Nubpl (nucleotide binding protein-like)

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Gene: Nubpl (nucleotide binding protein-like) Rattus norvegicus

Analyze

Symbol:

Nubpl

Name:

nucleotide binding protein-like

RGD ID:

1307232

Description:

Predicted to have 4 iron, 4 sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly; mitochondrial respiratory chain complex I assembly; and mitochondrion morphogenesis. Predicted to localize to mitochondrion and plasma membrane. Human ortholog(s) of this gene implicated in mitochondrial complex I deficiency. Orthologous to human NUBPL (nucleotide binding protein like); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

iron-sulfur protein NUBPL; LOC299008; nucleotide-binding protein-like; RGD1307232; similar to hypothetical protein FLJ12660

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NUBPL (nucleotide binding protein like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Nubpl (nucleotide binding protein-like)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Nubpl (nucleotide binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NUBPL (nucleotide binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NUBPL (nucleotide binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nubpl (nucleotide binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NUBPL (nucleotide binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nubpl (nucleotide binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NUBPL (nucleotide binding protein like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Nubpl (nucleotide binding protein-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	nubpl (nucleotide binding protein-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG3262	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	69,559,278 - 69,781,254 (+)	NCBI
Rnor_6.0 Ensembl	6	72,891,725 - 73,148,536 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	72,891,758 - 73,147,837 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	82,453,631 - 82,517,904 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	6	82,557,115 - 82,709,215 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	72,264,459 - 72,306,567 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	72,267,584 - 72,479,338 (+)	NCBI
Celera	6	68,435,325 - 68,646,422 (+)	NCBI		Celera
Cytogenetic Map	6	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

late onset Parkinson's disease (ISO)

mitochondrial complex I deficiency (ISO)

mitochondrial metabolism disease (ISO)

nuclear type mitochondrial complex I deficiency 1 (ISO)

nuclear type mitochondrial complex I deficiency 21 (ISO)

Parkinson's disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,1-dichloroethene (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one (EXP)

7,12-dimethyltetraphene (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium dichloride (ISO)

cisplatin (EXP,ISO)

cobalt dichloride (EXP,ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

endosulfan (EXP)

flutamide (EXP)

glafenine (EXP)

glyphosate (EXP)

hydrogen peroxide (ISO)

methylmercury chloride (ISO)

nitrofen (EXP)

O-methyleugenol (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (EXP)

quercetin (ISO)

silicon dioxide (ISO)

sodium dichromate (EXP)

sodium fluoride (ISO)

tetrachloromethane (EXP,ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

iron-sulfur cluster assembly (IBA)

mitochondrial respiratory chain complex I assembly (IBA,ISO)

mitochondrion morphogenesis (ISO)

Cellular Component

mitochondrion (IBA,ISO)

plasma membrane (IEA,ISO)

Molecular Function

4 iron, 4 sulfur cluster binding (IBA,ISO)

ATP binding (IEA)

ATPase activity (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mitochondrial iron-sulfur cluster protein biogenesis pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Maio N and Rouault TA, Biochim Biophys Acta. 2015 Jun;1853(6):1493-512. doi: 10.1016/j.bbamcr.2014.09.009. Epub 2014 Sep 19.
3.	MGD data from the GO Consortium
4.	OMIM Disease Annotation Pipeline
5.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:18614015	PMID:19752196

Genomics

Comparative Map Data

Nubpl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	69,559,278 - 69,781,254 (+)	NCBI
Rnor_6.0 Ensembl	6	72,891,725 - 73,148,536 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	72,891,758 - 73,147,837 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	82,453,631 - 82,517,904 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	6	82,557,115 - 82,709,215 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	72,264,459 - 72,306,567 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	72,267,584 - 72,479,338 (+)	NCBI
Celera	6	68,435,325 - 68,646,422 (+)	NCBI		Celera
Cytogenetic Map	6	q23	NCBI

NUBPL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	14	31,489,956 - 31,861,224 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	14	31,561,399 - 31,861,293 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	14	32,030,610 - 32,330,430 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	14	32,030,591 - 32,330,430 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	31,100,342 - 31,400,181 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	14	31,100,428 - 31,399,259	NCBI
Celera	14	11,895,904 - 12,195,785 (+)	NCBI
Cytogenetic Map	14	q12	NCBI
HuRef	14	12,147,896 - 12,447,827 (+)	NCBI		HuRef
CHM1_1	14	32,029,883 - 32,329,829 (+)	NCBI		CHM1_1

Nubpl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	52,144,529 - 52,357,753 (+)	NCBI	GRCm39		mm39
GRCm38	12	52,097,746 - 52,310,970 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	52,097,737 - 52,312,744 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	53,198,733 - 53,411,946 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	12	53,019,357 - 53,234,357 (+)	NCBI			mm8
Celera	12	53,404,089 - 53,607,597 (+)	NCBI		Celera
Cytogenetic Map	12	C1	NCBI

Nubpl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	28,872,189 - 29,073,206 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	28,873,609 - 29,073,196 (-)	NCBI	ChiLan1.0	ChiLan1.0

NUBPL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	14	30,534,997 - 30,822,227 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	14	12,338,341 - 12,628,346 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

NUBPL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	8	10,796,459 - 11,090,920 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	8	10,796,462 - 11,026,804 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Nubpl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936494	6,141,444 - 6,365,537 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NUBPL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	67,784,639 - 68,028,552 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	67,785,652 - 68,028,561 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	72,498,664 - 72,573,328 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Nubpl
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624820	562,180 - 767,434 (-)	NCBI

Position Markers

D6Rat199

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	73,141,444 - 73,141,654	NCBI	Rnor6.0
Rnor_5.0	6	82,702,823 - 82,703,033	UniSTS	Rnor5.0
RGSC_v3.4	6	72,469,819 - 72,470,030	RGD	RGSC3.4
RGSC_v3.4	6	72,469,820 - 72,470,030	UniSTS	RGSC3.4
RGSC_v3.1	6	72,472,945 - 72,473,156	RGD
Celera	6	68,640,034 - 68,640,248	UniSTS
SHRSP x BN Map	6	44.5799	UniSTS
SHRSP x BN Map	6	44.5799	RGD
Cytogenetic Map	6	q23	UniSTS

MARC_7649-7650:996688053:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	72,933,904 - 72,934,134	NCBI	Rnor6.0
Rnor_6.0	7	143,717,527 - 143,718,257	NCBI	Rnor6.0
Rnor_5.0	7	141,514,111 - 141,514,841	UniSTS	Rnor5.0
Rnor_5.0	6	82,494,665 - 82,494,895	UniSTS	Rnor5.0
RGSC_v3.4	7	140,852,606 - 140,853,336	UniSTS	RGSC3.4
RGSC_v3.4	6	72,305,758 - 72,305,988	UniSTS	RGSC3.4
Celera	7	129,679,761 - 129,680,491	UniSTS
Celera	6	68,476,527 - 68,476,757	UniSTS
Cytogenetic Map	7	q36	UniSTS
Cytogenetic Map	6	q23	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	75623393	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	1120393	75023446	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	2537030	111715717	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	6161722	76002731	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	6161722	76002731	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	7009971	115379601	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	22042854	84763421	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	22042854	84763421	Rat
1300143	Rf14	Renal function QTL 14	2.92		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	34367436	80490628	Rat
1331779	Rf38	Renal function QTL 38	2.876		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	34995656	75623393	Rat
6893340	Cm77	Cardiac mass QTL 77	0.26	0.57	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	36260288	84763275	Rat
1354632	Scl29	Serum cholesterol level QTL 29	3.74		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	6	37608980	75023446	Rat
634307	Bp141	Blood pressure QTL 141	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	38106308	83106308	Rat
9590290	Uminl2	Urine mineral level QTL 2	3.96	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	6	41679046	86679046	Rat
9590306	Scort18	Serum corticosterone level QTL 18	2.88	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	41679046	86679046	Rat
9590140	Scort4	Serum corticosterone level QTL 4	14.49	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	41679046	86679046	Rat
634330	Pia16	Pristane induced arthritis QTL 16	3.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	6	48432758	108268790	Rat
4889848	Pur25	Proteinuria QTL 25	14	0.003	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	59803065	94001333	Rat
1558641	Cm47	Cardiac mass QTL 47	2.9	0.001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	6	60606431	108154445	Rat
6893332	Cm74	Cardiac mass QTL 74	0.4	0.64	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	60606431	108154445	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	62263348	107263348	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	66129520	111129520	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	66222612	75023308	Rat
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	68781170	147991367	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	68781170	147991367	Rat
1641904	Alcrsp4	Alcohol response QTL 4			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	6	71206251	116206251	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	26
Count of miRNA genes:	25
Interacting mature miRNAs:	25
Transcripts:	ENSRNOT00000038074
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		2	14	6		6			12	24	31
Low	3	41	43	35	19	35	8	11	62	11	10	11	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001185025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BF282469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP486352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO399813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000038074 ⟹ ENSRNOP00000029049

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	72,891,725 - 73,148,536 (+)	Ensembl

RefSeq Acc Id:

NM_001185025 ⟹ NP_001171954

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	69,559,320 - 69,781,253 (+)	NCBI
Rnor_6.0	6	72,891,758 - 73,147,836 (+)	NCBI
Rnor_5.0	6	82,453,631 - 82,517,904 (+)	NCBI
Rnor_5.0	6	82,557,115 - 82,709,215 (+)	NCBI
Celera	6	68,435,325 - 68,646,422 (+)	NCBI

Sequence:

show sequence

GCTTTGAGCCATGGGGACCTGGCGGCGTTTGCTGCTCTTTGGCGGGGTGTCACTCCGGGGTGGT
GGCGTGGCCGCTGCCCTGCCCCTGGGGTGCCGAGCTTTGGGTTGTGGGCGTCAGTTATTAGGTG
CTGAGGGTGAGGCCTTGAAACAAAGAAGAACCCAAATCATGTCCCGAGGACTTCCTAAGCAGAA
GCCTATAGAGGGTGTTAGAGAAGTTATTGTTGTGGCCTCTGGAAAGGGTGGTGTTGGAAAGTCT
ACCACGGCAGTGAACCTTGCTCTCGCCCTGGCTGCGAATGATTCGTCTAAGGCGGTCGGCTTGT
TGGATGTGGATGTGTATGGGCCTTCCATTCCAAAGATGATGAACCTGAAAGGAAATCCGGAGTT
ATCACCAAATAACCTAATGAGGCCTCTTTTGAATTATGGTATTGCTTGTATGTCGATGGGCTTT
TTGGTTGAAGAGACTGCACCACTTGTTTGGAGAGGCCTTATGGTAATGTCAGCCATTGAGAAGC
TACTGAGACAGGTTGATTGGGGTCAACTGGACTATTTAGTTGTTGACATGCCACCAGGAACAGG
AGACGTGCAGTTATCAGTTTCACAGAATATCCCCATTTCAGGTGCTGTGATTGTCTCCACGCCT
CAGGACATTGCACTGATGGATGCACACAAGGGTGCGGAGATGTTTCGGAAAGTCAATGTGCCTG
TTCTTGGCCTTGTCCAAAACATGAGTGTCTTCCAGTGTCCACAGTGTAAACACAAAACTCATAT
TTTTGGTGCTGATGGTGCAAGAAAACTAGCACAGACCCTTGATCTTGATGTTTTAGGAGATGTC
CCCTTACACCTCAGTATAAGGGAAGCTTCAGATATGGGTCAGCCAGTTGTCTTTTCTCAGCCTG
AAAGTGATGAGGCCAAAGCTTACCTGAATATTGCTTCAGAAGTGGTAAGAAGATTGAAGTCACC
TCCAGAATGATTCCCAAGTGCCCTGGAACGTGTCCTGGTATTTGATAATCATGAACTGTCAAAA
ATGAGCATTGTGGTAGGGTGAGACCCACCAAAATAATGGCAATTCTGATTATTTTCATTCATCT
CTAAAGAAATAATGTCTCGTTTTCAGATTTGATTTGATGATCTATGACATAAATAAAATGTTCG
TGTGT

hide sequence

RefSeq Acc Id:

XM_008764655 ⟹ XP_008762877

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	69,559,278 - 69,781,254 (+)	NCBI
Rnor_6.0	6	72,891,795 - 73,147,837 (+)	NCBI

Sequence:

show sequence

TTTGGCGGGGTGTCACTCCGGGGTGGTGGCGTGGCCGCTGCCCTGCCCCTGGGGTGCCGAGCTT
TGGGTTGTGGGCGTCAGGTGCTGAGGGTGAGGCCTTGAAACAAAGAAGAACCCAAATCATGTCC
CGAGGACTTCCTAAGCAGAAGCCTATAGAGGGTGTTAGAGAAGTTATTGTTGTGGCCTCTGGAA
AGGGTGGTGTTGGAAAGTCTACCACGGCAGTGAACCTTGCTCTCGCCCTGGCTGCGAATGATTC
GTCTAAGGCGGTCGGCTTGTTGGATGTGGATGTGTATGGGCCTTCCATTCCAAAGATGATGAAC
CTGAAAGGAAATCCGGAGTTATCACCAAATAACCTAATGAGGCCTCTTTTGAATTATGGTATTG
CTTGTATGTCGATGGGCTTTTTGGTTGAAGAGACTGCACCACTTGTTTGGAGAGGCCTTATGGT
AATGTCAGCCATTGAGAAGCTACTGAGACAGGTTGATTGGGGTCAACTGGACTATTTAGTTGTT
GACATGCCACCAGGAACAGGAGACGTGCAGTTATCAGTTTCACAGAATATCCCCATTTCAGGTG
CTGTGATTGTCTCCACGCCTCAGGACATTGCACTGATGGATGCACACAAGGGTGCGGAGATGTT
TCGGAAAGTCAATGTGCCTGTTCTTGGCCTTGTCCAAAACATGAGTGTCTTCCAGTGTCCACAG
TGTAAACACAAAACTCATATTTTTGGTGCTGATGGTGCAAGAAAACTAGCACAGACCCTTGATC
TTGATGTTCTAGGAGATGTCCCCTTACACCTCAGTATAAGGGAAGCTTCAGATATGGGTCAGCC
AGTTGTCTTTTCTCAGCCTGAAAGTGATGAGGCCAAAGCTTACCTGAATATTGCTTCAGAAGTG
GTAAGAAGATTGAAGTCACCTCCAGAATGATTCCCAAGTGCCCTGGAACGTGTCCTGGTATTTG
ATAATCATGAACTGTCAAAAATGAGCATTGTGGTAGGGTGAGACCCACCAAAATAATGGCAATT
CTGATTATTTTCATTCATCTCTAAAGAAATAATGTCTCGTTTTCAGATTTGATTTGATGATCTA
TGACATAAATAAAATGTTCGTGTGTA

hide sequence

RefSeq Acc Id:

XM_039111969 ⟹ XP_038967897

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	69,559,278 - 69,767,706 (+)	NCBI

RefSeq Acc Id:

XM_039111970 ⟹ XP_038967898

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	69,559,278 - 69,645,716 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001171954	(Get FASTA)	NCBI Sequence Viewer
	XP_008762877	(Get FASTA)	NCBI Sequence Viewer
	XP_038967897	(Get FASTA)	NCBI Sequence Viewer
	XP_038967898	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM03388	(Get FASTA)	NCBI Sequence Viewer
	EDM03389	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001171954 ⟸ NM_001185025
- Peptide Label:	precursor
- UniProtKB:	D3ZFQ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGTWRRLLLFGGVSLRGGGVAAALPLGCRALGCGRQLLGAEGEALKQRRTQIMSRGLPKQKPIE GVREVIVVASGKGGVGKSTTAVNLALALAANDSSKAVGLLDVDVYGPSIPKMMNLKGNPELSPN NLMRPLLNYGIACMSMGFLVEETAPLVWRGLMVMSAIEKLLRQVDWGQLDYLVVDMPPGTGDVQ LSVSQNIPISGAVIVSTPQDIALMDAHKGAEMFRKVNVPVLGLVQNMSVFQCPQCKHKTHIFGA DGARKLAQTLDLDVLGDVPLHLSIREASDMGQPVVFSQPESDEAKAYLNIASEVVRRLKSPPE hide sequence

RefSeq Acc Id:

XP_008762877 ⟸ XM_008764655

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSRGLPKQKPIEGVREVIVVASGKGGVGKSTTAVNLALALAANDSSKAVGLLDVDVYGPSIPKM
MNLKGNPELSPNNLMRPLLNYGIACMSMGFLVEETAPLVWRGLMVMSAIEKLLRQVDWGQLDYL
VVDMPPGTGDVQLSVSQNIPISGAVIVSTPQDIALMDAHKGAEMFRKVNVPVLGLVQNMSVFQC
PQCKHKTHIFGADGARKLAQTLDLDVLGDVPLHLSIREASDMGQPVVFSQPESDEAKAYLNIAS
EVVRRLKSPPE

hide sequence

RefSeq Acc Id:

ENSRNOP00000029049 ⟸ ENSRNOT00000038074

RefSeq Acc Id:	XP_038967897 ⟸ XM_039111969
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038967898 ⟸ XM_039111970
- Peptide Label:	isoform X2

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694592

Promoter ID:

EPDNEW_R5116

Type:

initiation region

Name:

Nubpl_1

Description:

nucleotide binding protein-like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	72,891,727 - 72,891,787	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307232	AgrOrtholog
Ensembl Genes	ENSRNOG00000027444	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000029049	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000038074	ENTREZGENE, UniProtKB/TrEMBL
InterPro	ATPase-like_ParA/MinD	UniProtKB/TrEMBL
	Mrp_CS	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	YlxH/NBP35	UniProtKB/TrEMBL
KEGG Report	rno:299008	UniProtKB/TrEMBL
NCBI Gene	299008	ENTREZGENE
Pfam	ParA	UniProtKB/TrEMBL
PhenoGen	Nubpl	PhenoGen
PROSITE	MRP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	D3ZFQ3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Nubpl	nucleotide binding protein-like	Nubpl_predicted	nucleotide binding protein-like (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Nubpl_predicted	nucleotide binding protein-like (predicted)	RGD1307232_predicted	similar to hypothetical protein FLJ12660 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1307232_predicted	similar to hypothetical protein FLJ12660 (predicted)	LOC299008_predicted	similar to hypothetical protein FLJ12660 (predicted)	Symbol and Name status set to approved	1331353	APPROVED
2005-01-20	RGD1307232_predicted	similar to hypothetical protein FLJ12660 (predicted)	LOC299008_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC299008_predicted	similar to hypothetical protein FLJ12660 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations