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Gene: LOC120093443 (U2 spliceosomal RNA) Rattus norvegicus

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Symbol:

LOC120093443

Name:

U2 spliceosomal RNA

RGD ID:

41025079

Description:

Orthologous to human RNU2-25P (RNA, U2 small nuclear 25, pseudogene).

Type:

pseudo (Ensembl: snRNA)

RefSeq Status:

MODEL

Previously known as:

RGD Orthologs

Human

Dog

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	62,327,271 - 62,327,446 (-)	NCBI		GRCr8
mRatBN7.2	6	56,600,113 - 56,600,288 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	56,600,113 - 56,600,288 (-)	NCBI		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	6	56,600,113 - 56,600,288 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0 Ensembl	6	59,461,190 - 59,461,365 (-)	NCBI	Rnor6.0		rn6	Rnor6.0
Cytogenetic Map	6	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

LOC120093443
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	62,327,271 - 62,327,446 (-)	NCBI		GRCr8
mRatBN7.2	6	56,600,113 - 56,600,288 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	56,600,113 - 56,600,288 (-)	NCBI		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	6	56,600,113 - 56,600,288 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0 Ensembl	6	59,461,190 - 59,461,365 (-)	NCBI	Rnor6.0		rn6	Rnor6.0
Cytogenetic Map	6	q21	NCBI

RNU2-25P
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	2,162,763 - 2,162,953 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	2,162,763 - 2,162,953 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	2,162,763 - 2,162,953 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	9	p24.3	NCBI
CHM1_1	9	2,162,876 - 2,163,066 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	2,165,241 - 2,165,431 (-)	NCBI		T2T-CHM13v2.0

LOC119866459
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	27	1,694,916 - 1,695,103 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	45,357,032 - 45,357,219 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	45,357,032 - 45,357,219 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	45,286,123 - 45,286,310 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	45,259,138 - 45,259,325 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	1,049,006 - 1,049,193 (-)	NCBI		UU_Cfam_GSD_1.0

Variants in LOC120093443
1 total Variants

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
9590290	Uminl2	Urine mineral level QTL 2	3.96	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	6	38783989	83783989	Rat
634318	Bw118	Body weight QTL 118	3.55		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight (CMO:0000088)	6	33309549	57730294	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	14368788	59368788	Rat
634307	Bp141	Blood pressure QTL 141	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	35230417	80230417	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	20866422	81133036	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	15107216	107351382	Rat
9590140	Scort4	Serum corticosterone level QTL 4	14.49	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	38783989	83783989	Rat
2292589	Emca10	Estrogen-induced mammary cancer QTL 10		0.048	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	16536140	61536140	Rat
9590306	Scort18	Serum corticosterone level QTL 18	2.88	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	38783989	83783989	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	11735669	72593685	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	20866422	81133036	Rat
1641898	Colcr4	Colorectal carcinoma resistance QTL4	3.71	0.0007	intestine integrity trait (VT:0010554)	well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)	6	20338777	62613667	Rat
634330	Pia16	Pristane induced arthritis QTL 16	3.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	6	45790088	104200226	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	11735669	72593685	Rat
6893340	Cm77	Cardiac mass QTL 77	0.26	0.57	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	33309549	81132889	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	14368788	59368788	Rat
70199	Coreg1	Compensatory renal growth QTL 1	11.8		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	6	35691618	57730540	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	72227641	Rat
1331779	Rf38	Renal function QTL 38	2.876		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	32074428	72227641	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	16536140	71636405	Rat
1300143	Rf14	Renal function QTL 14	2.92		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	34434137	77102317	Rat
1354632	Scl29	Serum cholesterol level QTL 29	3.74		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	6	35098709	71636405	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


GenBank Nucleotide	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000083306

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	56,600,113 - 56,600,288 (-)	Ensembl

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-37755	BioCyc
Ensembl Genes	ENSRNOG00000053799	Ensembl
NCBI Gene	LOC120093443	ENTREZGENE
PhenoGen	LOC120093443	PhenoGen
RatGTEx	ENSRNOG00000053799	RatGTEx
RNAcentral	URS00006E80C1	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-02	LOC120093443	U2 spliceosomal RNA	U2	U2 spliceosomal RNA	Data merged from RGD:15008194	737654	PROVISIONAL
2021-01-27	LOC120093443	U2 spliceosomal RNA			Symbol and Name status set to provisional	70820	PROVISIONAL
2019-11-08	U2	U2 spliceosomal RNA			Symbol and Name status set to provisional	45752	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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