Snx13 (sorting nexin 13) - Rat Genome Database

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Gene: Snx13 (sorting nexin 13) Rattus norvegicus
Analyze
Symbol: Snx13
Name: sorting nexin 13
RGD ID: 1309778
Description: Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in intracellular protein transport. Predicted to be located in membrane. Predicted to be active in early endosome. Orthologous to human SNX13 (sorting nexin 13); PARTICIPATES IN epinephrine signaling pathway via adrenergic receptor beta; G protein mediated signaling pathway via Galphas family; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362731; sorting nexin-13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8657,478,139 - 57,589,624 (+)NCBIGRCr8
mRatBN7.2651,758,258 - 51,862,260 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl651,753,036 - 51,860,224 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx652,043,476 - 52,146,514 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0652,358,407 - 52,461,434 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0651,814,258 - 51,917,256 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0654,487,626 - 54,591,716 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl654,488,038 - 54,588,778 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0664,111,167 - 64,215,827 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4653,727,055 - 53,827,207 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1653,729,850 - 53,831,298 (+)NCBI
Celera650,916,785 - 51,016,544 (+)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
early endosome  (IBA,ISO)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
5. How regulators of G protein signaling achieve selective regulation. Xie GX and Palmer PP, J Mol Biol. 2007 Feb 16;366(2):349-65. Epub 2006 Nov 15.
Additional References at PubMed
PMID:11729322   PMID:25148684  


Genomics

Comparative Map Data
Snx13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8657,478,139 - 57,589,624 (+)NCBIGRCr8
mRatBN7.2651,758,258 - 51,862,260 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl651,753,036 - 51,860,224 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx652,043,476 - 52,146,514 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0652,358,407 - 52,461,434 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0651,814,258 - 51,917,256 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0654,487,626 - 54,591,716 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl654,488,038 - 54,588,778 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0664,111,167 - 64,215,827 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4653,727,055 - 53,827,207 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1653,729,850 - 53,831,298 (+)NCBI
Celera650,916,785 - 51,016,544 (+)NCBICelera
Cytogenetic Map6q16NCBI
SNX13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38717,790,761 - 17,940,494 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl717,790,761 - 17,940,501 (-)EnsemblGRCh38hg38GRCh38
GRCh37717,830,385 - 17,980,117 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36717,798,181 - 17,946,656 (-)NCBINCBI36Build 36hg18NCBI36
Build 34717,605,697 - 17,753,359NCBI
Celera717,810,453 - 17,960,145 (-)NCBICelera
Cytogenetic Map7p21.1NCBI
HuRef717,715,986 - 17,865,705 (-)NCBIHuRef
CHM1_1717,831,111 - 17,980,807 (-)NCBICHM1_1
T2T-CHM13v2.0717,920,498 - 18,070,184 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2717,883,821 - 18,033,475 (-)NCBI
Snx13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391235,097,191 - 35,197,479 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1235,097,185 - 35,197,478 (+)EnsemblGRCm39 Ensembl
GRCm381235,046,147 - 35,147,480 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1235,047,186 - 35,147,479 (+)EnsemblGRCm38mm10GRCm38
MGSCv371235,731,861 - 35,832,149 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361235,632,289 - 35,730,455 (+)NCBIMGSCv36mm8
Celera1236,470,667 - 36,572,661 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1215.67NCBI
Snx13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541020,792,659 - 20,925,907 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541020,792,659 - 20,925,907 (-)NCBIChiLan1.0ChiLan1.0
SNX13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2622,622,629 - 22,780,507 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1770,947,352 - 71,097,220 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0718,444,092 - 18,593,950 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1717,770,476 - 17,920,114 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl717,749,772 - 17,920,085 (-)Ensemblpanpan1.1panPan2
SNX13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11432,173,630 - 32,291,039 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1432,173,181 - 32,291,039 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1431,631,806 - 31,814,077 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01432,029,511 - 32,211,832 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1432,093,963 - 32,212,176 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11432,133,581 - 32,315,782 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01431,842,808 - 32,022,596 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01432,159,962 - 32,339,843 (-)NCBIUU_Cfam_GSD_1.0
Snx13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511876,452,244 - 76,594,996 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365464,127,227 - 4,270,473 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365464,127,333 - 4,270,107 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl986,964,045 - 87,086,577 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1986,964,038 - 87,087,200 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2995,996,474 - 96,120,253 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12140,205,205 - 40,356,505 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2140,248,595 - 40,353,239 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604264,161,543 - 64,317,704 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473912,468,372 - 12,589,926 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snx13
397 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:43
Count of miRNA genes:31
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000005637
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat

Markers in Region
BF386258  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2651,847,080 - 51,847,233 (+)MAPPERmRatBN7.2
Rnor_6.0654,576,166 - 54,576,318NCBIRnor6.0
Rnor_5.0664,200,277 - 64,200,429UniSTSRnor5.0
RGSC_v3.4653,814,572 - 53,814,724UniSTSRGSC3.4
Celera651,004,317 - 51,004,469UniSTS
RH 3.4 Map6352.4UniSTS
Cytogenetic Map6q16UniSTS
BI302154  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2651,857,107 - 51,857,285 (+)MAPPERmRatBN7.2
Rnor_6.0654,586,564 - 54,586,741NCBIRnor6.0
Rnor_5.0664,210,675 - 64,210,852UniSTSRnor5.0
RGSC_v3.4653,824,993 - 53,825,170UniSTSRGSC3.4
Celera651,014,330 - 51,014,507UniSTS
RH 3.4 Map6353.8UniSTS
Cytogenetic Map6q16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 48 32 19 32 8 10 74 35 41 11 8
Low 2 9 9 9 1
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000005637   ⟹   ENSRNOP00000005637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl651,759,326 - 51,859,322 (+)Ensembl
Rnor_6.0 Ensembl654,488,075 - 54,588,778 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084661   ⟹   ENSRNOP00000069103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl651,793,358 - 51,860,224 (+)Ensembl
Rnor_6.0 Ensembl654,488,038 - 54,588,751 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095510   ⟹   ENSRNOP00000089422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl651,753,036 - 51,860,224 (+)Ensembl
RefSeq Acc Id: NM_001399693   ⟹   NP_001386622
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8657,486,684 - 57,589,624 (+)NCBI
mRatBN7.2651,759,316 - 51,862,260 (+)NCBI
RefSeq Acc Id: NM_001399694   ⟹   NP_001386623
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8657,486,684 - 57,589,624 (+)NCBI
mRatBN7.2651,759,316 - 51,862,260 (+)NCBI
RefSeq Acc Id: NM_001399695   ⟹   NP_001386624
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8657,486,684 - 57,540,082 (+)NCBI
mRatBN7.2651,759,316 - 51,812,717 (+)NCBI
RefSeq Acc Id: XM_006240022   ⟹   XP_006240084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8657,478,139 - 57,589,624 (+)NCBI
mRatBN7.2651,758,258 - 51,862,260 (+)NCBI
Rnor_6.0654,487,626 - 54,591,716 (+)NCBI
Rnor_5.0664,111,167 - 64,215,827 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112495   ⟹   XP_038968423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8657,520,897 - 57,589,624 (+)NCBI
mRatBN7.2651,794,719 - 51,862,260 (+)NCBI
RefSeq Acc Id: XM_039112496   ⟹   XP_038968424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8657,520,897 - 57,589,624 (+)NCBI
mRatBN7.2651,794,719 - 51,862,260 (+)NCBI
RefSeq Acc Id: XM_039112498   ⟹   XP_038968426
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8657,539,923 - 57,589,624 (+)NCBI
mRatBN7.2651,812,727 - 51,862,260 (+)NCBI
RefSeq Acc Id: XM_063262093   ⟹   XP_063118163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8657,539,923 - 57,589,624 (+)NCBI
RefSeq Acc Id: XM_063262094   ⟹   XP_063118164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8657,520,911 - 57,589,624 (+)NCBI
RefSeq Acc Id: XM_063262095   ⟹   XP_063118165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8657,528,714 - 57,589,624 (+)NCBI
RefSeq Acc Id: XP_006240084   ⟸   XM_006240022
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GI34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069103   ⟸   ENSRNOT00000084661
RefSeq Acc Id: ENSRNOP00000005637   ⟸   ENSRNOT00000005637
RefSeq Acc Id: XP_038968424   ⟸   XM_039112496
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JUH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968423   ⟸   XM_039112495
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JUH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968426   ⟸   XM_039112498
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000089422   ⟸   ENSRNOT00000095510
RefSeq Acc Id: NP_001386623   ⟸   NM_001399694
- Peptide Label: isoform 2
- UniProtKB: A0A0G2JUH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386622   ⟸   NM_001399693
- Peptide Label: isoform 1
- UniProtKB: A0A0G2JUH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386624   ⟸   NM_001399695
- Peptide Label: isoform 3
RefSeq Acc Id: XP_063118164   ⟸   XM_063262094
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063118165   ⟸   XM_063262095
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063118163   ⟸   XM_063262093
- Peptide Label: isoform X4
Protein Domains
PX   PXA   RGS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JUH8-F1-model_v2 AlphaFold A0A0G2JUH8 1-958 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694563
Promoter ID:EPDNEW_R5080
Type:multiple initiation site
Name:Snx13_1
Description:sorting nexin 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0654,488,074 - 54,488,134EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309778 AgrOrtholog
BioCyc Gene G2FUF-37814 BioCyc
Ensembl Genes ENSRNOG00000004186 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005637.6 UniProtKB/TrEMBL
  ENSRNOT00000084661.2 UniProtKB/TrEMBL
  ENSRNOT00000095510 ENTREZGENE
  ENSRNOT00000095510.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.167.10 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro Phox UniProtKB/TrEMBL
  Phox_assoc UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  Regulat_G_prot_signal_superfam UniProtKB/TrEMBL
  RGS_sf UniProtKB/TrEMBL
  RGS_subdomain_2 UniProtKB/TrEMBL
  SNX13_PX UniProtKB/TrEMBL
  SNX13_RGS UniProtKB/TrEMBL
  Sorting_nexin_C UniProtKB/TrEMBL
KEGG Report rno:362731 UniProtKB/TrEMBL
NCBI Gene 362731 ENTREZGENE
PANTHER SORTING NEXIN UniProtKB/TrEMBL
  SORTING NEXIN-13 UniProtKB/TrEMBL
Pfam Nexin_C UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
  PXA UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
PhenoGen Snx13 PhenoGen
PROSITE PS50195 UniProtKB/TrEMBL
  PXA UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004186 RatGTEx
SMART PXA UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP 64268 UniProtKB/TrEMBL
  Regulat_G_prot_signal_superfam UniProtKB/TrEMBL
UniProt A0A0G2JUH8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GI34 ENTREZGENE, UniProtKB/TrEMBL
  D3ZCH3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Snx13  sorting nexin 13   Snx13_predicted  sorting nexin 13 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Snx13_predicted  sorting nexin 13 (predicted)      Symbol and Name status set to approved 70820 APPROVED