Nrcam (neuronal cell adhesion molecule) - Rat Genome Database

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Gene: Nrcam (neuronal cell adhesion molecule) Ictidomys tridecemlineatus
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Symbol: Nrcam
Name: neuronal cell adhesion molecule
RGD ID: 12726896
Description: ENCODES a protein that exhibits ankyrin binding (inferred); cell-cell adhesion mediator activity (inferred); protein binding involved in heterotypic cell-cell adhesion (inferred); INVOLVED IN clustering of voltage-gated sodium channels (ortholog); neuronal action potential propagation (ortholog); protein localization (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Breast Neoplasms (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC110599192; neuronal cell adhesion molecule, transcript variant X1; neuronal cell adhesion molecule, transcript variant X2; neuronal cell adhesion molecule, transcript variant X3; neuronal cell adhesion molecule, transcript variant X4; neuronal cell adhesion molecule, transcript variant X5; neuronal cell adhesion molecule, transcript variant X6; uncharacterized LOC110599192
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511868,015,682 - 68,287,622 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366531,169,177 - 1,238,140 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366531,167,055 - 1,238,241 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nrcam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511868,015,682 - 68,287,622 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366531,169,177 - 1,238,140 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366531,167,055 - 1,238,241 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRCAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387108,147,649 - 108,456,720 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7108,147,623 - 108,456,717 (-)EnsemblGRCh38hg38GRCh38
GRCh377107,788,094 - 108,097,164 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367107,575,318 - 107,884,062 (-)NCBINCBI36Build 36hg18NCBI36
Build 347107,382,057 - 107,690,734NCBI
Celera7102,595,073 - 102,910,207 (-)NCBICelera
Cytogenetic Map7q31.1NCBI
HuRef7102,150,368 - 102,465,060 (-)NCBIHuRef
CHM1_17107,721,788 - 108,030,155 (-)NCBICHM1_1
T2T-CHM13v2.07109,465,793 - 109,781,370 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27107,149,256 - 107,464,062 (-)NCBI
Nrcam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391244,375,568 - 44,651,977 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1244,375,668 - 44,648,747 (+)EnsemblGRCm39 Ensembl
GRCm381244,328,786 - 44,605,194 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1244,328,885 - 44,601,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371245,429,872 - 45,702,833 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361245,199,270 - 45,469,127 (+)NCBIMGSCv36mm8
Celera1245,683,540 - 45,966,316 (+)NCBICelera
Cytogenetic Map12B2NCBI
cM Map1220.71NCBI
Nrcam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8667,129,723 - 67,425,510 (+)NCBIGRCr8
mRatBN7.2661,402,813 - 61,698,536 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl661,329,863 - 61,702,992 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx661,738,687 - 62,028,234 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0662,053,678 - 62,343,220 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0661,526,131 - 61,817,117 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0664,297,843 - 64,867,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl664,297,888 - 64,864,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0673,887,250 - 74,029,039 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0674,371,672 - 74,446,689 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4663,717,460 - 64,015,522 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1663,720,585 - 64,018,648 (+)NCBI
Celera660,398,331 - 60,686,704 (+)NCBICelera
Cytogenetic Map6q21NCBI
Nrcam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541012,437,248 - 12,518,075 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541012,437,248 - 12,518,083 (-)NCBIChiLan1.0ChiLan1.0
NRCAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,993,564 - 145,307,040 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17193,263,534 - 193,577,010 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07100,129,389 - 100,442,910 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17112,849,823 - 113,107,008 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,849,811 - 112,942,413 (-)Ensemblpanpan1.1panPan2
NRCAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,264,063 - 12,477,247 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,264,063 - 12,475,230 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1811,846,533 - 12,121,649 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01812,473,514 - 12,748,839 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1812,473,516 - 12,748,837 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11812,290,622 - 12,565,756 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01812,211,034 - 12,486,329 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01812,438,363 - 12,713,835 (+)NCBIUU_Cfam_GSD_1.0
NRCAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,928,866 - 108,247,593 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19107,928,866 - 108,248,018 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29118,693,386 - 118,788,883 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NRCAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12177,065,496 - 77,370,774 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2177,065,211 - 77,270,797 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604226,492,852 - 26,798,704 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nrcam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473921,308,457 - 21,633,627 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000007628   ⟹   ENSSTOP00000006820
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366531,169,177 - 1,238,140 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000036066   ⟹   ENSSTOP00000027293
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366531,169,177 - 1,238,140 (-)Ensembl
RefSeq Acc Id: XM_005335930   ⟹   XP_005335987
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511868,015,682 - 68,287,622 (-)NCBI
SpeTri2.0NW_0049366531,167,055 - 1,238,241 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005335987   ⟸   XM_005335930
- UniProtKB: I3MA39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000006820   ⟸   ENSSTOT00000007628
RefSeq Acc Id: ENSSTOP00000027293   ⟸   ENSSTOT00000036066
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007589 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007628.3 UniProtKB/TrEMBL
  ENSSTOT00000036066.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Neurofascin/L1/NrCAM_C UniProtKB/TrEMBL
NCBI Gene Nrcam ENTREZGENE
PANTHER NEURONAL CELL ADHESION MOLECULE UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
Pfam Bravo_FIGEY UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A287D148_ICTTR UniProtKB/TrEMBL
  I3MA39 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-25 Nrcam  neuronal cell adhesion molecule  LOC110599192  uncharacterized LOC110599192  Data merged from RGD:12965251 737654 PROVISIONAL