Gpr22 (G protein-coupled receptor 22) - Rat Genome Database

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Gene: Gpr22 (G protein-coupled receptor 22) Rattus norvegicus
Analyze
Symbol: Gpr22
Name: G protein-coupled receptor 22
RGD ID: 1310848
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and cellular response to hormone stimulus. Located in plasma membrane. Orthologous to human GPR22 (G protein-coupled receptor 22); INTERACTS WITH bisphenol A; C60 fullerene; ketamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: G-protein coupled receptor 22; LOC298944; probable G-protein coupled receptor 22
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8654,037,998 - 54,044,994 (-)NCBIGRCr8
mRatBN7.2648,309,619 - 48,317,864 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,310,505 - 48,317,486 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx648,617,978 - 48,624,964 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,932,905 - 48,939,891 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0648,373,105 - 48,380,092 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0651,012,421 - 51,021,253 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl651,011,426 - 51,019,407 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,683,765 - 59,690,751 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,654,472 - 49,661,340 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1649,658,794 - 49,664,434 (-)NCBI
Celera647,513,122 - 47,520,109 (-)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
plasma membrane  (IDA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Myocardial expression, signaling, and function of GPR22: a protective role for an orphan G protein-coupled receptor. Adams JW, etal., Am J Physiol Heart Circ Physiol. 2008 Aug;295(2):H509-21. doi: 10.1152/ajpheart.00368.2008. Epub 2008 Jun 6.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:24937127   PMID:38816768  


Genomics

Comparative Map Data
Gpr22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8654,037,998 - 54,044,994 (-)NCBIGRCr8
mRatBN7.2648,309,619 - 48,317,864 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,310,505 - 48,317,486 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx648,617,978 - 48,624,964 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,932,905 - 48,939,891 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0648,373,105 - 48,380,092 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0651,012,421 - 51,021,253 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl651,011,426 - 51,019,407 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,683,765 - 59,690,751 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,654,472 - 49,661,340 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1649,658,794 - 49,664,434 (-)NCBI
Celera647,513,122 - 47,520,109 (-)NCBICelera
Cytogenetic Map6q16NCBI
GPR22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,470,057 - 107,477,845 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7107,470,018 - 107,475,684 (+)EnsemblGRCh38hg38GRCh38
GRCh377107,110,502 - 107,116,129 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367106,897,738 - 106,903,361 (+)NCBINCBI36Build 36hg18NCBI36
Build 347106,708,456 - 106,709,758NCBI
Celera7101,915,775 - 101,921,399 (+)NCBICelera
Cytogenetic Map7q22.3NCBI
HuRef7101,471,125 - 101,476,749 (+)NCBIHuRef
CHM1_17107,044,440 - 107,050,064 (+)NCBICHM1_1
T2T-CHM13v2.07108,786,096 - 108,792,223 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27106,471,589 - 106,477,213 (+)NCBI
Gpr22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,756,866 - 31,763,882 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,756,866 - 31,763,946 (-)EnsemblGRCm39 Ensembl
GRCm381231,706,867 - 31,713,883 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,706,867 - 31,713,947 (-)EnsemblGRCm38mm10GRCm38
MGSCv371232,391,732 - 32,398,791 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361232,292,114 - 32,299,126 (-)NCBIMGSCv36mm8
Celera1233,156,802 - 33,163,861 (-)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1213.69NCBI
Gpr22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541011,841,850 - 11,849,441 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541011,841,813 - 11,849,441 (+)NCBIChiLan1.0ChiLan1.0
GPR22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,312,793 - 144,330,792 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17192,582,764 - 192,600,760 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0799,448,716 - 99,457,221 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17112,172,710 - 112,178,596 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,176,800 - 112,178,101 (+)Ensemblpanpan1.1panPan2
GPR22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11813,124,646 - 13,131,441 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1813,126,050 - 13,127,351 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1812,767,612 - 12,774,827 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01813,395,100 - 13,402,315 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1813,394,815 - 13,402,207 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11813,211,989 - 13,219,203 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01813,131,913 - 13,139,129 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01813,409,432 - 13,416,648 (-)NCBIUU_Cfam_GSD_1.0
Gpr22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,494,990 - 55,502,094 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,618,680 - 16,624,489 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,620,222 - 16,625,938 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPR22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,205,411 - 107,211,078 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19107,202,301 - 107,211,340 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29117,960,272 - 117,965,933 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPR22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,390,051 - 76,397,224 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,395,039 - 76,396,340 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604227,474,580 - 27,480,756 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpr22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473922,261,383 - 22,267,872 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473922,262,177 - 22,269,220 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpr22
21 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:233
Count of miRNA genes:147
Interacting mature miRNAs:189
Transcripts:ENSRNOT00000011659
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63432335751121479Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat

Markers in Region
BF412679  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2648,315,954 - 48,316,135 (+)MAPPERmRatBN7.2
Rnor_6.0651,017,876 - 51,018,056NCBIRnor6.0
Rnor_5.0659,689,220 - 59,689,400UniSTSRnor5.0
RGSC_v3.4649,659,809 - 49,659,989UniSTSRGSC3.4
Celera647,518,578 - 47,518,758UniSTS
RH 3.4 Map6321.9UniSTS
Cytogenetic Map6q16UniSTS
RH144397  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2648,310,751 - 48,310,902 (+)MAPPERmRatBN7.2
Rnor_6.0651,012,674 - 51,012,824NCBIRnor6.0
Rnor_5.0659,684,018 - 59,684,168UniSTSRnor5.0
RGSC_v3.4649,654,725 - 49,654,876UniSTSRGSC3.4
Celera647,513,375 - 47,513,525UniSTS
RH 3.4 Map6301.8UniSTS
Cytogenetic Map6q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 8 49 106 57 56 25 25 25 5 152 93 87 17 49 31

Sequence


Ensembl Acc Id: ENSRNOT00000011659   ⟹   ENSRNOP00000011659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl648,310,505 - 48,317,486 (-)Ensembl
Rnor_6.0 Ensembl651,012,427 - 51,019,407 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082691   ⟹   ENSRNOP00000072608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl651,011,426 - 51,018,050 (-)Ensembl
RefSeq Acc Id: NM_001106722   ⟹   NP_001100192
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8654,037,998 - 54,044,985 (-)NCBI
mRatBN7.2648,310,499 - 48,317,486 (-)NCBI
Rnor_6.0651,012,421 - 51,019,407 (-)NCBI
Rnor_5.0659,683,765 - 59,690,751 (-)NCBI
RGSC_v3.4649,654,472 - 49,661,340 (-)RGD
Celera647,513,122 - 47,520,109 (-)RGD
Sequence:
RefSeq Acc Id: XM_039111962   ⟹   XP_038967890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8654,038,161 - 54,044,994 (-)NCBI
mRatBN7.2648,309,619 - 48,317,864 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001100192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967890 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D4A3U0 (Get FASTA)   NCBI Sequence Viewer  
  EDM03260 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011659.5
RefSeq Acc Id: NP_001100192   ⟸   NM_001106722
- UniProtKB: D4A3U0 (UniProtKB/TrEMBL),   A0A5H1ZRU0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072608   ⟸   ENSRNOT00000082691
Ensembl Acc Id: ENSRNOP00000011659   ⟸   ENSRNOT00000011659
RefSeq Acc Id: XP_038967890   ⟸   XM_039111962
- Peptide Label: isoform X1
- UniProtKB: D4A3U0 (UniProtKB/Swiss-Prot),   A0A5H1ZRU0 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3U0-F1-model_v2 AlphaFold D4A3U0 1-432 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694546
Promoter ID:EPDNEW_R5070
Type:single initiation site
Name:Gpr22_1
Description:G protein-coupled receptor 22
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0651,019,378 - 51,019,438EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310848 AgrOrtholog
BioCyc Gene G2FUF-37903 BioCyc
Ensembl Genes ENSRNOG00000008423 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011659.7 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:298944 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 298944 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR 22 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gpr22 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008423 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5H1ZRU0 ENTREZGENE, UniProtKB/TrEMBL
  D4A3U0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Gpr22  G protein-coupled receptor 22   Gpr22_predicted  G protein-coupled receptor 22 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Gpr22_predicted  G protein-coupled receptor 22 (predicted)      Symbol and Name status set to approved 70820 APPROVED