D6Got90 Marker Search Result - Rat Genome Database

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Marker: D6Got90

Symbol: D6Got90
Previously known as: oxsts539; OT77.05; 
RGD ID: 44100
Expected Size: 227 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2670,277,257 - 70,277,484 (+)MAPPERmRatBN7.2
Rnor_6.0673,646,974 - 73,647,200NCBIRnor6.0
Rnor_5.0683,203,912 - 83,204,138UniSTSRnor5.0
RGSC_v3.4673,001,677 - 73,001,904RGDRGSC3.4
RGSC_v3.4673,001,678 - 73,001,904UniSTSRGSC3.4
RGSC_v3.1673,004,804 - 73,005,030RGD
Celera669,138,427 - 69,138,645UniSTS
RH 3.4 Map6516.5UniSTS
RH 3.4 Map6516.5RGD
RH 2.0 Map6669.7RGD
Cytogenetic Map6q23UniSTS
Is Marker For: Genes:   Akap6  




#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. UniSTS Pipeline RGD automated pipelines
4. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
5. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer CTCACCGTTGCAACAAGCT
Reverse Primer GAAGACACCACCGTTGGG
 


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
69412Akap6A-kinase anchoring protein 667018410170624369Rat
GenBank Nucleotide AU027723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 26 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)66304056271636266Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat

1 to 10 of 26 rows


Database
Acc Id
Source(s)
NCBI Gene 64553 UniSTS