteinuria QTL 25140.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65980306594001333Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)660606431108154445Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)660606431108154445Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)662263348107263348Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)666129520111129520Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)66622261275023308Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)668781170147991367Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)668781170147991367Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)671206251116206251Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Scl29

RGD Curation Notes
Note Type Note Reference
qtl_general suggestive linkage only; threshold for significant linkage was set at LOD=4.3 737686