Cbll1 (Cbl proto-oncogene like 1) - Rat Genome Database

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Gene: Cbll1 (Cbl proto-oncogene like 1) Rattus norvegicus
Analyze
Symbol: Cbll1
Name: Cbl proto-oncogene like 1
RGD ID: 1310703
Description: Predicted to enable identical protein binding activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including cell-cell adhesion; mRNA methylation; and protein ubiquitination. Predicted to act upstream of or within negative regulation of cell adhesion; positive regulation of cell migration; and positive regulation of endocytosis. Predicted to be located in cytoplasm and nuclear speck. Predicted to be part of RNA N6-methyladenosine methyltransferase complex. Orthologous to human CBLL1 (Cbl proto-oncogene like 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1; Casitas B-lineage lymphoma-like 1; Cbl proto-oncogene, E3 ubiquitin protein ligase-like 1; Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase; E3 ubiquitin-protein ligase Hakai; LOC314028
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2648,071,190 - 48,086,174 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,071,190 - 48,086,444 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0650,772,718 - 50,786,861 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,772,829 - 50,786,967 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,443,728 - 59,457,594 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,352,961 - 49,366,947 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1649,358,190 - 49,377,622 (-)NCBI
Celera647,273,551 - 47,287,651 (-)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11836526   PMID:22252131   PMID:29507755   PMID:29547716  


Genomics

Comparative Map Data
Cbll1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2648,071,190 - 48,086,174 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,071,190 - 48,086,444 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0650,772,718 - 50,786,861 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,772,829 - 50,786,967 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,443,728 - 59,457,594 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,352,961 - 49,366,947 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1649,358,190 - 49,377,622 (-)NCBI
Celera647,273,551 - 47,287,651 (-)NCBICelera
Cytogenetic Map6q16NCBI
CBLL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,744,142 - 107,761,667 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl7107,743,073 - 107,761,667 (+)EnsemblGRCh38hg38GRCh38
GRCh377107,384,587 - 107,402,112 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367107,171,822 - 107,187,265 (+)NCBINCBI36Build 36hg18NCBI36
Build 347106,978,536 - 106,993,975NCBI
Celera7102,191,387 - 102,209,180 (+)NCBICelera
Cytogenetic Map7q22.3NCBI
HuRef7101,746,862 - 101,764,652 (+)NCBIHuRef
CHM1_17107,318,249 - 107,336,045 (+)NCBICHM1_1
T2T-CHM13v2.07109,062,577 - 109,080,102 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27106,745,399 - 106,763,197 (+)NCBI
Cbll1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,534,828 - 31,550,675 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,534,828 - 31,549,615 (-)EnsemblGRCm39 Ensembl
GRCm381231,484,829 - 31,500,676 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,484,829 - 31,499,616 (-)EnsemblGRCm38mm10GRCm38
MGSCv371232,171,761 - 32,184,405 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361232,072,860 - 32,085,504 (-)NCBIMGSCv36mm8
Celera1232,936,161 - 32,949,271 (-)NCBICelera
Cytogenetic Map12A2NCBI
Cbll1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541012,078,452 - 12,093,641 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541012,078,448 - 12,093,641 (+)NCBIChiLan1.0ChiLan1.0
CBLL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17112,448,099 - 112,466,261 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,448,102 - 112,467,062 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0799,725,818 - 99,743,915 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CBLL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,848,149 - 12,869,933 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,851,360 - 12,868,850 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1812,493,139 - 12,513,943 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01813,119,598 - 13,141,065 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1813,119,198 - 13,140,769 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11812,936,552 - 12,958,026 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01812,856,810 - 12,877,401 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01813,085,816 - 13,106,894 (-)NCBIUU_Cfam_GSD_1.0
Cbll1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,258,511 - 55,278,276 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647916,382,280 - 16,401,997 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBLL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,456,603 - 107,474,611 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19107,456,261 - 107,474,615 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29118,217,611 - 118,233,730 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CBLL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,659,559 - 76,678,301 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,661,324 - 76,679,418 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604227,185,139 - 27,204,277 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cbll1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473922,013,236 - 22,028,622 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473922,013,301 - 22,028,515 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
STS-N34389  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2648,071,329 - 48,071,450 (+)MAPPERmRatBN7.2
Rnor_6.0650,772,858 - 50,772,978NCBIRnor6.0
Rnor_5.0659,443,868 - 59,443,988UniSTSRnor5.0
RGSC_v3.4649,353,101 - 49,353,221UniSTSRGSC3.4
Celera647,273,691 - 47,273,811UniSTS
Cytogenetic Map6q16UniSTS
RH142339  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2648,071,401 - 48,071,598 (+)MAPPERmRatBN7.2
Rnor_6.0650,772,930 - 50,773,126NCBIRnor6.0
Rnor_5.0659,443,940 - 59,444,136UniSTSRnor5.0
RGSC_v3.4649,353,173 - 49,353,369UniSTSRGSC3.4
Celera647,273,763 - 47,273,959UniSTS
RH 3.4 Map6293.7UniSTS
Cytogenetic Map6q16UniSTS
AI467391  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2648,073,485 - 48,073,624 (+)MAPPERmRatBN7.2
Rnor_6.0650,775,014 - 50,775,152NCBIRnor6.0
Rnor_5.0659,446,024 - 59,446,162UniSTSRnor5.0
RGSC_v3.4649,355,257 - 49,355,395UniSTSRGSC3.4
Celera647,275,847 - 47,275,985UniSTS
Cytogenetic Map6q16UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:234
Count of miRNA genes:165
Interacting mature miRNAs:185
Transcripts:ENSRNOT00000009566
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 24 23 16 18 16 74 21 41 11
Low 19 34 25 1 25 8 11 14 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC107190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000009566   ⟹   ENSRNOP00000009565
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl648,071,190 - 48,086,444 (-)Ensembl
Rnor_6.0 Ensembl650,772,829 - 50,786,967 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102801   ⟹   ENSRNOP00000094608
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl648,071,190 - 48,085,435 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112474   ⟹   ENSRNOP00000084161
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl648,073,686 - 48,085,571 (-)Ensembl
RefSeq Acc Id: NM_001108018   ⟹   NP_001101488
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2648,071,190 - 48,085,323 (-)NCBI
Rnor_6.0650,772,718 - 50,786,851 (-)NCBI
Rnor_5.0659,443,728 - 59,457,594 (-)NCBI
RGSC_v3.4649,352,961 - 49,366,947 (-)RGD
Celera647,273,551 - 47,287,651 (-)RGD
Sequence:
RefSeq Acc Id: XM_006239986   ⟹   XP_006240048
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2648,071,298 - 48,085,387 (-)NCBI
Rnor_6.0650,773,197 - 50,786,861 (-)NCBI
Rnor_5.0659,443,728 - 59,457,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239987   ⟹   XP_006240049
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2648,071,298 - 48,085,387 (-)NCBI
Rnor_6.0650,773,197 - 50,786,861 (-)NCBI
Rnor_5.0659,443,728 - 59,457,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239988   ⟹   XP_006240050
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2648,071,298 - 48,085,387 (-)NCBI
Rnor_6.0650,773,197 - 50,786,861 (-)NCBI
Rnor_5.0659,443,728 - 59,457,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112212   ⟹   XP_038968140
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2648,071,298 - 48,084,218 (-)NCBI
RefSeq Acc Id: XM_039112213   ⟹   XP_038968141
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2648,071,298 - 48,084,220 (-)NCBI
RefSeq Acc Id: XM_039112214   ⟹   XP_038968142
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2648,071,298 - 48,084,219 (-)NCBI
RefSeq Acc Id: XM_039112216   ⟹   XP_038968144
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2648,071,298 - 48,084,220 (-)NCBI
RefSeq Acc Id: XM_039112217   ⟹   XP_038968145
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2648,071,298 - 48,086,174 (-)NCBI
RefSeq Acc Id: XM_039112218   ⟹   XP_038968146
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2648,071,298 - 48,085,186 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001101488   ⟸   NM_001108018
- Sequence:
RefSeq Acc Id: XP_006240050   ⟸   XM_006239988
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006240049   ⟸   XM_006239987
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006240048   ⟸   XM_006239986
- Peptide Label: isoform X6
- UniProtKB: D3ZS02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000009565   ⟸   ENSRNOT00000009566
RefSeq Acc Id: XP_038968145   ⟸   XM_039112217
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038968146   ⟸   XM_039112218
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038968144   ⟸   XM_039112216
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038968141   ⟸   XM_039112213
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968142   ⟸   XM_039112214
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968140   ⟸   XM_039112212
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000094608   ⟸   ENSRNOT00000102801
RefSeq Acc Id: ENSRNOP00000084161   ⟸   ENSRNOT00000112474
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZS02-F1-model_v2 AlphaFold D3ZS02 1-491 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694544
Promoter ID:EPDNEW_R5068
Type:single initiation site
Name:Cbll1_1
Description:Cbl proto-oncogene like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0650,786,788 - 50,786,848EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310703 AgrOrtholog
BioCyc Gene G2FUF-37919 BioCyc
Ensembl Genes ENSRNOG00000007253 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000009565 ENTREZGENE
  ENSRNOP00000009565.4 UniProtKB/TrEMBL
  ENSRNOP00000084161.1 UniProtKB/TrEMBL
  ENSRNOP00000094608 ENTREZGENE
  ENSRNOP00000094608.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009566 ENTREZGENE
  ENSRNOT00000009566.5 UniProtKB/TrEMBL
  ENSRNOT00000102801 ENTREZGENE
  ENSRNOT00000102801.1 UniProtKB/TrEMBL
  ENSRNOT00000112474.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro HAKAI-like_RING-HC UniProtKB/TrEMBL
  HAKAI/CBLL2 UniProtKB/TrEMBL
  Znf_Hakai UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene 314028 ENTREZGENE
PANTHER PTHR13480 UniProtKB/TrEMBL
Pfam zf_Hakai UniProtKB/TrEMBL
PhenoGen Cbll1 PhenoGen
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
UniProt A0A8I6A0P9_RAT UniProtKB/TrEMBL
  A0A8I6AJZ8_RAT UniProtKB/TrEMBL
  D3ZS02 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-05 Cbll1  Cbl proto-oncogene like 1  Cbll1  Casitas B-lineage lymphoma-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-05-04 Cbll1  Casitas B-lineage lymphoma-like 1  Cbll1  Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-07-18 Cbll1  Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase  Cbll1  Cbl proto-oncogene, E3 ubiquitin protein ligase-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-13 Cbll1  Cbl proto-oncogene, E3 ubiquitin protein ligase-like 1  Cbll1  Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Cbll1  Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1  Cbll1  Casitas B-lineage lymphoma-like 1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cbll1  Casitas B-lineage lymphoma-like 1   Cbll1_predicted  Casitas B-lineage lymphoma-like 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cbll1_predicted  Casitas B-lineage lymphoma-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED