Atxn7l1 (ataxin 7-like 1) - Rat Genome Database
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Gene: Atxn7l1 (ataxin 7-like 1) Rattus norvegicus
Analyze
Symbol: Atxn7l1
Name: ataxin 7-like 1
RGD ID: 1305730
Description: Orthologous to human ATXN7L1 (ataxin 7 like 1); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: MODEL
Also known as: ataxin 7-like 4; ataxin-7-like protein 1; Atxn7l4; LOC362726; RGD1305730; RGD1564242; similar to hypothetical protein MGC33190
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2649,759,876 - 49,982,323 (+)NCBI
Rnor_6.0 Ensembl652,459,946 - 52,675,574 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0652,459,930 - 52,680,552 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0662,083,357 - 62,302,011 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.1651,491,170 - 51,596,750 (+)NCBI
Celera648,950,501 - 49,171,867 (+)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Atxn7l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2649,759,876 - 49,982,323 (+)NCBI
Rnor_6.0 Ensembl652,459,946 - 52,675,574 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0652,459,930 - 52,680,552 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0662,083,357 - 62,302,011 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.1651,491,170 - 51,596,750 (+)NCBI
Celera648,950,501 - 49,171,867 (+)NCBICelera
Cytogenetic Map6q16NCBI
ATXN7L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7105,605,067 - 105,876,604 (-)EnsemblGRCh38hg38GRCh38
GRCh387105,604,772 - 105,877,772 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh377105,245,219 - 105,517,045 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh377105,244,932 - 105,517,046 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367105,188,055 - 105,304,264 (-)NCBINCBI36hg18NCBI36
Build 347104,994,769 - 105,110,979NCBI
Celera7100,050,314 - 100,322,052 (-)NCBI
Cytogenetic Map7q22.3NCBI
HuRef799,603,460 - 99,874,805 (-)NCBIHuRef
CHM1_17105,178,559 - 105,450,676 (-)NCBICHM1_1
Atxn7l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391233,196,967 - 33,426,407 (+)NCBIGRCm39mm39
GRCm381233,146,968 - 33,376,408 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1233,147,693 - 33,373,185 (+)EnsemblGRCm38mm10GRCm38
MGSCv371233,832,551 - 34,053,142 (+)NCBIGRCm37mm9NCBIm37
MGSCv361233,887,798 - 33,953,520 (+)NCBImm8
Celera1234,597,134 - 34,812,636 (+)NCBICelera
Cytogenetic Map12A3NCBI
Atxn7l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541010,167,187 - 10,226,155 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541010,167,196 - 10,391,362 (-)NCBIChiLan1.0ChiLan1.0
ATXN7L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17110,325,150 - 110,590,054 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7110,327,942 - 110,590,021 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0797,594,803 - 97,861,463 (-)NCBIMhudiblu_PPA_v0panPan3
ATXN7L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1814,661,497 - 14,816,575 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11814,661,497 - 14,821,041 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Atxn7l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647918,049,860 - 18,287,175 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATXN7L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9105,464,468 - 105,925,601 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19105,464,614 - 105,925,637 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29116,232,446 - 116,608,014 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATXN7L1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12174,525,581 - 74,796,167 (-)NCBI
ChlSab1.1 Ensembl2174,525,184 - 74,796,133 (-)Ensembl
Atxn7l1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473923,754,290 - 23,976,754 (+)NCBI

Position Markers
D6Got66  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0652,525,192 - 52,525,387NCBIRnor6.0
Rnor_5.0662,148,594 - 62,148,789UniSTSRnor5.0
RGSC_v3.4651,560,528 - 51,560,724RGDRGSC3.4
RGSC_v3.4651,560,529 - 51,560,724UniSTSRGSC3.4
RGSC_v3.1651,563,655 - 51,563,850RGD
Celera649,016,918 - 49,017,113UniSTS
RH 3.4 Map6324.8UniSTS
RH 3.4 Map6324.8RGD
RH 2.0 Map6511.4RGD
Cytogenetic Map6q16UniSTS
BF401506  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0652,605,575 - 52,605,753NCBIRnor6.0
Rnor_5.0662,227,944 - 62,228,122UniSTSRnor5.0
RGSC_v3.4651,642,884 - 51,643,062UniSTSRGSC3.4
Celera649,097,302 - 49,097,480UniSTS
RH 3.4 Map6326.3UniSTS
Cytogenetic Map6q16UniSTS
BE113530  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0652,634,371 - 52,634,532NCBIRnor6.0
Rnor_5.0662,256,740 - 62,256,901UniSTSRnor5.0
RGSC_v3.4651,671,579 - 51,671,740UniSTSRGSC3.4
Celera649,126,124 - 49,126,285UniSTS
RH 3.4 Map6325.2UniSTS
Cytogenetic Map6q16UniSTS
BE100986  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.03120,425,154 - 120,425,301NCBIRnor6.0
Rnor_6.0652,558,183 - 52,558,333NCBIRnor6.0
Rnor_5.0662,181,585 - 62,181,735UniSTSRnor5.0
Rnor_5.03126,908,213 - 126,908,360UniSTSRnor5.0
RGSC_v3.4651,594,421 - 51,594,571UniSTSRGSC3.4
RGSC_v3.43115,376,557 - 115,376,704UniSTSRGSC3.4
Celera3113,906,291 - 113,906,438UniSTS
Celera649,049,695 - 49,049,845UniSTS
RH 3.4 Map3986.4UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map3q36UniSTS
MARC_13945-13946:1007583817:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0652,460,002 - 52,460,748NCBIRnor6.0
Rnor_5.0662,083,404 - 62,084,150UniSTSRnor5.0
RGSC_v3.4651,494,625 - 51,495,371UniSTSRGSC3.4
Celera648,950,573 - 48,951,319UniSTS
Cytogenetic Map6q16UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6175623393Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)6112039375023446Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)62537030111715717Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)6616172276002731Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6616172276002731Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)67009971115379601Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)71017386255173862Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)61312295857516539Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)61941788764417887Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62151530265784818Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63425776653855198Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63436743680490628Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63499565675623393Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63626028860606186Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63626028884763275Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63760898075023446Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63810630883106308Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63819641260606431Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64167904686679046Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)648432758108268790Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 1 1 4 1 56 1 10 3
Low 43 56 40 15 40 8 11 18 34 31 8 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006240009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_343048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC166538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000013474   ⟹   ENSRNOP00000013474
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl652,459,962 - 52,558,412 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000013842   ⟹   ENSRNOP00000013842
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl652,663,112 - 52,672,582 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000014054   ⟹   ENSRNOP00000014054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl652,631,092 - 52,675,574 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000073277   ⟹   ENSRNOP00000066241
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl652,459,946 - 52,557,466 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076183
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl652,608,416 - 52,672,653 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076777
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl652,460,058 - 52,631,300 (+)Ensembl
RefSeq Acc Id: XM_006225745   ⟹   XP_006225807
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera648,950,501 - 49,166,814 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006225749   ⟹   XP_006225811
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera649,110,502 - 49,166,814 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006225750   ⟹   XP_006225812
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera649,098,988 - 49,166,814 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006225751   ⟹   XP_006225813
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera648,950,502 - 49,166,814 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006225752   ⟹   XP_006225814
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera648,950,502 - 49,171,867 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006225753   ⟹   XP_006225815
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera649,134,347 - 49,166,814 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006225754   ⟹   XP_006225816
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera649,134,347 - 49,166,814 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006225755   ⟹   XP_006225817
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera648,950,508 - 49,049,919 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240009   ⟹   XP_006240071
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,880 - 49,974,573 (+)NCBI
Rnor_6.0652,459,930 - 52,675,499 (+)NCBI
Rnor_5.0662,083,357 - 62,302,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240013   ⟹   XP_006240075
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,917,221 - 49,974,573 (+)NCBI
Rnor_6.0652,618,775 - 52,675,499 (+)NCBI
Rnor_5.0662,083,357 - 62,302,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240014   ⟹   XP_006240076
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,910,201 - 49,974,573 (+)NCBI
Rnor_6.0652,607,261 - 52,675,499 (+)NCBI
Rnor_5.0662,083,357 - 62,302,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240015   ⟹   XP_006240077
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,882 - 49,974,573 (+)NCBI
Rnor_6.0652,459,931 - 52,675,499 (+)NCBI
Rnor_5.0662,083,357 - 62,302,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240016   ⟹   XP_006240078
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,923 - 49,982,323 (+)NCBI
Rnor_6.0652,459,931 - 52,680,552 (+)NCBI
Rnor_5.0662,083,357 - 62,302,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240017   ⟹   XP_006240079
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,944,715 - 49,974,573 (+)NCBI
Rnor_6.0652,642,594 - 52,675,499 (+)NCBI
Rnor_5.0662,083,357 - 62,302,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240018   ⟹   XP_006240080
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,944,715 - 49,974,573 (+)NCBI
Rnor_6.0652,642,594 - 52,675,499 (+)NCBI
Rnor_5.0662,083,357 - 62,302,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240019   ⟹   XP_006240081
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,885 - 49,859,656 (+)NCBI
Rnor_6.0652,459,937 - 52,558,407 (+)NCBI
Rnor_5.0662,083,357 - 62,302,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764632   ⟹   XP_008762854
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,879 - 49,982,323 (+)NCBI
Rnor_6.0652,459,930 - 52,680,552 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764633   ⟹   XP_008762855
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0652,618,775 - 52,675,499 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764634   ⟹   XP_008762856
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,923 - 49,982,323 (+)NCBI
Rnor_6.0652,459,988 - 52,680,552 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008776231   ⟹   XP_008774453
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera648,950,501 - 49,171,867 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008776232   ⟹   XP_008774454
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera649,110,502 - 49,166,814 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008776233   ⟹   XP_008774455
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera648,950,559 - 49,171,867 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039113161   ⟹   XP_038969089
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,878 - 49,974,573 (+)NCBI
RefSeq Acc Id: XM_039113162   ⟹   XP_038969090
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,878 - 49,982,323 (+)NCBI
RefSeq Acc Id: XM_039113164   ⟹   XP_038969092
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,878 - 49,982,323 (+)NCBI
RefSeq Acc Id: XM_039113165   ⟹   XP_038969093
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,876 - 49,974,573 (+)NCBI
RefSeq Acc Id: XM_039113166   ⟹   XP_038969094
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,773,882 - 49,974,573 (+)NCBI
RefSeq Acc Id: XM_039113167   ⟹   XP_038969095
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,881 - 49,974,573 (+)NCBI
RefSeq Acc Id: XM_039113168   ⟹   XP_038969096
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,917,222 - 49,974,573 (+)NCBI
RefSeq Acc Id: XM_039113169   ⟹   XP_038969097
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,950,049 - 49,974,573 (+)NCBI
RefSeq Acc Id: XR_005505854
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,879 - 49,982,323 (+)NCBI
RefSeq Acc Id: XR_005505855
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2649,759,879 - 49,982,323 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_006225817   ⟸   XM_006225755
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006225807   ⟸   XM_006225745
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006225814   ⟸   XM_006225752
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006225813   ⟸   XM_006225751
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006225812   ⟸   XM_006225750
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006225811   ⟸   XM_006225749
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006225815   ⟸   XM_006225753
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006225816   ⟸   XM_006225754
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006240081   ⟸   XM_006240019
- Peptide Label: isoform X15
- UniProtKB: D3ZTM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240071   ⟸   XM_006240009
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006240078   ⟸   XM_006240016
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006240077   ⟸   XM_006240015
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006240076   ⟸   XM_006240014
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006240075   ⟸   XM_006240013
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006240079   ⟸   XM_006240017
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_006240080   ⟸   XM_006240018
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_008774453   ⟸   XM_008776231
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008774455   ⟸   XM_008776233
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008774454   ⟸   XM_008776232
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008762854   ⟸   XM_008764632
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008762856   ⟸   XM_008764634
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_008762855   ⟸   XM_008764633
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000066241   ⟸   ENSRNOT00000073277
RefSeq Acc Id: ENSRNOP00000014054   ⟸   ENSRNOT00000014054
RefSeq Acc Id: ENSRNOP00000013474   ⟸   ENSRNOT00000013474
RefSeq Acc Id: ENSRNOP00000013842   ⟸   ENSRNOT00000013842
RefSeq Acc Id: XP_038969093   ⟸   XM_039113165
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038969090   ⟸   XM_039113162
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038969092   ⟸   XM_039113164
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038969089   ⟸   XM_039113161
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038969095   ⟸   XM_039113167
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038969094   ⟸   XM_039113166
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038969096   ⟸   XM_039113168
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038969097   ⟸   XM_039113169
- Peptide Label: isoform X14
Protein Domains
SCA7

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694558
Promoter ID:EPDNEW_R5075
Type:initiation region
Name:Atxn7l1_1
Description:ataxin 7-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0652,460,055 - 52,460,115EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
6 62290605 62290606 C A snv IS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU)
6 62293649 62293650 T C snv SR/JrHsd (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305730 AgrOrtholog
Ensembl Genes ENSRNOG00000010415 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013474 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000013842 UniProtKB/TrEMBL
  ENSRNOP00000014054 UniProtKB/TrEMBL
  ENSRNOP00000066241 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013474 UniProtKB/TrEMBL
  ENSRNOT00000013842 UniProtKB/TrEMBL
  ENSRNOT00000014054 UniProtKB/TrEMBL
  ENSRNOT00000073277 UniProtKB/TrEMBL
InterPro SCA7_dom UniProtKB/TrEMBL
NCBI Gene 362726 ENTREZGENE
Pfam SCA7 UniProtKB/TrEMBL
PhenoGen Atxn7l1 PhenoGen
PROSITE SCA7 UniProtKB/TrEMBL
UniProt D3ZHW8_RAT UniProtKB/TrEMBL
  D3ZTM4 ENTREZGENE, UniProtKB/TrEMBL
  F1M9V0_RAT UniProtKB/TrEMBL
  M0R9R2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-09-29 Atxn7l1  ataxin 7-like 1  Atxn7l4  ataxin 7-like 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Atxn7l4  ataxin 7-like 4   Atxn7l4_predicted  ataxin 7-like 4 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Atxn7l4_predicted  ataxin 7-like 4 (predicted)  RGD1305730_predicted  similar to hypothetical protein MGC33190 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1305730_predicted  similar to hypothetical protein MGC33190 (predicted)  LOC362726_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362726_predicted  similar to hypothetical protein MGC33190 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL