LOC120093495 (U4 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120093495 (U4 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120093495
Name: U4 spliceosomal RNA
RGD ID: 41344174
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U4
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8654,684,807 - 54,684,934 (-)NCBIGRCr8
mRatBN7.2648,957,291 - 48,957,480 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,957,291 - 48,957,480 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl648,957,291 - 48,957,480 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl651,659,386 - 51,659,515 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in LOC120093495
1 total Variants

1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63432335751121479Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat

1 to 10 of 25 rows





GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000085302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl648,957,291 - 48,957,480 (-)Ensembl

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-37894 BioCyc
Ensembl Genes ENSRNOG00000059105 Ensembl
NCBI Gene LOC120093495 ENTREZGENE
PhenoGen LOC120093495 PhenoGen
RatGTEx ENSRNOG00000059105 RatGTEx
RNAcentral URS0000658E2D RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120093495  U4 spliceosomal RNA  U4  U4 spliceosomal RNA  Data merged from RGD:15012303 737654 PROVISIONAL
2021-01-27 LOC120093495  U4 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U4  U4 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL