LOC120093443 (U2 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120093443 (U2 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120093443
Name: U2 spliceosomal RNA
RGD ID: 41025079
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U2
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8662,327,271 - 62,327,446 (-)NCBIGRCr8
mRatBN7.2656,600,113 - 56,600,288 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl656,600,113 - 56,600,288 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl656,600,113 - 56,600,288 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl659,461,190 - 59,461,365 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map6q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120093443
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8662,327,271 - 62,327,446 (-)NCBIGRCr8
mRatBN7.2656,600,113 - 56,600,288 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl656,600,113 - 56,600,288 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl656,600,113 - 56,600,288 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl659,461,190 - 59,461,365 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map6q21NCBI
RNU2-25P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3892,162,763 - 2,162,953 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl92,162,763 - 2,162,953 (-)EnsemblGRCh38hg38GRCh38
GRCh3792,162,763 - 2,162,953 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9p24.3NCBI
CHM1_192,162,876 - 2,163,066 (-)NCBICHM1_1
T2T-CHM13v2.092,165,241 - 2,165,431 (-)NCBIT2T-CHM13v2.0
LOC119866459
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha271,694,916 - 1,695,103 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02745,357,032 - 45,357,219 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2745,357,032 - 45,357,219 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12745,286,123 - 45,286,310 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02745,259,138 - 45,259,325 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0271,049,006 - 1,049,193 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC120093443
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000083306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl656,600,113 - 56,600,288 (-)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-37755 BioCyc
Ensembl Genes ENSRNOG00000053799 Ensembl
NCBI Gene LOC120093443 ENTREZGENE
PhenoGen LOC120093443 PhenoGen
RatGTEx ENSRNOG00000053799 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120093443  U2 spliceosomal RNA  U2  U2 spliceosomal RNA  Data merged from RGD:15008194 737654 PROVISIONAL
2021-01-27 LOC120093443  U2 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U2  U2 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL