Gpatch4-ps1 (G patch domain-containing protein 4, pseudogene 1) - Rat Genome Database

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Gene: Gpatch4-ps1 (G patch domain-containing protein 4, pseudogene 1) Rattus norvegicus
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Symbol: Gpatch4-ps1
Name: G patch domain-containing protein 4, pseudogene 1
RGD ID: 1598017
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC681255; similar to G patch domain containing 4 protein isoform 2
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8667,529,668 - 67,530,911 (+)NCBIGRCr8
mRatBN7.2661,802,389 - 61,803,939 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0664,968,948 - 64,969,982 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0674,550,666 - 74,551,708 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4664,127,309 - 64,131,831 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera660,789,323 - 60,790,357 (+)NCBICelera
Cytogenetic Map6q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gpatch4-ps1
4 total Variants

1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat

1 to 10 of 23 rows





GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-37686 BioCyc
NCBI Gene 681255 ENTREZGENE
PhenoGen Gpatch4-ps1 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Gpatch4-ps1  G patch domain-containing protein 4, pseudogene 1  LOC681255  similar to G patch domain containing 4 protein isoform 2  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC681255  similar to G patch domain containing 4 protein isoform 2  LOC687348  similar to G patch domain containing 4 protein isoform 2  Data merged from RGD:1586549 1643240 APPROVED
2006-11-20 LOC681255  similar to G patch domain containing 4 protein isoform 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687348  similar to G patch domain containing 4 protein isoform 2      Symbol and Name status set to provisional 70820 PROVISIONAL