D6Rat95 Marker Search Result - Rat Genome Database

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Marker: D6Rat95

Symbol: D6Rat95
Previously known as: oxsts11315; R0067-A04; 
RGD ID: 38080
Expected Size: 131 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2652,895,240 - 52,895,390 (+)MAPPERmRatBN7.2
Rnor_6.0655,653,923 - 55,654,072NCBIRnor6.0
Rnor_5.0665,268,115 - 65,268,264UniSTSRnor5.0
RGSC_v3.4654,887,959 - 54,888,108UniSTSRGSC3.4
RGSC_v3.4654,887,958 - 54,888,108RGDRGSC3.4
RGSC_v3.1654,891,085 - 54,891,234RGD
Celera652,037,868 - 52,038,017UniSTS
RH 3.4 Map6364.59RGD
RH 3.4 Map6364.59UniSTS
RH 2.0 Map6548.1RGD
SHRSP x BN Map640.9199RGD
FHH x ACI Map645.9599RGD
Cytogenetic Map6q16UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   M520/N   ACI/N   LN/Mav   GH/Omr   SS/Jr   COP/OlaHsd  
Genes:   Ankmy2  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer AAGCTGACCTCTGACCTCCA
Reverse Primer GGTTCCGATTAGAAGCCACA
 
Template 
GGCCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCCAGAAAGAGAATGAC
TTCCATGAGTTCTCAGTGGAGAATGTGGTTCAACTGAAGCATCTTCTCCAAGTGCAAATGGGGT
AAGGGACTTTTTGTTCCCAAATTTCCTTGAGTCTGAGAAAGGTTCCGATTAGAAGCCACAGTGT
GTGTGTGCATGTGTGTCTGTCTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATTGTAGGT
GTATAGGTGTTTGTTCATTTGGGTGGAGGTCAGAGGTCAGCTTTCAGTGTCATTATCAGGAACA
TTATCTTCCTCTTTTGAGATAGAGTCTACCATGTGCCTGGTACTCACTAGTTAGGGGGTACCGA
GCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCC
ACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTANTGAGTGAGCTAACTC
ACATTATTGCGTTGCGCTCATGCCCGCTTTCCAGTCGG
Strain, Expected Size(s)

ACI/N 128 AVN/Orl 128 BBDP/Rhw 128
BBDR/Rhw 128 BC/CpbU 128 BDIX/Han 128
BDVII/Cub 128 BP/Cub 128 BUF/Pit 128
COP/OlaHsd 128 DA/PitN 128 DON/Melb 128
F344/Pit 128 FHH/Eur 130 GH/Omr 128
IS/Kyo 130 LE/Mol 128 LEW/Pit 128
LH/Mav 128 LN/Mav 128 LOU/CHan 128
M520/N 128 MHS/Gib 128 MNR/N 128
MNRA/N 128 MNS/Gib 132 MR/Pit 128
NP9 128 ODU/N 132 OKA/Wsl 130
OM/Ztm 128 P5C 128 SD/Rij 132
SHR/OlaHsd 130 SHRSP/Riv 130 SR/Jr 128
SS/Jr 128 WAG/RijKyo 128 WF/Pit 128
WIST/Nhg 218 WKY/OlaHsd 132 WN/N 128
WTC/Kyo 132


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1306017Ankmy2ankyrin repeat and MYND domain containing 265288895952930343Rat
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat

1 to 10 of 24 rows


Database
Acc Id
Source(s)
NCBI Gene 314046 UniSTS