Dld (dihydrolipoamide dehydrogenase) - Rat Genome Database

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Gene: Dld (dihydrolipoamide dehydrogenase) Rattus norvegicus
Analyze
Symbol: Dld
Name: dihydrolipoamide dehydrogenase
RGD ID: 735073
Description: Enables dihydrolipoyl dehydrogenase activity; lipoamide binding activity; and nucleotide binding activity. Involved in carboxylic acid metabolic process and dihydrolipoamide metabolic process. Part of oxoglutarate dehydrogenase complex and pyruvate dehydrogenase complex. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human DLD (dihydrolipoamide dehydrogenase); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; INTERACTS WITH (aminooxy)acetic acid; (R)-lipoic acid; 1,3-dinitrobenzene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dihydrolipoamide dehydrogenase (E3 component of pyruvate dehydrogenase complex, 2-oxo-glutarate complex, branched chain keto acid dehydrogenase complex); dihydrolipoyl dehydrogenase, mitochondrial
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,631,686 - 53,655,059 (-)NCBIGRCr8
mRatBN7.2647,904,153 - 47,924,814 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl647,903,914 - 47,924,795 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx648,209,787 - 48,230,406 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,524,721 - 48,545,340 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0647,967,038 - 47,987,624 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0650,597,677 - 50,618,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,597,677 - 50,618,694 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,273,427 - 59,293,925 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,185,188 - 49,205,894 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1649,188,314 - 49,209,020 (-)NCBI
Celera647,106,161 - 47,126,575 (-)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(aminooxy)acetic acid  (EXP)
(R)-lipoic acid  (EXP)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2,2-tetramine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-dinitrotoluene  (EXP)
3',5'-cyclic AMP  (EXP)
5-methoxyindole-2-carboxylic acid  (EXP)
acetamide  (EXP)
acrolein  (ISO)
alpha-pinene  (ISO)
AM-251  (EXP,ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP,ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP,ISO)
buspirone  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
clofibrate  (EXP)
clofibric acid  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibenzo[a,l]pyrene  (ISO)
dicrotophos  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
ethylenediaminetetraacetic acid  (ISO)
fenvalerate  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fructose  (EXP)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
Hexachloro-1,3-butadiene  (EXP)
hyaluronic acid  (EXP)
hydrogen peroxide  (EXP)
indometacin  (EXP)
irinotecan  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
L-ascorbic acid  (ISO)
lead diacetate  (EXP)
lead(0)  (EXP)
lipoic acid  (EXP)
manganese atom  (EXP)
manganese(0)  (EXP)
manganese(II) chloride  (EXP)
methamphetamine  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
Nonylphenol  (EXP)
ochratoxin A  (ISO)
oxybenzone  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctanoic acid  (ISO)
phlorizin  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (EXP)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
sarin  (EXP)
sodium arsenite  (EXP)
streptozocin  (EXP)
temozolomide  (ISO)
thapsigargin  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
zearalenone  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
2-aminoadipic 2-oxoadipic aciduria pathway  (ISO)
3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway  (ISO)
3-hydroxyisobutyric aciduria pathway  (ISO)
3-methylcrotonyl CoA carboxylase 1 deficiency pathway  (ISO)
3-methylglutaconic aciduria type 1 pathway  (ISO)
3-methylglutaconic aciduria type 3 pathway   (ISO)
citric acid cycle pathway  (IEA,ISO)
dihydropyrimidine dehydrogenase deficiency pathway  (ISO)
dimethylglycine dehydrogenase deficiency pathway   (ISO)
folate cycle metabolic pathway  (ISO)
fumaric aciduria pathway   (ISO)
gluconeogenesis pathway  (IEA)
glutaric aciduria type I pathway  (ISO)
glycine, serine and threonine metabolic pathway   (IEA)
glycolysis pathway  (IEA)
glycolysis/gluconeogenesis pathway  (IEA)
hyperlysinemia pathway  (ISO)
isobutyryl-CoA dehydrogenase deficiency pathway  (ISO)
isovaleric acidemia pathway  (ISO)
Leigh disease pathway  (ISO)
lysine degradation pathway  (ISO)
malonic aciduria pathway  (ISO)
maple syrup urine disease pathway  (ISO)
methylmalonate semialdehyde dehydrogenase deficiency pathway  (ISO)
methylmalonic acidemia pathway  (ISO)
methylmalonic aciduria, cobalamin-related pathway  (ISO)
mitochondrial complex II deficiency pathway  (ISO)
nonketotic hyperglycinemia pathway  (ISO)
primary hyperoxaluria type 2 pathway  (ISO)
propanoate metabolic pathway  (ISO)
propionic acidemia pathway  (ISO)
pyruvate decarboxylase deficiency pathway  (ISO)
pyruvate dehydrogenase E1 deficiency pathway  (ISO)
pyruvate dehydrogenase E2 deficiency pathway  (ISO)
pyruvate dehydrogenase E3 deficiency pathway  (ISO)
pyruvate kinase deficiency of red cells pathway   (ISO)
pyruvate metabolic pathway  (IEA,ISO)
saccharopinuria pathway  (ISO)
sarcosinemia pathway  (ISO)
valine, leucine and isoleucine degradation pathway  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Cytosolic and mitochondrial systems for NADH- and NADPH-dependent reduction of alpha-lipoic acid. Haramaki N, etal., Free Radic Biol Med. 1997;22(3):535-42.
3. Mice deficient in dihydrolipoamide dehydrogenase show increased vulnerability to MPTP, malonate and 3-nitropropionic acid neurotoxicity. Klivenyi P, etal., J Neurochem 2004 Mar;88(6):1352-60.
4. Spectral properties of fluorescent flavoproteins of isolated rat liver mitochondria. Kunz WS FEBS Lett. 1986 Jan 20;195(1-2):92-6.
5. Pretranslational regulation of pyruvate dehydrogenase complex subunits in white adipose tissue during the suckling-weaning transition in the rat. Maury J, etal., Biochem J. 1995 Oct 15;311 ( Pt 2):531-5.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Purification, resolution, and reconstitution of rat liver branched-chain alpha-keto acid dehydrogenase complex. Ono K, etal., J Biochem. 1987 Jan;101(1):19-27.
9. Regulation of mammalian pyruvate dehydrogenase complex by phosphorylation: complexity of multiple phosphorylation sites and kinases. Patel MS and Korotchkina LG, Exp Mol Med. 2001 Dec 31;33(4):191-7.
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
12. GOA pipeline RGD automated data pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. The alpha-ketoglutarate dehydrogenase complex. Sheu KF and Blass JP, Ann N Y Acad Sci. 1999;893:61-78.
16. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
17. Compartmentalization of Mammalian folate-mediated one-carbon metabolism. Tibbetts AS and Appling DR, Annu Rev Nutr. 2010 Aug 21;30:57-81. doi: 10.1146/annurev.nutr.012809.104810.
18. Changes in dihydrolipoamide dehydrogenase expression and activity during postnatal development and aging in the rat brain. Yan LJ, etal., Mech Ageing Dev. 2008 May;129(5):282-90. Epub 2008 Feb 6.
Additional References at PubMed
PMID:9242632   PMID:9405644   PMID:14651853   PMID:15489334   PMID:15888450   PMID:16442803   PMID:17404228   PMID:17634366   PMID:18614015   PMID:18661235   PMID:20833797   PMID:25931508  
PMID:25981801   PMID:26316108   PMID:27888691   PMID:29211711   PMID:31904090  


Genomics

Comparative Map Data
Dld
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,631,686 - 53,655,059 (-)NCBIGRCr8
mRatBN7.2647,904,153 - 47,924,814 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl647,903,914 - 47,924,795 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx648,209,787 - 48,230,406 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,524,721 - 48,545,340 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0647,967,038 - 47,987,624 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0650,597,677 - 50,618,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,597,677 - 50,618,694 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,273,427 - 59,293,925 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,185,188 - 49,205,894 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1649,188,314 - 49,209,020 (-)NCBI
Celera647,106,161 - 47,126,575 (-)NCBICelera
Cytogenetic Map6q16NCBI
DLD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,891,107 - 107,921,198 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7107,891,162 - 107,931,730 (+)EnsemblGRCh38hg38GRCh38
GRCh377107,531,552 - 107,561,643 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367107,318,822 - 107,348,879 (+)NCBINCBI36Build 36hg18NCBI36
Build 347107,125,561 - 107,154,360NCBI
Celera7102,338,571 - 102,368,626 (+)NCBICelera
Cytogenetic Map7q31.1NCBI
HuRef7101,894,030 - 101,924,084 (+)NCBIHuRef
CHM1_17107,465,307 - 107,495,360 (+)NCBICHM1_1
T2T-CHM13v2.07109,209,306 - 109,239,391 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27106,892,712 - 106,922,768 (+)NCBI
Dld
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,381,561 - 31,401,470 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,381,276 - 31,401,452 (-)EnsemblGRCm39 Ensembl
GRCm381231,331,562 - 31,351,471 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,331,277 - 31,351,453 (-)EnsemblGRCm38mm10GRCm38
MGSCv371232,016,427 - 32,036,302 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361231,917,620 - 31,937,454 (-)NCBIMGSCv36mm8
Celera1232,779,653 - 32,799,528 (-)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1213.43NCBI
Dld
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541012,212,963 - 12,238,561 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541012,212,981 - 12,238,561 (+)NCBIChiLan1.0ChiLan1.0
DLD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,734,103 - 144,766,013 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17193,004,072 - 193,035,982 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0799,872,020 - 99,901,884 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17112,593,934 - 112,623,629 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,593,934 - 112,623,629 (+)Ensemblpanpan1.1panPan2
DLD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,703,340 - 12,734,408 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,703,341 - 12,734,479 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1812,347,573 - 12,378,642 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01812,974,872 - 13,005,942 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1812,974,400 - 13,006,019 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11812,791,797 - 12,823,078 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01812,712,079 - 12,743,105 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01812,939,857 - 12,971,151 (-)NCBIUU_Cfam_GSD_1.0
Dld
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,123,461 - 55,147,834 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,243,829 - 16,271,616 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,247,230 - 16,271,597 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DLD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,642,095 - 107,673,583 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19107,642,129 - 107,668,443 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29118,410,873 - 118,437,344 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DLD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,795,573 - 76,825,504 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,795,592 - 76,824,923 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604227,037,869 - 27,067,933 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dld
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473921,846,733 - 21,873,700 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473921,842,897 - 21,873,334 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dld
100 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:303
Count of miRNA genes:194
Interacting mature miRNAs:226
Transcripts:ENSRNOT00000008980
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat

Markers in Region
RH127918  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2647,904,813 - 47,905,021 (+)MAPPERmRatBN7.2
Rnor_6.0650,598,338 - 50,598,545NCBIRnor6.0
Rnor_5.0659,273,565 - 59,273,772UniSTSRnor5.0
RGSC_v3.4649,185,326 - 49,185,533UniSTSRGSC3.4
Celera647,106,822 - 47,107,029UniSTS
Cytogenetic Map6q16UniSTS
RH127725  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,464,825 - 132,465,019 (+)MAPPERmRatBN7.2
mRatBN7.2647,904,641 - 47,904,835 (+)MAPPERmRatBN7.2
Rnor_6.0650,598,166 - 50,598,359NCBIRnor6.0
Rnor_6.06138,190,294 - 138,190,487NCBIRnor6.0
Rnor_5.0659,273,393 - 59,273,586UniSTSRnor5.0
Rnor_5.06147,182,750 - 147,182,943UniSTSRnor5.0
RGSC_v3.4649,185,154 - 49,185,347UniSTSRGSC3.4
RGSC_v3.46138,387,490 - 138,387,683UniSTSRGSC3.4
Celera647,106,650 - 47,106,843UniSTS
RH 3.4 Map6284.7UniSTS
Cytogenetic Map6q32UniSTS
Cytogenetic Map6q16UniSTS
RH130917  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6q16UniSTS
RH143660  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2647,911,312 - 47,911,423 (+)MAPPERmRatBN7.2
Rnor_6.0650,605,193 - 50,605,303NCBIRnor6.0
Rnor_5.0659,280,420 - 59,280,530UniSTSRnor5.0
RGSC_v3.4649,192,389 - 49,192,499UniSTSRGSC3.4
Celera647,113,073 - 47,113,183UniSTS
RH 3.4 Map6288.4UniSTS
Cytogenetic Map6q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_199385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC062069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM044626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM046215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM087994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM093110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM100976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM139628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000008980   ⟹   ENSRNOP00000008980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl647,903,914 - 47,924,789 (-)Ensembl
Rnor_6.0 Ensembl650,597,677 - 50,618,694 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103149   ⟹   ENSRNOP00000084511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl647,904,514 - 47,923,223 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103902   ⟹   ENSRNOP00000083816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl647,904,514 - 47,924,555 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117539   ⟹   ENSRNOP00000088991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl647,904,684 - 47,924,795 (-)Ensembl
RefSeq Acc Id: NM_199385   ⟹   NP_955417
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,631,686 - 53,652,347 (-)NCBI
mRatBN7.2647,904,153 - 47,924,814 (-)NCBI
Rnor_6.0650,597,677 - 50,618,694 (-)NCBI
Rnor_5.0659,273,427 - 59,293,925 (-)NCBI
RGSC_v3.4649,185,188 - 49,205,894 (-)RGD
Celera647,106,161 - 47,126,575 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764590   ⟹   XP_008762812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,632,041 - 53,652,177 (-)NCBI
mRatBN7.2647,904,508 - 47,924,520 (-)NCBI
Rnor_6.0650,598,017 - 50,618,398 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111961   ⟹   XP_038967889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,632,041 - 53,652,219 (-)NCBI
mRatBN7.2647,904,508 - 47,924,686 (-)NCBI
RefSeq Acc Id: XM_063261659   ⟹   XP_063117729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,632,041 - 53,655,059 (-)NCBI
RefSeq Acc Id: XM_063261660   ⟹   XP_063117730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8653,632,041 - 53,641,323 (-)NCBI
RefSeq Acc Id: NP_955417   ⟸   NM_199385
- Peptide Label: precursor
- UniProtKB: Q6P6R2 (UniProtKB/Swiss-Prot),   A6HB44 (UniProtKB/TrEMBL),   A0A8L2Q3R1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762812   ⟸   XM_008764590
- Peptide Label: isoform X2
- UniProtKB: A0A8L2Q3R1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008980   ⟸   ENSRNOT00000008980
RefSeq Acc Id: XP_038967889   ⟸   XM_039111961
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZXS2 (UniProtKB/TrEMBL),   A0A8L2Q3R1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084511   ⟸   ENSRNOT00000103149
Ensembl Acc Id: ENSRNOP00000088991   ⟸   ENSRNOT00000117539
Ensembl Acc Id: ENSRNOP00000083816   ⟸   ENSRNOT00000103902
RefSeq Acc Id: XP_063117729   ⟸   XM_063261659
- Peptide Label: isoform X1
- UniProtKB: Q6P6R2 (UniProtKB/Swiss-Prot),   A0A8L2Q3R1 (UniProtKB/TrEMBL),   A6HB44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117730   ⟸   XM_063261660
- Peptide Label: isoform X4
Protein Domains
FAD/NAD(P)-binding   Pyridine nucleotide-disulphide oxidoreductase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P6R2-F1-model_v2 AlphaFold Q6P6R2 1-509 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694542
Promoter ID:EPDNEW_R5066
Type:initiation region
Name:Dld_1
Description:dihydrolipoamide dehydrogenase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0650,618,667 - 50,618,727EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735073 AgrOrtholog
BioCyc Gene G2FUF-37921 BioCyc
BioCyc Pathway GLYCINE-SYN2-PWY [glycine biosynthesis II] BioCyc
  GLYCLEAV-PWY [glycine cleavage] BioCyc
  PWY-5046 [2-oxoisovalerate decarboxylation to isobutanoyl-CoA] BioCyc
  PWY-5084 [2-oxoglutarate decarboxylation to succinyl-CoA] BioCyc
  PYRUVDEHYD-PWY [pyruvate decarboxylation to acetyl CoA I] BioCyc
BioCyc Pathway Image GLYCINE-SYN2-PWY BioCyc
  GLYCLEAV-PWY BioCyc
  PWY-5046 BioCyc
  PWY-5084 BioCyc
  PYRUVDEHYD-PWY BioCyc
Ensembl Genes ENSRNOG00000006364 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00055005883 UniProtKB/Swiss-Prot
  ENSRNOG00060008372 UniProtKB/Swiss-Prot
  ENSRNOG00065011101 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000008980.7 UniProtKB/TrEMBL
  ENSRNOT00000103149.1 UniProtKB/TrEMBL
  ENSRNOT00000103902.1 UniProtKB/TrEMBL
  ENSRNOT00000117539.1 UniProtKB/TrEMBL
  ENSRNOT00055009532 UniProtKB/Swiss-Prot
  ENSRNOT00060014023 UniProtKB/Swiss-Prot
  ENSRNOT00065018002 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.390.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.50.50.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5599215 IMAGE-MGC_LOAD
InterPro Class-I_Pyr_Nuc-Dis_Oxidored UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAD/NAD-binding_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAD/NAD-linked_Rdtase_dimer_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipoamide_DH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pyr_nuc-diS_OxRdtase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pyr_nucl-diS_OxRdtase_dimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pyr_OxRdtase_I_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:298942 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72602 IMAGE-MGC_LOAD
NCBI Gene 298942 ENTREZGENE
PANTHER DIHYDROLIPOYL DEHYDROGENASE, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DISULFIDE OXIDOREDUCTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pyr_redox_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pyr_redox_dim UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dld PhenoGen
PIRSF Mercury_reductase_MerA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS FADPNR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PNDRDTASEI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PYRIDINE_REDOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006364 RatGTEx
  ENSRNOG00055005883 RatGTEx
  ENSRNOG00060008372 RatGTEx
  ENSRNOG00065011101 RatGTEx
Superfamily-SCOP SSF51905 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55424 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZXS2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A971_RAT UniProtKB/TrEMBL
  A0A8I6GBX4_RAT UniProtKB/TrEMBL
  A0A8L2Q3R1 ENTREZGENE, UniProtKB/TrEMBL
  A6HB44 ENTREZGENE, UniProtKB/TrEMBL
  A6HB45_RAT UniProtKB/TrEMBL
  DLDH_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-08 Dld  dihydrolipoamide dehydrogenase    dihydrolipoamide dehydrogenase (E3 component of pyruvate dehydrogenase complex, 2-oxo-glutarate complex, branched chain keto acid dehydrogenase complex)  Name updated 1299863 APPROVED