Ahr (aryl hydrocarbon receptor) - Rat Genome Database

Name: Ahr
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ahr (aryl hydrocarbon receptor) Rattus norvegicus

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Symbol:

Ahr

Name:

aryl hydrocarbon receptor

Description:

Exhibits nuclear receptor activity and toxic substance binding activity. Involved in several processes, including cellular response to organic cyclic compound; negative regulation of alkaline phosphatase activity; and regulation of cellular macromolecule biosynthetic process. Localizes to cytosol and nucleus. Human ortholog(s) of this gene implicated in retinitis pigmentosa. Orthologous to human AHR (aryl hydrocarbon receptor); PARTICIPATES IN aryl hydrocarbon receptor signaling pathway; INTERACTS WITH (+)-schisandrin B; (S)-colchicine; 1,10-phenanthroline.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

ah receptor

Orthologs:

Homo sapiens (human) : AHR (aryl hydrocarbon receptor) HGNC Alliance
Mus musculus (house mouse) : Ahr (aryl-hydrocarbon receptor) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ahr (aryl hydrocarbon receptor)
Pan paniscus (bonobo/pygmy chimpanzee) : AHR (aryl hydrocarbon receptor)
Canis lupus familiaris (dog) : AHR (aryl hydrocarbon receptor)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ahr (aryl hydrocarbon receptor)
Sus scrofa (pig) : AHR (aryl hydrocarbon receptor)
Chlorocebus sabaeus (African green monkey) : AHR (aryl hydrocarbon receptor)
Heterocephalus glaber (naked mole-rat) : Ahr (aryl hydrocarbon receptor)

more info ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AHR (aryl hydrocarbon receptor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ahr (aryl-hydrocarbon receptor)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Ahr (aryl hydrocarbon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AHR (aryl hydrocarbon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AHR (aryl hydrocarbon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ahr (aryl hydrocarbon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AHR (aryl hydrocarbon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	AHR (aryl hydrocarbon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ahr (aryl hydrocarbon receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ahr (aryl-hydrocarbon receptor)	Alliance	DIOPT (InParanoid\|PhylomeDB\|PANTHER\|OrthoInspector\|TreeFam\|OrthoFinder\|Hieranoid)
Homo sapiens (human):	AHR (aryl hydrocarbon receptor)	Alliance	DIOPT (InParanoid\|PhylomeDB\|HGNC\|TreeFam\|OrthoInspector\|OrthoFinder\|PANTHER\|Hieranoid)
Danio rerio (zebrafish):	ahr1b (aryl hydrocarbon receptor 1b)	Alliance	DIOPT (InParanoid\|TreeFam\|OrthoInspector)
Caenorhabditis elegans (roundworm):	ahr-1	Alliance	DIOPT (InParanoid\|PhylomeDB\|PANTHER\|TreeFam\|OrthoInspector\|Hieranoid)
Drosophila melanogaster (fruit fly):	ss	Alliance	DIOPT (PhylomeDB\|PANTHER\|OrthoInspector\|TreeFam\|Hieranoid)

Allele / Splice:

Ahr^em1Sage Ahr^em1Soar

Genetic Models:

SD-Nr1i2^em1Sage Nr1i3^em1Sage Ahr^em1Sage SD-Ahr^em1Sage SD-Ahr^em1Soar

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	6	54,963,990 - 55,001,806 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	54,963,990 - 55,001,464 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	64,589,066 - 64,624,078 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	54,205,104 - 54,240,268 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	54,206,846 - 54,243,423 (-)	NCBI
Celera	6	51,391,870 - 51,429,719 (-)	NCBI		Celera
Cytogenetic Map	6	q16	NCBI
RH 3.4 Map	6	350.2	RGD

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Disease Annotations

Gene-Chemical Interaction Annotations

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - ClinVar

Imported Annotations - CTD

Imported Annotations - OMIM

RGD Manual Annotations