Nrcam (neuronal cell adhesion molecule) - Rat Genome Database

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Gene: Nrcam (neuronal cell adhesion molecule) Rattus norvegicus
Analyze
Symbol: Nrcam
Name: neuronal cell adhesion molecule
RGD ID: 3209
Description: Predicted to enable ankyrin binding activity and protein binding activity involved in heterotypic cell-cell adhesion. Predicted to be involved in several processes, including angiogenesis; homophilic cell adhesion via plasma membrane adhesion molecules; and neuron development. Predicted to act upstream of or within several processes, including neuronal action potential propagation; regulation of neuron projection development; and retinal ganglion cell axon guidance. Located in axon initial segment and node of Ranvier. Orthologous to human NRCAM (neuronal cell adhesion molecule); INTERACTS WITH 17beta-estradiol; 4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ankyrin-binding cell adhesion molecule NrCAM; neuron-glia-CAM-related cell adhesion molecule; neuronal surface protein Bravo; ng-CAM-related; ngCAM-related cell adhesion molecule; nr-CAM; rBravo
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2661,402,813 - 61,698,536 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl661,329,863 - 61,702,992 (+)Ensembl
Rnor_6.0664,297,843 - 64,867,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl664,297,888 - 64,864,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0673,887,250 - 74,029,039 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0674,371,672 - 74,446,689 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4663,717,460 - 64,015,522 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1663,720,585 - 64,018,648 (+)NCBI
Celera660,398,331 - 60,686,704 (+)NCBICelera
Cytogenetic Map6q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetamide  (EXP)
acetylsalicylic acid  (ISO)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
androgen antagonist  (EXP)
anthracen-2-amine  (EXP)
antimycin A  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
Butylparaben  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
chloroprene  (ISO)
chlorpyrifos  (EXP,ISO)
chrysene  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cyproconazole  (ISO)
DDE  (EXP)
decabromodiphenyl ether  (EXP)
deguelin  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
entinostat  (ISO)
enzacamene  (EXP)
epoxiconazole  (EXP)
ethanol  (ISO)
fenpyroximate  (ISO)
flavonoids  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
Heliotrine  (EXP)
hexaconazole  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
Lasiocarpine  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
linuron  (EXP)
lithium chloride  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
morphine  (EXP)
N-nitrosomorpholine  (EXP)
nickel atom  (ISO)
paracetamol  (EXP)
PD 0325901  (ISO)
perfluorononanoic acid  (ISO)
phenytoin  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
prochloraz  (EXP)
procymidone  (EXP)
Ptaquiloside  (ISO)
pyrimidifen  (ISO)
sarin  (ISO)
SB 431542  (ISO)
senecionine  (EXP)
Senkirkine  (EXP)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetraphene  (ISO)
thifluzamide  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:7961622   PMID:11866539   PMID:12182881   PMID:14602817   PMID:15254265   PMID:15992371   PMID:16039564   PMID:16123759   PMID:16701205   PMID:16882004   PMID:20188654   PMID:25143608  
PMID:29981323  


Genomics

Comparative Map Data
Nrcam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2661,402,813 - 61,698,536 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl661,329,863 - 61,702,992 (+)Ensembl
Rnor_6.0664,297,843 - 64,867,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl664,297,888 - 64,864,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0673,887,250 - 74,029,039 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0674,371,672 - 74,446,689 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4663,717,460 - 64,015,522 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1663,720,585 - 64,018,648 (+)NCBI
Celera660,398,331 - 60,686,704 (+)NCBICelera
Cytogenetic Map6q21NCBI
NRCAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7108,147,623 - 108,456,717 (-)EnsemblGRCh38hg38GRCh38
GRCh387108,147,649 - 108,456,720 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh377107,788,094 - 108,097,164 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367107,575,318 - 107,884,062 (-)NCBINCBI36hg18NCBI36
Build 347107,382,057 - 107,690,734NCBI
Celera7102,595,073 - 102,910,207 (-)NCBI
Cytogenetic Map7q31.1NCBI
HuRef7102,150,368 - 102,465,060 (-)NCBIHuRef
CHM1_17107,721,788 - 108,030,155 (-)NCBICHM1_1
CRA_TCAGchr7v27107,149,256 - 107,464,062 (-)NCBI
Nrcam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391244,375,568 - 44,651,977 (+)NCBIGRCm39mm39
GRCm39 Ensembl1244,375,668 - 44,648,747 (+)Ensembl
GRCm381244,328,786 - 44,605,194 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1244,328,885 - 44,601,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371245,429,872 - 45,702,833 (+)NCBIGRCm37mm9NCBIm37
MGSCv361245,199,270 - 45,469,127 (+)NCBImm8
Celera1245,683,540 - 45,966,316 (+)NCBICelera
Cytogenetic Map12B2NCBI
cM Map1220.71NCBI
Nrcam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541012,437,248 - 12,518,075 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541012,437,248 - 12,518,083 (-)NCBIChiLan1.0ChiLan1.0
NRCAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17112,849,823 - 113,107,008 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,849,811 - 112,942,413 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07100,129,389 - 100,442,910 (-)NCBIMhudiblu_PPA_v0panPan3
NRCAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,264,063 - 12,477,247 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,264,063 - 12,475,230 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1811,846,533 - 12,121,649 (+)NCBI
ROS_Cfam_1.01812,473,514 - 12,748,839 (+)NCBI
ROS_Cfam_1.0 Ensembl1812,473,516 - 12,748,837 (+)Ensembl
UMICH_Zoey_3.11812,290,622 - 12,565,756 (+)NCBI
UNSW_CanFamBas_1.01812,211,034 - 12,486,329 (+)NCBI
UU_Cfam_GSD_1.01812,438,363 - 12,713,835 (+)NCBI
Nrcam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511868,015,682 - 68,287,622 (-)NCBI
SpeTri2.0NW_0049366531,167,055 - 1,238,241 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRCAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,928,867 - 108,247,680 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19107,928,866 - 108,248,018 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29118,693,386 - 118,788,883 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NRCAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12177,065,496 - 77,370,774 (-)NCBIChlSab1.1chlSab2
ChlSab1.12177,065,496 - 77,370,774 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2177,065,211 - 77,270,797 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604226,492,852 - 26,798,704 (+)NCBIVero_WHO_p1.0
Nrcam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473921,308,457 - 21,633,627 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D6Rat24  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2661,480,895 - 61,481,017 (+)MAPPERmRatBN7.2
Rnor_6.0664,753,362 - 64,753,483NCBIRnor6.0
Rnor_6.0664,375,143 - 64,375,264NCBIRnor6.0
Rnor_5.0673,964,811 - 73,964,932UniSTSRnor5.0
Rnor_5.0674,335,098 - 74,335,219UniSTSRnor5.0
RGSC_v3.4663,794,794 - 63,795,234RGDRGSC3.4
RGSC_v3.4663,795,021 - 63,795,142UniSTSRGSC3.4
RGSC_v3.1663,798,147 - 63,798,268RGD
Celera660,475,590 - 60,475,711UniSTS
RH 3.4 Map6447.8RGD
RH 3.4 Map6447.8UniSTS
RH 2.0 Map6610.8RGD
SHRSP x BN Map643.1299RGD
FHH x ACI Map652.5299RGD
Cytogenetic Map6q21UniSTS
RH94713  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2661,692,292 - 61,692,472 (+)MAPPERmRatBN7.2
Rnor_6.0664,862,004 - 64,862,183NCBIRnor6.0
Rnor_5.0674,443,697 - 74,443,876UniSTSRnor5.0
RGSC_v3.4664,012,530 - 64,012,709UniSTSRGSC3.4
Celera660,683,712 - 60,683,891UniSTS
Cytogenetic Map6q21UniSTS
AW535153  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2661,646,172 - 61,646,328 (+)MAPPERmRatBN7.2
Rnor_6.0664,815,882 - 64,816,037NCBIRnor6.0
Rnor_5.0674,397,553 - 74,397,708UniSTSRnor5.0
RGSC_v3.4663,965,892 - 63,966,047UniSTSRGSC3.4
Celera660,637,087 - 60,637,242UniSTS
RH 3.4 Map6454.4UniSTS
Cytogenetic Map6q21UniSTS
RH140409  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2661,693,853 - 61,694,088 (+)MAPPERmRatBN7.2
Rnor_6.0664,863,565 - 64,863,799NCBIRnor6.0
Rnor_5.0674,445,258 - 74,445,492UniSTSRnor5.0
RGSC_v3.4664,014,091 - 64,014,325UniSTSRGSC3.4
Celera660,685,273 - 60,685,507UniSTS
RH 3.4 Map6455.5UniSTS
Cytogenetic Map6q21UniSTS
RH141931  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2661,692,144 - 61,692,351 (+)MAPPERmRatBN7.2
Rnor_6.0664,861,856 - 64,862,062NCBIRnor6.0
Rnor_5.0674,443,549 - 74,443,755UniSTSRnor5.0
RGSC_v3.4664,012,382 - 64,012,588UniSTSRGSC3.4
Celera660,683,564 - 60,683,770UniSTS
RH 3.4 Map6454.4UniSTS
Cytogenetic Map6q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
4889848Pur25Proteinuria QTL 25140.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2489
Count of miRNA genes:345
Interacting mature miRNAs:457
Transcripts:ENSRNOT00000050222, ENSRNOT00000051908, ENSRNOT00000059739
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 74 1
Low 2 4 8 8 8 6 6 21 35 11 6
Below cutoff 1 37 39 31 18 31 2 3 11 5 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC133400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY528244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY574272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY574273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY574274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY574275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY574276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY574277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U81037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000050222   ⟹   ENSRNOP00000044341
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl661,402,839 - 61,695,285 (+)Ensembl
Rnor_6.0 Ensembl664,297,888 - 64,864,996 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000051908   ⟹   ENSRNOP00000045978
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl661,620,405 - 61,695,285 (+)Ensembl
Rnor_6.0 Ensembl664,790,001 - 64,864,996 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000059739   ⟹   ENSRNOP00000056494
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl661,402,839 - 61,695,285 (+)Ensembl
Rnor_6.0 Ensembl664,790,001 - 64,864,996 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078583   ⟹   ENSRNOP00000073230
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl661,402,839 - 61,692,122 (+)Ensembl
Rnor_6.0 Ensembl664,790,109 - 64,861,833 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082793   ⟹   ENSRNOP00000072479
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl661,402,839 - 61,702,992 (+)Ensembl
Rnor_6.0 Ensembl664,790,109 - 64,861,833 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083088   ⟹   ENSRNOP00000072959
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl661,402,839 - 61,695,285 (+)Ensembl
Rnor_6.0 Ensembl664,297,888 - 64,864,996 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085979   ⟹   ENSRNOP00000072733
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl661,329,863 - 61,692,369 (+)Ensembl
Rnor_6.0 Ensembl664,789,940 - 64,862,031 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091677   ⟹   ENSRNOP00000069715
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl661,402,839 - 61,693,579 (+)Ensembl
Rnor_6.0 Ensembl664,790,109 - 64,861,833 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093147   ⟹   ENSRNOP00000076123
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl664,297,896 - 64,796,677 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093195   ⟹   ENSRNOP00000076320
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl664,808,238 - 64,813,067 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093241   ⟹   ENSRNOP00000076330
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl661,329,863 - 61,693,579 (+)Ensembl
Rnor_6.0 Ensembl664,790,112 - 64,863,954 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093255
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl661,402,839 - 61,695,285 (+)Ensembl
Rnor_6.0 Ensembl664,845,757 - 64,864,996 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093290
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl664,297,936 - 64,790,072 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093300
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl664,831,905 - 64,833,519 (+)Ensembl
RefSeq Acc Id: NM_013150   ⟹   NP_037282
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,839 - 61,695,285 (+)NCBI
Rnor_6.0664,297,888 - 64,864,996 (+)NCBI
Rnor_5.0674,371,672 - 74,446,689 (+)NCBI
Rnor_5.0673,887,250 - 74,029,039 (+)NCBI
RGSC_v3.4663,717,460 - 64,015,522 (+)RGD
Celera660,398,331 - 60,686,704 (+)RGD
Sequence:
RefSeq Acc Id: XM_017594269   ⟹   XP_017449758
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,607,645 - 61,698,536 (+)NCBI
Rnor_6.0664,789,899 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594270   ⟹   XP_017449759
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
Rnor_6.0664,789,899 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594272   ⟹   XP_017449761
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
Rnor_6.0664,297,843 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594273   ⟹   XP_017449762
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
Rnor_6.0664,789,901 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594279   ⟹   XP_017449768
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
Rnor_6.0664,789,901 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594281   ⟹   XP_017449770
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
Rnor_6.0664,789,903 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594282   ⟹   XP_017449771
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
Rnor_6.0664,789,904 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594283   ⟹   XP_017449772
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
Rnor_6.0664,789,904 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594284   ⟹   XP_017449773
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
Rnor_6.0664,297,844 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594285   ⟹   XP_017449774
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,816 - 61,698,536 (+)NCBI
Rnor_6.0664,297,844 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594286   ⟹   XP_017449775
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
Rnor_6.0664,789,903 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594287   ⟹   XP_017449776
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
Rnor_6.0664,789,903 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594288   ⟹   XP_017449777
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
Rnor_6.0664,789,904 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594289   ⟹   XP_017449778
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
Rnor_6.0664,789,904 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594290   ⟹   XP_017449779
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,816 - 61,698,536 (+)NCBI
Rnor_6.0664,297,844 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594291   ⟹   XP_017449780
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,816 - 61,698,536 (+)NCBI
Rnor_6.0664,297,844 - 64,867,408 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112673   ⟹   XP_038968601
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112674   ⟹   XP_038968602
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112675   ⟹   XP_038968603
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112676   ⟹   XP_038968604
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112678   ⟹   XP_038968606
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112679   ⟹   XP_038968607
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,813 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112680   ⟹   XP_038968608
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,813 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112681   ⟹   XP_038968609
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,813 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112682   ⟹   XP_038968610
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112683   ⟹   XP_038968611
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112684   ⟹   XP_038968612
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112685   ⟹   XP_038968613
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112686   ⟹   XP_038968614
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112687   ⟹   XP_038968615
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,814 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112689   ⟹   XP_038968617
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112690   ⟹   XP_038968618
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112691   ⟹   XP_038968619
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112693   ⟹   XP_038968621
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112694   ⟹   XP_038968622
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112695   ⟹   XP_038968623
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112696   ⟹   XP_038968624
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112698   ⟹   XP_038968626
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112699   ⟹   XP_038968627
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112700   ⟹   XP_038968628
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112701   ⟹   XP_038968629
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112702   ⟹   XP_038968630
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112703   ⟹   XP_038968631
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112704   ⟹   XP_038968632
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112705   ⟹   XP_038968633
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112706   ⟹   XP_038968634
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XM_039112707   ⟹   XP_038968635
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,815 - 61,698,536 (+)NCBI
RefSeq Acc Id: XR_001838197
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,813 - 61,692,015 (+)NCBI
Rnor_6.0664,789,898 - 64,861,675 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001838198
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2661,402,813 - 61,692,013 (+)NCBI
Rnor_6.0664,789,898 - 64,861,683 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_037282 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449758 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449759 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449761 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449762 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449768 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449770 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449771 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449772 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449773 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449774 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449775 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449776 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449777 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449778 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449779 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449780 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968601 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968602 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968603 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968604 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968606 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968607 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968608 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968609 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968610 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968611 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968612 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968613 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968614 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968615 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968617 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968618 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968619 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968621 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968622 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968623 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968624 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968626 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968627 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968628 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968629 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968630 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968631 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968632 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968633 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968634 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968635 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB47755 (Get FASTA)   NCBI Sequence Viewer  
  AAS48509 (Get FASTA)   NCBI Sequence Viewer  
  AAS89820 (Get FASTA)   NCBI Sequence Viewer  
  AAS89821 (Get FASTA)   NCBI Sequence Viewer  
  AAS89822 (Get FASTA)   NCBI Sequence Viewer  
  AAS89823 (Get FASTA)   NCBI Sequence Viewer  
  AAS89824 (Get FASTA)   NCBI Sequence Viewer  
  AAS89825 (Get FASTA)   NCBI Sequence Viewer  
  P97686 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_037282   ⟸   NM_013150
- Peptide Label: precursor
- Sequence:
RefSeq Acc Id: XP_017449761   ⟸   XM_017594272
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K3Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449773   ⟸   XM_017594284
- Peptide Label: isoform X27
- Sequence:
RefSeq Acc Id: XP_017449779   ⟸   XM_017594290
- Peptide Label: isoform X31
- UniProtKB: A0A1W5DU98 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449774   ⟸   XM_017594285
- Peptide Label: isoform X25
- Sequence:
RefSeq Acc Id: XP_017449780   ⟸   XM_017594291
- Peptide Label: isoform X32
- Sequence:
RefSeq Acc Id: XP_017449758   ⟸   XM_017594269
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449759   ⟸   XM_017594270
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017449762   ⟸   XM_017594273
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017449768   ⟸   XM_017594279
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_017449775   ⟸   XM_017594286
- Peptide Label: isoform X26
- Sequence:
RefSeq Acc Id: XP_017449770   ⟸   XM_017594281
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_017449776   ⟸   XM_017594287
- Peptide Label: isoform X28
- Sequence:
RefSeq Acc Id: XP_017449771   ⟸   XM_017594282
- Peptide Label: isoform X23
- Sequence:
RefSeq Acc Id: XP_017449777   ⟸   XM_017594288
- Peptide Label: isoform X29
- Sequence:
RefSeq Acc Id: XP_017449772   ⟸   XM_017594283
- Peptide Label: isoform X24
- Sequence:
RefSeq Acc Id: XP_017449778   ⟸   XM_017594289
- Peptide Label: isoform X30
- Sequence:
RefSeq Acc Id: ENSRNOP00000072479   ⟸   ENSRNOT00000082793
RefSeq Acc Id: ENSRNOP00000056494   ⟸   ENSRNOT00000059739
RefSeq Acc Id: ENSRNOP00000072959   ⟸   ENSRNOT00000083088
RefSeq Acc Id: ENSRNOP00000045978   ⟸   ENSRNOT00000051908
RefSeq Acc Id: ENSRNOP00000073230   ⟸   ENSRNOT00000078583
RefSeq Acc Id: ENSRNOP00000072733   ⟸   ENSRNOT00000085979
RefSeq Acc Id: ENSRNOP00000076320   ⟸   ENSRNOT00000093195
RefSeq Acc Id: ENSRNOP00000076123   ⟸   ENSRNOT00000093147
RefSeq Acc Id: ENSRNOP00000076330   ⟸   ENSRNOT00000093241
RefSeq Acc Id: ENSRNOP00000044341   ⟸   ENSRNOT00000050222
RefSeq Acc Id: ENSRNOP00000069715   ⟸   ENSRNOT00000091677
RefSeq Acc Id: XP_038968607   ⟸   XM_039112679
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038968608   ⟸   XM_039112680
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038968609   ⟸   XM_039112681
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038968601   ⟸   XM_039112673
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968603   ⟸   XM_039112675
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038968615   ⟸   XM_039112687
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038968612   ⟸   XM_039112684
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038968602   ⟸   XM_039112674
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968610   ⟸   XM_039112682
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038968613   ⟸   XM_039112685
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038968611   ⟸   XM_039112683
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038968614   ⟸   XM_039112686
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038968606   ⟸   XM_039112678
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038968619   ⟸   XM_039112691
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038968622   ⟸   XM_039112694
- Peptide Label: isoform X34
RefSeq Acc Id: XP_038968627   ⟸   XM_039112699
- Peptide Label: isoform X38
RefSeq Acc Id: XP_038968623   ⟸   XM_039112695
- Peptide Label: isoform X35
RefSeq Acc Id: XP_038968604   ⟸   XM_039112676
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038968629   ⟸   XM_039112701
- Peptide Label: isoform X40
RefSeq Acc Id: XP_038968626   ⟸   XM_039112698
- Peptide Label: isoform X37
RefSeq Acc Id: XP_038968630   ⟸   XM_039112702
- Peptide Label: isoform X41
RefSeq Acc Id: XP_038968624   ⟸   XM_039112696
- Peptide Label: isoform X36
RefSeq Acc Id: XP_038968633   ⟸   XM_039112705
- Peptide Label: isoform X44
RefSeq Acc Id: XP_038968618   ⟸   XM_039112690
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038968628   ⟸   XM_039112700
- Peptide Label: isoform X39
RefSeq Acc Id: XP_038968635   ⟸   XM_039112707
- Peptide Label: isoform X46
RefSeq Acc Id: XP_038968617   ⟸   XM_039112689
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038968621   ⟸   XM_039112693
- Peptide Label: isoform X33
RefSeq Acc Id: XP_038968632   ⟸   XM_039112704
- Peptide Label: isoform X43
RefSeq Acc Id: XP_038968631   ⟸   XM_039112703
- Peptide Label: isoform X42
RefSeq Acc Id: XP_038968634   ⟸   XM_039112706
- Peptide Label: isoform X45
Protein Domains
Fibronectin type-III   Ig-like   Ig-like C2-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694581
Promoter ID:EPDNEW_R5102
Type:multiple initiation site
Name:Nrcam_1
Description:neuronal cell adhesion molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0664,297,908 - 64,297,968EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program