Immp2l (inner mitochondrial membrane peptidase subunit 2) - Rat Genome Database
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Gene: Immp2l (inner mitochondrial membrane peptidase subunit 2) Rattus norvegicus
Analyze
Symbol: Immp2l
Name: inner mitochondrial membrane peptidase subunit 2
RGD ID: 2323665
Description: Predicted to have peptidase activity. Predicted to be involved in several processes, including cerebellum vasculature development; gamete generation; and mitochondrion organization. Predicted to localize to mitochondrial inner membrane peptidase complex. Orthologous to human IMMP2L (inner mitochondrial membrane peptidase subunit 2); PARTICIPATES IN presequence pathway of mitochondrial protein import; INTERACTS WITH (+)-schisandrin B; flutamide; sodium dichromate.
Type: protein-coding
RefSeq Status: MODEL
Also known as: IMP2 inner mitochondrial membrane peptidase-like; IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae); LOC100359529; mitochondrial inner membrane protease subunit 2; rCG61688-like
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0660,958,351 - 61,859,457 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0670,542,228 - 71,442,553 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4660,311,939 - 61,230,323 (+)NCBIRGSC3.4rn4RGSC3.4
Celera657,099,574 - 57,996,686 (+)NCBICelera
Cytogenetic Map6q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:15814844   PMID:18094351   PMID:18614015   PMID:21824519  


Genomics

Comparative Map Data
Immp2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0660,958,351 - 61,859,457 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0670,542,228 - 71,442,553 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4660,311,939 - 61,230,323 (+)NCBIRGSC3.4rn4RGSC3.4
Celera657,099,574 - 57,996,686 (+)NCBICelera
Cytogenetic Map6q21NCBI
IMMP2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7110,662,644 - 111,562,517 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl7110,663,051 - 111,562,517 (-)EnsemblGRCh38hg38GRCh38
GRCh387110,662,644 - 111,562,531 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh377110,303,106 - 111,202,588 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367110,090,346 - 110,989,583 (-)NCBINCBI36hg18NCBI36
Build 347109,897,060 - 110,796,298NCBI
Celera7105,115,742 - 106,014,670 (-)NCBI
Cytogenetic Map7q31.1NCBI
HuRef7104,671,517 - 105,569,638 (-)NCBIHuRef
CHM1_17110,236,431 - 111,136,714 (-)NCBICHM1_1
CRA_TCAGchr7v27109,670,249 - 110,571,318 (-)NCBI
Immp2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391241,074,060 - 42,002,371 (+)NCBI
GRCm381241,024,061 - 41,955,588 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1241,024,090 - 41,955,588 (+)EnsemblGRCm38mm10GRCm38
MGSCv371242,729,751 - 43,056,573 (+)NCBIGRCm37mm9NCBIm37
MGSCv361242,499,050 - 42,825,872 (+)NCBImm8
Celera1242,450,417 - 43,365,433 (+)NCBICelera
Cytogenetic Map12B1NCBI
Immp2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541014,567,951 - 15,354,190 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541014,567,787 - 15,420,025 (-)NCBIChiLan1.0ChiLan1.0
IMMP2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17115,364,945 - 116,240,302 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v07102,647,212 - 103,536,293 (-)NCBIMhudiblu_PPA_v0panPan3
IMMP2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11450,487,679 - 51,336,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Immp2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366533,268,229 - 3,543,173 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IMMP2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1834,006,688 - 34,906,268 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11834,006,841 - 34,930,252 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21837,015,616 - 37,729,739 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IMMP2L
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12179,530,113 - 80,388,851 (-)NCBI
Immp2l
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473918,264,690 - 19,194,634 (+)NCBI

Position Markers
D6Got74  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0661,023,959 - 61,024,079NCBIRnor6.0
Rnor_5.0670,607,259 - 70,607,379UniSTSRnor5.0
RGSC_v3.4660,388,801 - 60,388,922RGDRGSC3.4
RGSC_v3.4660,388,802 - 60,388,922UniSTSRGSC3.4
RGSC_v3.1660,391,928 - 60,392,048RGD
Celera657,165,760 - 57,165,896UniSTS
RH 3.4 Map6414.6UniSTS
RH 3.4 Map6414.6RGD
RH 2.0 Map6595.2RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6175623393Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)6112039375023446Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)62537030111715717Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)6616172276002731Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6616172276002731Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)percentage of deaths in a study population during a period of time (CMO:0001024)67009971115379601Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)61941788764417887Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62151530265784818Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63436743680490628Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63499565675623393Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63626028884763275Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63760898075023446Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63810630883106308Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64167904686679046Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)648432758108268790Rat
4889848Pur25Proteinuria QTL 25140.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65980306594001333Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)660606431108154445Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)660606431108154445Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:30
Count of miRNA genes:25
Interacting mature miRNAs:30
Transcripts:ENSRNOT00000071138
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_002726737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002729645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07064027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07064028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07064029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07064030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07064031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07064032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07064033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07064034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07064035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07064036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07064037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07064038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01043706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_002726737   ⟹   XP_002726783
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera657,099,574 - 57,996,686 (+)NCBI
Sequence:
RefSeq Acc Id: XM_002729645   ⟹   XP_002729691
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0660,958,351 - 61,859,457 (+)NCBI
Rnor_5.0670,542,228 - 71,442,553 (+)NCBI
RGSC_v3.4660,311,939 - 61,230,323 (+)RGD
Sequence:
RefSeq Acc Id: XM_017594551   ⟹   XP_017450040
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0660,958,498 - 61,708,489 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603158   ⟹   XP_017458647
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera657,099,721 - 57,845,835 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_002726783 (Get FASTA)   NCBI Sequence Viewer  
  XP_002729691 (Get FASTA)   NCBI Sequence Viewer  
  XP_017450040 (Get FASTA)   NCBI Sequence Viewer  
  XP_017458647 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM03345 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_002726783   ⟸   XM_002726737
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_002729691   ⟸   XM_002729645
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017458647   ⟸   XM_017603158
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017450040   ⟸   XM_017594551
- Peptide Label: isoform X2
- Sequence:


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
6 70572347 70572348 G T snv LE/OrlBarth (UDEL)
6 70572485 70572486 C T snv IS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU)
6 70572990 70572991 C G snv GH/OmrMcwi (MCW), ACI/EurMcwi (MCW), SS/JrHsdMcwi (MCW), FHH/EurMcwi (MCW)
6 70572991 70572992 T A snv ACI/EurMcwi (MCW), SS/JrHsdMcwi (MCW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW)
6 70572994 70572995 T G snv FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), SS/JrHsdMcwi (MCW), GH/OmrMcwi (MCW)


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
6 60989011 60989012 A G snv CDR, CDS, SBH/Ygl (MCW)
6 60989047 60989048 G T snv CDR, F344/NRrrc (MCW), CDS, SBH/Ygl (MCW), Buf/N (MCW)
6 60989104 60989105 T C snv SBH/Ygl (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2323665 AgrOrtholog
NCBI Gene 100359529 ENTREZGENE
PhenoGen Immp2l PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-01 Immp2l  inner mitochondrial membrane peptidase subunit 2  Immp2l  IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-19 Immp2l  IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)  LOC100359529  rCG61688-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100359529  rCG61688-like      Symbol and Name status set to provisional 70820 PROVISIONAL