LOC120093439 (small nucleolar RNA SNORA17) - Rat Genome Database

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Gene: LOC120093439 (small nucleolar RNA SNORA17) Rattus norvegicus
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Symbol: LOC120093439
Name: small nucleolar RNA SNORA17
RGD ID: 41262445
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AABR07063777.1
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8650,676,943 - 50,677,077 (+)NCBIGRCr8
mRatBN7.2644,948,543 - 44,948,677 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl644,948,543 - 44,948,677 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl647,586,828 - 47,586,962 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63432335751121479Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat

1 to 10 of 24 rows





RefSeq Transcripts XR_005486499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000088847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl644,948,543 - 44,948,677 (+)Ensembl
RefSeq Acc Id: XR_005486499
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,676,943 - 50,677,077 (+)NCBI
mRatBN7.2644,948,543 - 44,948,677 (+)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-37975 BioCyc
Ensembl Genes ENSRNOG00000055363 Ensembl
NCBI Gene LOC120093439 ENTREZGENE
PhenoGen LOC120093439 PhenoGen
RatGTEx ENSRNOG00000055363 RatGTEx
RNAcentral URS000062D8C9 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120093439  small nucleolar RNA SNORA17  AABR07063777.1    Data merged from RGD:15009405 737654 PROVISIONAL
2021-01-27 LOC120093439  small nucleolar RNA SNORA17      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07063777.1        Symbol and Name status set to provisional 45752 PROVISIONAL