Hdac9 (histone deacetylase 9) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Community Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Hdac9 (histone deacetylase 9) Rattus norvegicus
Analyze
Symbol: Hdac9
Name: histone deacetylase 9
RGD ID: 1310748
Description: Predicted to enable several functions, including enzyme binding activity; histone deacetylase activity; and transcription corepressor activity. Involved in neuron differentiation and response to amphetamine. Predicted to be located in cytoplasm and nucleus. Predicted to be part of histone methyltransferase complex and transcription regulator complex. Biomarker of middle cerebral artery infarction. Orthologous to human HDAC9 (histone deacetylase 9); PARTICIPATES IN histone modification pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: histone deacetylase 9-like; LOC102552384; LOC314040; LOC500642; MEF2-interacting transcriptional repressor; MITR; RGD1310748; RGD1563092; similar to histone deacetylase 9 isoform 5; similar to histone deacetylase-related protein; similar to histone decetylase 9b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2650,762,074 - 51,624,311 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl650,763,590 - 51,625,333 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx651,044,408 - 51,614,840 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0651,359,348 - 51,929,789 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0650,815,529 - 51,385,069 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0653,487,367 - 54,358,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl653,488,883 - 54,059,119 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0663,109,688 - 63,978,416 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4653,066,308 - 53,114,402 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera649,930,173 - 50,491,018 (-)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3,5-diethoxycarbonyl-1,4-dihydrocollidine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
astragaloside IV  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
berberine  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
diallyl trisulfide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
fumaraldehyde  (ISO)
gemcitabine  (ISO)
genistein  (ISO)
glycidol  (EXP)
glyphosate  (EXP)
hydroquinone  (ISO)
indometacin  (ISO)
iron dichloride  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (EXP)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
oxybenzone  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
PD 0325901  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
pirfenidone  (ISO)
resveratrol  (ISO)
S-adenosyl-L-methioninate  (ISO)
S-adenosyl-L-methionine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
valsartan  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Upregulation of class II histone deacetylases mRNA during neural differentiation of cultured rat hippocampal progenitor cells. Ajamian F, etal., Neurosci Lett 2003 Jul 31;346(1-2):57-60.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. HDAC4/5-HMGB1 signalling mediated by NADPH oxidase activity contributes to cerebral ischaemia/reperfusion injury. He M, etal., J Cell Mol Med. 2013 Apr;17(4):531-42. doi: 10.1111/jcmm.12040. Epub 2013 Mar 11.
4. Differential effects of binge methamphetamine injections on the mRNA expression of histone deacetylases (HDACs) in the rat striatum. Omonijo O, etal., Neurotoxicology. 2014 Oct 27;45C:178-184. doi: 10.1016/j.neuro.2014.10.008.
5. Physical and functional HAT/HDAC interplay regulates protein acetylation balance. Peserico A and Simone C, J Biomed Biotechnol. 2011;2011:371832. doi: 10.1155/2011/371832. Epub 2010 Dec 5.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. YY1 protects cardiac myocytes from pathologic hypertrophy by interacting with HDAC5. Sucharov CC, etal., Mol Biol Cell. 2008 Oct;19(10):4141-53. doi: 10.1091/mbc.E07-12-1217. Epub 2008 Jul 16.
Additional References at PubMed
PMID:10655483   PMID:10748098   PMID:11022042   PMID:11390982   PMID:11535832   PMID:12242305   PMID:12590135   PMID:15367668   PMID:15567413   PMID:15632090   PMID:16260608   PMID:16280321  
PMID:17360565   PMID:17786239   PMID:19303849   PMID:19351956   PMID:20188095   PMID:20525066   PMID:21746928   PMID:26865248   PMID:28572913   PMID:28855441   PMID:33480300   PMID:35927544  
PMID:36927982  


Genomics

Comparative Map Data
Hdac9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2650,762,074 - 51,624,311 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl650,763,590 - 51,625,333 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx651,044,408 - 51,614,840 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0651,359,348 - 51,929,789 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0650,815,529 - 51,385,069 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0653,487,367 - 54,358,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl653,488,883 - 54,059,119 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0663,109,688 - 63,978,416 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4653,066,308 - 53,114,402 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera649,930,173 - 50,491,018 (-)NCBICelera
Cytogenetic Map6q16NCBI
HDAC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38718,086,825 - 19,002,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl718,086,949 - 19,002,416 (+)EnsemblGRCh38hg38GRCh38
GRCh37718,126,448 - 19,042,039 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36718,501,894 - 19,003,518 (+)NCBINCBI36Build 36hg18NCBI36
Build 34718,309,165 - 18,808,925NCBI
Celera718,515,050 - 19,016,663 (+)NCBICelera
Cytogenetic Map7p21.1NCBI
HuRef718,012,000 - 18,921,632 (+)NCBIHuRef
CHM1_1718,127,641 - 19,037,820 (+)NCBICHM1_1
T2T-CHM13v2.0718,216,502 - 19,132,425 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2718,254,965 - 19,088,496 (+)NCBI
Hdac9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391234,097,579 - 34,967,094 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1234,097,579 - 34,967,094 (-)EnsemblGRCm39 Ensembl
GRCm381234,047,580 - 34,917,095 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1234,047,580 - 34,917,095 (-)EnsemblGRCm38mm10GRCm38
MGSCv371235,056,362 - 35,213,754 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361234,956,744 - 35,114,121 (-)NCBIMGSCv36mm8
Celera1235,799,634 - 35,959,002 (-)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1215.06NCBI
Hdac9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541021,245,562 - 21,932,023 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541021,046,312 - 21,932,029 (+)NCBIChiLan1.0ChiLan1.0
HDAC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1771,243,859 - 72,155,637 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0718,740,580 - 19,653,615 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1718,138,665 - 18,975,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl718,138,761 - 18,970,717 (+)Ensemblpanpan1.1panPan2
HDAC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11432,469,349 - 33,310,439 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1432,588,414 - 33,304,387 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1431,927,168 - 32,838,858 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01432,319,281 - 33,231,263 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1432,517,048 - 33,226,313 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11432,429,177 - 33,340,446 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01432,129,507 - 33,041,580 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01432,446,823 - 33,358,024 (+)NCBIUU_Cfam_GSD_1.0
Hdac9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511876,722,917 - 77,572,050 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365464,781,304 - 5,246,939 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365464,398,003 - 5,247,649 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDAC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl987,449,359 - 88,186,961 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1987,164,400 - 88,192,803 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21278,058,419 - 278,182,393 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HDAC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12139,159,270 - 39,859,403 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604264,474,174 - 65,386,992 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hdac9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473911,431,888 - 11,941,809 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473911,431,463 - 12,162,073 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hdac9
5147 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat

Markers in Region
D6Rat132  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2650,818,445 - 50,818,672 (+)MAPPERmRatBN7.2
Rnor_6.0653,553,892 - 53,554,118NCBIRnor6.0
Rnor_5.0663,175,341 - 63,175,567UniSTSRnor5.0
RGSC_v3.4652,753,065 - 52,753,434RGDRGSC3.4
RGSC_v3.4652,753,156 - 52,753,382UniSTSRGSC3.4
RGSC_v3.1652,756,282 - 52,756,508RGD
Celera649,985,387 - 49,985,682UniSTS
RH 3.4 Map6335.4RGD
RH 3.4 Map6335.4UniSTS
RH 2.0 Map6522.1RGD
SHRSP x BN Map639.8098RGD
Cytogenetic Map6q16UniSTS
D6Got65  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2650,818,520 - 50,818,655 (+)MAPPERmRatBN7.2
Rnor_6.0653,553,967 - 53,554,101NCBIRnor6.0
Rnor_5.0663,175,416 - 63,175,550UniSTSRnor5.0
RGSC_v3.4652,753,230 - 52,753,362RGDRGSC3.4
RGSC_v3.4652,753,231 - 52,753,365UniSTSRGSC3.4
RGSC_v3.1652,756,356 - 52,756,488RGD
RH 3.4 Map6344.8UniSTS
RH 3.4 Map6344.8RGD
RH 2.0 Map6529.6RGD
Cytogenetic Map6q16UniSTS
BF386843  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2650,953,672 - 50,953,836 (+)MAPPERmRatBN7.2
Rnor_6.0653,687,765 - 53,687,928NCBIRnor6.0
Rnor_5.0663,309,054 - 63,309,217UniSTSRnor5.0
RGSC_v3.4652,889,164 - 52,889,327UniSTSRGSC3.4
Celera650,120,625 - 50,120,788UniSTS
RH 3.4 Map6348.4UniSTS
Cytogenetic Map6q16UniSTS
ha3186  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2651,310,262 - 51,311,668 (+)MAPPERmRatBN7.2
Rnor_6.0654,044,210 - 54,045,615NCBIRnor6.0
Rnor_5.0663,664,705 - 63,666,110UniSTSRnor5.0
RGSC_v3.4653,267,319 - 53,268,724UniSTSRGSC3.4
Celera650,476,112 - 50,477,517UniSTS
Cytogenetic Map6q16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 4 1
Low 2 43 32 16 11 16 8 10 70 31 40 11 8
Below cutoff 1 25 25 25 1 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001200045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB558551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB558552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC721120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000005521   ⟹   ENSRNOP00000005521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl650,763,590 - 51,325,171 (-)Ensembl
Rnor_6.0 Ensembl653,488,883 - 54,059,119 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086038   ⟹   ENSRNOP00000071341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl650,780,981 - 51,325,171 (-)Ensembl
Rnor_6.0 Ensembl653,598,866 - 54,020,406 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095056   ⟹   ENSRNOP00000082269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl650,763,590 - 51,325,171 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098095   ⟹   ENSRNOP00000090853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl651,087,942 - 51,625,333 (-)Ensembl
RefSeq Acc Id: NM_001200045   ⟹   NP_001186974
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,763,590 - 51,325,171 (-)NCBI
Rnor_6.0653,488,883 - 54,059,119 (-)NCBI
Rnor_5.0663,109,688 - 63,978,416 (-)NCBI
Celera649,930,173 - 50,491,018 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764611   ⟹   XP_008762833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,242,989 (-)NCBI
Rnor_6.0653,487,367 - 53,978,851 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764614   ⟹   XP_008762836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,308 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764615   ⟹   XP_008762837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2651,087,778 - 51,624,291 (-)NCBI
Rnor_6.0653,821,198 - 54,358,688 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764616   ⟹   XP_008762838
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,305 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594358   ⟹   XP_017449847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594359   ⟹   XP_017449848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594360   ⟹   XP_017449849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,623,740 (-)NCBI
Rnor_6.0653,487,367 - 54,358,333 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594361   ⟹   XP_017449850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,307 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594362   ⟹   XP_017449851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594363   ⟹   XP_017449852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594364   ⟹   XP_017449853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,242,989 (-)NCBI
Rnor_6.0653,487,367 - 53,978,851 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594365   ⟹   XP_017449854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594368   ⟹   XP_017449857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2651,087,778 - 51,624,287 (-)NCBI
Rnor_6.0653,821,198 - 54,358,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594370   ⟹   XP_017449859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2651,087,778 - 51,624,291 (-)NCBI
Rnor_6.0653,821,198 - 54,358,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594371   ⟹   XP_017449860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2651,087,778 - 51,624,286 (-)NCBI
Rnor_6.0653,821,198 - 54,358,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112935   ⟹   XP_038968863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,309 (-)NCBI
RefSeq Acc Id: XM_039112936   ⟹   XP_038968864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,426,258 (-)NCBI
RefSeq Acc Id: XM_039112937   ⟹   XP_038968865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,426,258 (-)NCBI
RefSeq Acc Id: XM_039112938   ⟹   XP_038968866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,424,814 (-)NCBI
RefSeq Acc Id: XM_039112939   ⟹   XP_038968867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,307 (-)NCBI
RefSeq Acc Id: XM_039112940   ⟹   XP_038968868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,426,257 (-)NCBI
RefSeq Acc Id: XM_039112941   ⟹   XP_038968869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,426,258 (-)NCBI
RefSeq Acc Id: XM_039112942   ⟹   XP_038968870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,424,769 (-)NCBI
RefSeq Acc Id: XM_039112943   ⟹   XP_038968871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,383,537 (-)NCBI
RefSeq Acc Id: XM_039112944   ⟹   XP_038968872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,318,374 (-)NCBI
RefSeq Acc Id: XM_039112945   ⟹   XP_038968873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,424,769 (-)NCBI
RefSeq Acc Id: XM_039112946   ⟹   XP_038968874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,383,539 (-)NCBI
RefSeq Acc Id: XM_039112947   ⟹   XP_038968875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,383,537 (-)NCBI
RefSeq Acc Id: XM_039112948   ⟹   XP_038968876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,242,071 (-)NCBI
RefSeq Acc Id: XM_039112949   ⟹   XP_038968877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,245,827 (-)NCBI
RefSeq Acc Id: XM_039112950   ⟹   XP_038968878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,308 (-)NCBI
RefSeq Acc Id: XM_039112951   ⟹   XP_038968879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,311 (-)NCBI
RefSeq Acc Id: XM_039112952   ⟹   XP_038968880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,309 (-)NCBI
RefSeq Acc Id: XM_039112953   ⟹   XP_038968881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,424,769 (-)NCBI
RefSeq Acc Id: XM_039112954   ⟹   XP_038968882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,242,071 (-)NCBI
RefSeq Acc Id: XM_039112955   ⟹   XP_038968883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,302,168 (-)NCBI
RefSeq Acc Id: XM_039112956   ⟹   XP_038968884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,426,115 (-)NCBI
RefSeq Acc Id: XM_039112957   ⟹   XP_038968885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,383,092 (-)NCBI
RefSeq Acc Id: XM_039112958   ⟹   XP_038968886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2651,087,778 - 51,242,384 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001186974 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762833 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762836 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762837 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762838 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449847 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449848 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449849 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449850 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449851 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449852 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449853 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449854 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449857 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449859 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449860 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968863 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968864 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968865 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968866 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968867 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968868 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968869 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968870 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968871 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968872 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968873 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968874 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968875 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968876 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968877 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968878 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968879 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968880 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968881 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968882 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968883 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968884 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968885 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968886 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAJ52888 (Get FASTA)   NCBI Sequence Viewer  
  BAJ52889 (Get FASTA)   NCBI Sequence Viewer  
  BDP99454 (Get FASTA)   NCBI Sequence Viewer  
  EDM03297 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005521
  ENSRNOP00000005521.6
  ENSRNOP00000071341.2
  ENSRNOP00000082269.1
  ENSRNOP00000090853
  ENSRNOP00000090853.1
Reference Protein Sequences
RefSeq Acc Id: NP_001186974   ⟸   NM_001200045
- UniProtKB: E5RQ38 (UniProtKB/TrEMBL),   F1MA74 (UniProtKB/TrEMBL),   A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762838   ⟸   XM_008764616
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762833   ⟸   XM_008764611
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762837   ⟸   XM_008764615
- Peptide Label: isoform X28
- UniProtKB: A0A8I6AB01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762836   ⟸   XM_008764614
- Peptide Label: isoform X20
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449848   ⟸   XM_017594359
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449852   ⟸   XM_017594363
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449850   ⟸   XM_017594361
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449851   ⟸   XM_017594362
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449854   ⟸   XM_017594365
- Peptide Label: isoform X19
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449847   ⟸   XM_017594358
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449849   ⟸   XM_017594360
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449853   ⟸   XM_017594364
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449857   ⟸   XM_017594368
- Peptide Label: isoform X24
- UniProtKB: A0A8I6AB01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449859   ⟸   XM_017594370
- Peptide Label: isoform X26
- UniProtKB: A0A8I6AB01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449860   ⟸   XM_017594371
- Peptide Label: isoform X27
- UniProtKB: A0A8I6AB01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005521   ⟸   ENSRNOT00000005521
RefSeq Acc Id: ENSRNOP00000071341   ⟸   ENSRNOT00000086038
RefSeq Acc Id: XP_038968879   ⟸   XM_039112951
- Peptide Label: isoform X17
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968880   ⟸   XM_039112952
- Peptide Label: isoform X18
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968863   ⟸   XM_039112935
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968878   ⟸   XM_039112950
- Peptide Label: isoform X16
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968867   ⟸   XM_039112939
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968869   ⟸   XM_039112941
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968864   ⟸   XM_039112936
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968865   ⟸   XM_039112937
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968868   ⟸   XM_039112940
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968884   ⟸   XM_039112956
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038968866   ⟸   XM_039112938
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968881   ⟸   XM_039112953
- Peptide Label: isoform X21
- UniProtKB: A0A0G2K082 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968873   ⟸   XM_039112945
- Peptide Label: isoform X11
- UniProtKB: F1MA74 (UniProtKB/TrEMBL),   E5RQ38 (UniProtKB/TrEMBL),   A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968870   ⟸   XM_039112942
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968874   ⟸   XM_039112946
- Peptide Label: isoform X12
- UniProtKB: A0A0G2K082 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968871   ⟸   XM_039112943
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968875   ⟸   XM_039112947
- Peptide Label: isoform X13
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968885   ⟸   XM_039112957
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038968872   ⟸   XM_039112944
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZWP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968883   ⟸   XM_039112955
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038968877   ⟸   XM_039112949
- Peptide Label: isoform X15
- UniProtKB: A0A0G2K082 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968882   ⟸   XM_039112954
- Peptide Label: isoform X22
- UniProtKB: A0A0G2K082 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968876   ⟸   XM_039112948
- Peptide Label: isoform X14
- UniProtKB: A0A0G2K082 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968886   ⟸   XM_039112958
- Peptide Label: isoform X25
- UniProtKB: A0A8I6AB01 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000082269   ⟸   ENSRNOT00000095056
RefSeq Acc Id: ENSRNOP00000090853   ⟸   ENSRNOT00000098095
Protein Domains
Histone deacetylase   Histone deacetylase glutamine rich N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E5RQ38-F1-model_v2 AlphaFold E5RQ38 1-1068 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310748 AgrOrtholog
BioCyc Gene G2FUF-37818 BioCyc
Ensembl Genes ENSRNOG00000004158 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005521 ENTREZGENE
  ENSRNOT00000005521.8 UniProtKB/TrEMBL
  ENSRNOT00000086038.2 UniProtKB/TrEMBL
  ENSRNOT00000095056.1 UniProtKB/TrEMBL
  ENSRNOT00000098095 ENTREZGENE
  ENSRNOT00000098095.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.800.20 UniProtKB/TrEMBL
  6.10.250.1550 UniProtKB/TrEMBL
InterPro HDAC4/5/7/9 UniProtKB/TrEMBL
  His_deacetylse UniProtKB/TrEMBL
  His_deacetylse_dom UniProtKB/TrEMBL
  His_deacetylse_dom_sf UniProtKB/TrEMBL
  Hist_deacetylase_Gln_rich_N UniProtKB/TrEMBL
  Histone_deAcase_II_euk UniProtKB/TrEMBL
  Ureohydrolase_domain UniProtKB/TrEMBL
KEGG Report rno:687001 UniProtKB/TrEMBL
NCBI Gene 500642 ENTREZGENE
PANTHER HISTONE DEACETYLASE 9 UniProtKB/TrEMBL
  PTHR45364 UniProtKB/TrEMBL
Pfam HDAC4_Gln UniProtKB/TrEMBL
  Hist_deacetyl UniProtKB/TrEMBL
PhenoGen Hdac9 PhenoGen
PIRSF HDAC_II_euk UniProtKB/TrEMBL
PRINTS HDASUPER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004158 RatGTEx
Superfamily-SCOP SSF52768 UniProtKB/TrEMBL
UniProt A0A0G2K082 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWP6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AB01 ENTREZGENE, UniProtKB/TrEMBL
  E5RQ38 ENTREZGENE, UniProtKB/TrEMBL
  E5RQ39_RAT UniProtKB/TrEMBL
  F1MA74 ENTREZGENE
UniProt Secondary F1MA74 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Hdac9  histone deacetylase 9  LOC102552384  histone deacetylase 9-like  Data merged from RGD:7578807 737654 PROVISIONAL
2013-12-18 LOC102552384  histone deacetylase 9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-03-19 Hdac9  histone deacetylase 9  RGD1563092  similar to histone deacetylase-related protein  Data merged from RGD:1563092 737654 APPROVED
2012-07-02 RGD1563092  similar to histone deacetylase-related protein  LOC687001  similar to histone deacetylase 9 isoform 5  Data merged from RGD:1590167 1643240 APPROVED
2009-04-14 Hdac9  histone deacetylase 9  RGD1310748  similar to histone decetylase 9b   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310748  similar to histone decetylase 9b   RGD1310748_predicted  similar to histone decetylase 9b (predicted)  'predicted' is removed 2292626 APPROVED
2008-04-30 RGD1563092  similar to histone deacetylase-related protein   RGD1563092_predicted  similar to histone deacetylase-related protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC687001  similar to histone deacetylase 9 isoform 5      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1563092_predicted  similar to histone deacetylase-related protein (predicted)  LOC500642  similar to histone deacetylase-related protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500642  similar to histone deacetylase-related protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1310748_predicted  similar to histone decetylase 9b (predicted)  LOC314040_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC314040_predicted  similar to histone decetylase 9b (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL