Hdac9 (histone deacetylase 9) - Rat Genome Database

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Gene: Hdac9 (histone deacetylase 9) Rattus norvegicus
Analyze
Symbol: Hdac9
Name: histone deacetylase 9
RGD ID: 1310748
Description: Predicted to enable several functions, including enzyme binding activity; histone deacetylase activity (H4-K16 specific); and transcription corepressor activity. Involved in neuron differentiation and response to amphetamine. Located in nucleus. Biomarker of middle cerebral artery infarction. Orthologous to human HDAC9 (histone deacetylase 9); PARTICIPATES IN histone modification pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: histone deacetylase 9-like; LOC102552384; LOC314040; LOC500642; RGD1310748; RGD1563092; similar to histone deacetylase 9 isoform 5; similar to histone deacetylase-related protein; similar to histone decetylase 9b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2650,762,074 - 51,624,311 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl650,763,590 - 51,625,333 (-)Ensembl
Rnor_6.0653,487,367 - 54,358,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl653,488,883 - 54,059,119 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0663,109,688 - 63,978,416 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4653,066,308 - 53,114,402 (-)NCBIRGSC3.4rn4RGSC3.4
Celera649,930,173 - 50,491,018 (-)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3,5-diethoxycarbonyl-1,4-dihydrocollidine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
berberine  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
cisplatin  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
gemcitabine  (ISO)
genistein  (ISO)
glycidol  (EXP)
hydroquinone  (ISO)
indometacin  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (EXP)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
PD 0325901  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
pirfenidone  (ISO)
resveratrol  (ISO)
S-adenosyl-L-methioninate  (ISO)
S-adenosyl-L-methionine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
valsartan  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Upregulation of class II histone deacetylases mRNA during neural differentiation of cultured rat hippocampal progenitor cells. Ajamian F, etal., Neurosci Lett 2003 Jul 31;346(1-2):57-60.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. HDAC4/5-HMGB1 signalling mediated by NADPH oxidase activity contributes to cerebral ischaemia/reperfusion injury. He M, etal., J Cell Mol Med. 2013 Apr;17(4):531-42. doi: 10.1111/jcmm.12040. Epub 2013 Mar 11.
4. Differential effects of binge methamphetamine injections on the mRNA expression of histone deacetylases (HDACs) in the rat striatum. Omonijo O, etal., Neurotoxicology. 2014 Oct 27;45C:178-184. doi: 10.1016/j.neuro.2014.10.008.
5. Physical and functional HAT/HDAC interplay regulates protein acetylation balance. Peserico A and Simone C, J Biomed Biotechnol. 2011;2011:371832. doi: 10.1155/2011/371832. Epub 2010 Dec 5.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. YY1 protects cardiac myocytes from pathologic hypertrophy by interacting with HDAC5. Sucharov CC, etal., Mol Biol Cell. 2008 Oct;19(10):4141-53. doi: 10.1091/mbc.E07-12-1217. Epub 2008 Jul 16.
Additional References at PubMed
PMID:10655483   PMID:10748098   PMID:11022042   PMID:11390982   PMID:11535832   PMID:12242305   PMID:12590135   PMID:15367668   PMID:15567413   PMID:15632090   PMID:16260608   PMID:16280321  
PMID:17360565   PMID:17786239   PMID:19303849   PMID:19351956   PMID:20188095   PMID:20525066   PMID:21746928   PMID:26865248   PMID:28572913   PMID:28855441   PMID:33480300  


Genomics

Comparative Map Data
Hdac9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2650,762,074 - 51,624,311 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl650,763,590 - 51,625,333 (-)Ensembl
Rnor_6.0653,487,367 - 54,358,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl653,488,883 - 54,059,119 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0663,109,688 - 63,978,416 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4653,066,308 - 53,114,402 (-)NCBIRGSC3.4rn4RGSC3.4
Celera649,930,173 - 50,491,018 (-)NCBICelera
Cytogenetic Map6q16NCBI
HDAC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38718,086,825 - 19,002,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl718,086,949 - 19,002,416 (+)EnsemblGRCh38hg38GRCh38
GRCh37718,126,448 - 19,042,039 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36718,501,894 - 19,003,518 (+)NCBINCBI36hg18NCBI36
Build 34718,309,165 - 18,808,925NCBI
Celera718,515,050 - 19,016,663 (+)NCBI
Cytogenetic Map7p21.1NCBI
HuRef718,012,000 - 18,921,632 (+)NCBIHuRef
CHM1_1718,127,641 - 19,037,820 (+)NCBICHM1_1
T2T-CHM13v2.0718,216,502 - 19,132,425 (+)NCBI
CRA_TCAGchr7v2718,254,965 - 19,088,496 (+)NCBI
Hdac9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391234,097,579 - 34,967,094 (-)NCBIGRCm39mm39
GRCm39 Ensembl1234,097,579 - 34,967,094 (-)Ensembl
GRCm381234,047,580 - 34,917,095 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1234,047,580 - 34,917,095 (-)EnsemblGRCm38mm10GRCm38
MGSCv371235,056,362 - 35,213,754 (-)NCBIGRCm37mm9NCBIm37
MGSCv361234,956,744 - 35,114,121 (-)NCBImm8
Celera1235,799,634 - 35,959,002 (-)NCBICelera
Cytogenetic Map12A3NCBI
Hdac9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541021,245,562 - 21,932,023 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541021,046,312 - 21,932,029 (+)NCBIChiLan1.0ChiLan1.0
HDAC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1718,138,665 - 18,975,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl718,138,761 - 18,970,717 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0718,740,580 - 19,653,615 (+)NCBIMhudiblu_PPA_v0panPan3
HDAC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11432,469,349 - 33,310,439 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1432,588,414 - 33,304,387 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1431,927,168 - 32,838,858 (+)NCBI
ROS_Cfam_1.01432,319,281 - 33,231,263 (+)NCBI
ROS_Cfam_1.0 Ensembl1432,517,048 - 33,226,313 (+)Ensembl
UMICH_Zoey_3.11432,429,177 - 33,340,446 (+)NCBI
UNSW_CanFamBas_1.01432,129,507 - 33,041,580 (+)NCBI
UU_Cfam_GSD_1.01432,446,823 - 33,358,024 (+)NCBI
Hdac9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511876,722,917 - 77,572,050 (+)NCBI
SpeTri2.0NW_0049365464,398,003 - 5,247,649 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDAC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl987,449,359 - 88,186,965 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1987,164,400 - 88,192,803 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21278,058,419 - 278,182,393 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HDAC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12139,159,270 - 39,859,403 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604264,474,174 - 65,386,992 (+)NCBIVero_WHO_p1.0
Hdac9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473911,431,888 - 11,941,809 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473911,431,463 - 12,162,073 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D6Rat132  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2650,818,445 - 50,818,672 (+)MAPPERmRatBN7.2
Rnor_6.0653,553,892 - 53,554,118NCBIRnor6.0
Rnor_5.0663,175,341 - 63,175,567UniSTSRnor5.0
RGSC_v3.4652,753,065 - 52,753,434RGDRGSC3.4
RGSC_v3.4652,753,156 - 52,753,382UniSTSRGSC3.4
RGSC_v3.1652,756,282 - 52,756,508RGD
Celera649,985,387 - 49,985,682UniSTS
RH 3.4 Map6335.4RGD
RH 3.4 Map6335.4UniSTS
RH 2.0 Map6522.1RGD
SHRSP x BN Map639.8098RGD
Cytogenetic Map6q16UniSTS
D6Got65  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2650,818,520 - 50,818,655 (+)MAPPERmRatBN7.2
Rnor_6.0653,553,967 - 53,554,101NCBIRnor6.0
Rnor_5.0663,175,416 - 63,175,550UniSTSRnor5.0
RGSC_v3.4652,753,230 - 52,753,362RGDRGSC3.4
RGSC_v3.4652,753,231 - 52,753,365UniSTSRGSC3.4
RGSC_v3.1652,756,356 - 52,756,488RGD
RH 3.4 Map6344.8UniSTS
RH 3.4 Map6344.8RGD
RH 2.0 Map6529.6RGD
Cytogenetic Map6q16UniSTS
BF386843  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2650,953,672 - 50,953,836 (+)MAPPERmRatBN7.2
Rnor_6.0653,687,765 - 53,687,928NCBIRnor6.0
Rnor_5.0663,309,054 - 63,309,217UniSTSRnor5.0
RGSC_v3.4652,889,164 - 52,889,327UniSTSRGSC3.4
Celera650,120,625 - 50,120,788UniSTS
RH 3.4 Map6348.4UniSTS
Cytogenetic Map6q16UniSTS
ha3186  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2651,310,262 - 51,311,668 (+)MAPPERmRatBN7.2
Rnor_6.0654,044,210 - 54,045,615NCBIRnor6.0
Rnor_5.0663,664,705 - 63,666,110UniSTSRnor5.0
RGSC_v3.4653,267,319 - 53,268,724UniSTSRGSC3.4
Celera650,476,112 - 50,477,517UniSTS
Cytogenetic Map6q16UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 4 1
Low 2 43 32 16 11 16 8 10 70 31 40 11 8
Below cutoff 1 25 25 25 1 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001200045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB558551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB558552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000005521   ⟹   ENSRNOP00000005521
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl650,763,590 - 51,325,171 (-)Ensembl
Rnor_6.0 Ensembl653,488,883 - 54,059,119 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086038   ⟹   ENSRNOP00000071341
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl650,780,981 - 51,325,171 (-)Ensembl
Rnor_6.0 Ensembl653,598,866 - 54,020,406 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095056   ⟹   ENSRNOP00000082269
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl650,763,590 - 51,325,171 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098095   ⟹   ENSRNOP00000090853
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl651,087,942 - 51,625,333 (-)Ensembl
RefSeq Acc Id: NM_001200045   ⟹   NP_001186974
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,763,590 - 51,325,171 (-)NCBI
Rnor_6.0653,488,883 - 54,059,119 (-)NCBI
Rnor_5.0663,109,688 - 63,978,416 (-)NCBI
Celera649,930,173 - 50,491,018 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764611   ⟹   XP_008762833
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,242,989 (-)NCBI
Rnor_6.0653,487,367 - 53,978,851 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764614   ⟹   XP_008762836
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,308 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764615   ⟹   XP_008762837
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2651,087,778 - 51,624,291 (-)NCBI
Rnor_6.0653,821,198 - 54,358,688 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764616   ⟹   XP_008762838
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,305 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594358   ⟹   XP_017449847
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594359   ⟹   XP_017449848
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594360   ⟹   XP_017449849
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,623,740 (-)NCBI
Rnor_6.0653,487,367 - 54,358,333 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594361   ⟹   XP_017449850
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,307 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594362   ⟹   XP_017449851
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594363   ⟹   XP_017449852
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594364   ⟹   XP_017449853
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,242,989 (-)NCBI
Rnor_6.0653,487,367 - 53,978,851 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594365   ⟹   XP_017449854
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,306 (-)NCBI
Rnor_6.0653,487,367 - 54,358,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594368   ⟹   XP_017449857
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2651,087,778 - 51,624,287 (-)NCBI
Rnor_6.0653,821,198 - 54,358,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594370   ⟹   XP_017449859
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2651,087,778 - 51,624,291 (-)NCBI
Rnor_6.0653,821,198 - 54,358,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594371   ⟹   XP_017449860
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2651,087,778 - 51,624,286 (-)NCBI
Rnor_6.0653,821,198 - 54,358,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112935   ⟹   XP_038968863
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,309 (-)NCBI
RefSeq Acc Id: XM_039112936   ⟹   XP_038968864
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,426,258 (-)NCBI
RefSeq Acc Id: XM_039112937   ⟹   XP_038968865
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,426,258 (-)NCBI
RefSeq Acc Id: XM_039112938   ⟹   XP_038968866
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,424,814 (-)NCBI
RefSeq Acc Id: XM_039112939   ⟹   XP_038968867
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,307 (-)NCBI
RefSeq Acc Id: XM_039112940   ⟹   XP_038968868
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,426,257 (-)NCBI
RefSeq Acc Id: XM_039112941   ⟹   XP_038968869
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,426,258 (-)NCBI
RefSeq Acc Id: XM_039112942   ⟹   XP_038968870
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,424,769 (-)NCBI
RefSeq Acc Id: XM_039112943   ⟹   XP_038968871
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,383,537 (-)NCBI
RefSeq Acc Id: XM_039112944   ⟹   XP_038968872
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,318,374 (-)NCBI
RefSeq Acc Id: XM_039112945   ⟹   XP_038968873
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,424,769 (-)NCBI
RefSeq Acc Id: XM_039112946   ⟹   XP_038968874
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,383,539 (-)NCBI
RefSeq Acc Id: XM_039112947   ⟹   XP_038968875
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,383,537 (-)NCBI
RefSeq Acc Id: XM_039112948   ⟹   XP_038968876
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,242,071 (-)NCBI
RefSeq Acc Id: XM_039112949   ⟹   XP_038968877
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,245,827 (-)NCBI
RefSeq Acc Id: XM_039112950   ⟹   XP_038968878
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,308 (-)NCBI
RefSeq Acc Id: XM_039112951   ⟹   XP_038968879
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,311 (-)NCBI
RefSeq Acc Id: XM_039112952   ⟹   XP_038968880
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,624,309 (-)NCBI
RefSeq Acc Id: XM_039112953   ⟹   XP_038968881
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,424,769 (-)NCBI
RefSeq Acc Id: XM_039112954   ⟹   XP_038968882
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,242,071 (-)NCBI
RefSeq Acc Id: XM_039112955   ⟹   XP_038968883
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,302,168 (-)NCBI
RefSeq Acc Id: XM_039112956   ⟹   XP_038968884
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,426,115 (-)NCBI
RefSeq Acc Id: XM_039112957   ⟹   XP_038968885
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2650,762,074 - 51,383,092 (-)NCBI
RefSeq Acc Id: XM_039112958   ⟹   XP_038968886
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2651,087,778 - 51,242,384 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001186974 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762833 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762836 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762837 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762838 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449847 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449848 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449849 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449850 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449851 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449852 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449853 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449854 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449857 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449859 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449860 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968863 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968864 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968865 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968866 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968867 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968868 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968869 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968870 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968871 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968872 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968873 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968874 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968875 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968876 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968877 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968878 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968879 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968880 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968881 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968882 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968883 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968884 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968885 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968886 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAJ52888 (Get FASTA)   NCBI Sequence Viewer  
  BAJ52889 (Get FASTA)   NCBI Sequence Viewer  
  EDM03297 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001186974   ⟸   NM_001200045
- UniProtKB: E5RQ38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762838   ⟸   XM_008764616
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008762833   ⟸   XM_008764611
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_008762837   ⟸   XM_008764615
- Peptide Label: isoform X28
- Sequence:
RefSeq Acc Id: XP_008762836   ⟸   XM_008764614
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_017449848   ⟸   XM_017594359
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449852   ⟸   XM_017594363
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017449850   ⟸   XM_017594361
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017449851   ⟸   XM_017594362
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017449854   ⟸   XM_017594365
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_017449847   ⟸   XM_017594358
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449849   ⟸   XM_017594360
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449853   ⟸   XM_017594364
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017449857   ⟸   XM_017594368
- Peptide Label: isoform X24
- Sequence:
RefSeq Acc Id: XP_017449859   ⟸   XM_017594370
- Peptide Label: isoform X26
- Sequence:
RefSeq Acc Id: XP_017449860   ⟸   XM_017594371
- Peptide Label: isoform X27
- Sequence:
RefSeq Acc Id: ENSRNOP00000005521   ⟸   ENSRNOT00000005521
RefSeq Acc Id: ENSRNOP00000071341   ⟸   ENSRNOT00000086038
RefSeq Acc Id: XP_038968879   ⟸   XM_039112951
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038968880   ⟸   XM_039112952
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038968863   ⟸   XM_039112935
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968878   ⟸   XM_039112950
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038968867   ⟸   XM_039112939
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038968869   ⟸   XM_039112941
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038968864   ⟸   XM_039112936
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968865   ⟸   XM_039112937
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968868   ⟸   XM_039112940
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038968884   ⟸   XM_039112956
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038968866   ⟸   XM_039112938
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968881   ⟸   XM_039112953
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038968873   ⟸   XM_039112945
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038968870   ⟸   XM_039112942
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038968874   ⟸   XM_039112946
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038968871   ⟸   XM_039112943
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038968875   ⟸   XM_039112947
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038968885   ⟸   XM_039112957
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038968872   ⟸   XM_039112944
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038968883   ⟸   XM_039112955
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038968877   ⟸   XM_039112949
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038968882   ⟸   XM_039112954
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038968876   ⟸   XM_039112948
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038968886   ⟸   XM_039112958
- Peptide Label: isoform X25
RefSeq Acc Id: ENSRNOP00000082269   ⟸   ENSRNOT00000095056
RefSeq Acc Id: ENSRNOP00000090853   ⟸   ENSRNOT00000098095
Protein Domains
HDAC4_Gln   Hist_deacetyl

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E5RQ38-F1-model_v2 AlphaFold E5RQ38 1-1068 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310748 AgrOrtholog
BioCyc Gene G2FUF-37818 BioCyc
Ensembl Genes ENSRNOG00000004158 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000005521 ENTREZGENE
  ENSRNOP00000005521.6 UniProtKB/TrEMBL
  ENSRNOP00000071341.2 UniProtKB/TrEMBL
  ENSRNOP00000082269.1 UniProtKB/TrEMBL
  ENSRNOP00000090853 ENTREZGENE
  ENSRNOP00000090853.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005521 ENTREZGENE
  ENSRNOT00000005521.8 UniProtKB/TrEMBL
  ENSRNOT00000086038.2 UniProtKB/TrEMBL
  ENSRNOT00000095056.1 UniProtKB/TrEMBL
  ENSRNOT00000098095 ENTREZGENE
  ENSRNOT00000098095.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.800.20 UniProtKB/TrEMBL
InterPro His_deacetylse UniProtKB/TrEMBL
  His_deacetylse_dom UniProtKB/TrEMBL
  His_deacetylse_dom_sf UniProtKB/TrEMBL
  Hist_deacetylase_Gln_rich_N UniProtKB/TrEMBL
  Histone_deAcase_II_euk UniProtKB/TrEMBL
  Ureohydrolase_domain UniProtKB/TrEMBL
KEGG Report rno:687001 UniProtKB/TrEMBL
NCBI Gene 500642 ENTREZGENE
Pfam HDAC4_Gln UniProtKB/TrEMBL
  Hist_deacetyl UniProtKB/TrEMBL
PhenoGen Hdac9 PhenoGen
PIRSF HDAC_II_euk UniProtKB/TrEMBL
PRINTS HDASUPER UniProtKB/TrEMBL
Superfamily-SCOP SSF52768 UniProtKB/TrEMBL
UniProt A0A0G2K082_RAT UniProtKB/TrEMBL
  A0A8I5ZWP6_RAT UniProtKB/TrEMBL
  A0A8I6AB01_RAT UniProtKB/TrEMBL
  E5RQ38 ENTREZGENE, UniProtKB/TrEMBL
  E5RQ39_RAT UniProtKB/TrEMBL
UniProt Secondary F1MA74 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Hdac9  histone deacetylase 9  LOC102552384  histone deacetylase 9-like  Data Merged 737654 PROVISIONAL
2013-12-18 LOC102552384  histone deacetylase 9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-03-19 Hdac9  histone deacetylase 9  RGD1563092  similar to histone deacetylase-related protein  Data Merged 737654 APPROVED
2012-07-02 RGD1563092  similar to histone deacetylase-related protein  LOC687001  similar to histone deacetylase 9 isoform 5  Data Merged 1643240 APPROVED
2009-04-14 Hdac9  histone deacetylase 9  RGD1310748  similar to histone decetylase 9b   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310748  similar to histone decetylase 9b   RGD1310748_predicted  similar to histone decetylase 9b (predicted)  'predicted' is removed 2292626 APPROVED
2008-04-30 RGD1563092  similar to histone deacetylase-related protein   RGD1563092_predicted  similar to histone deacetylase-related protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC687001  similar to histone deacetylase 9 isoform 5      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1563092_predicted  similar to histone deacetylase-related protein (predicted)  LOC500642  similar to histone deacetylase-related protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500642  similar to histone deacetylase-related protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1310748_predicted  similar to histone decetylase 9b (predicted)  LOC314040_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC314040_predicted  similar to histone decetylase 9b (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL