Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Cog5 (component of oligomeric golgi complex 5) Rattus norvegicus
Analyze
Symbol: Cog5
Name: component of oligomeric golgi complex 5
Description: Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to localize to the Golgi transport complex and nucleoplasm. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIi. Orthologous to human COG5 (component of oligomeric golgi complex 5); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: conserved oligomeric Golgi complex subunit 5; LOC314030; RGD1563296; similar to component of oligomeric golgi complex 5 isoform 1
Orthologs:
Homo sapiens (human) : COG5 (component of oligomeric golgi complex 5)  HGNC  Alliance
Mus musculus (house mouse) : Cog5 (component of oligomeric golgi complex 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cog5 (component of oligomeric golgi complex 5)
Pan paniscus (bonobo/pygmy chimpanzee) : COG5 (component of oligomeric golgi complex 5)
Canis lupus familiaris (dog) : COG5 (component of oligomeric golgi complex 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cog5 (component of oligomeric golgi complex 5)
Sus scrofa (pig) : COG5 (component of oligomeric golgi complex 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0650,953,868 - 51,230,860 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,954,631 - 51,230,701 (+)Ensembl
Rnor_5.0659,720,284 - 59,901,509 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,523,386 - 50,200,662 (+)NCBIRGSC3.4rn4RGSC3.4
Celera647,444,615 - 47,730,860 (+)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Cog5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1563296
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.