Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | mitochondrial metabolism disease | | ISO | NUBPL (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:20818383 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | mitochondrial metabolism disease | | ISO | NUBPL (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:20818383 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Iron-sulfur cluster biogenesis in mammalian cells: New insights into the molecular mechanisms of cluster delivery. | Maio N and Rouault TA, Biochim Biophys Acta. 2015 Jun;1853(6):1493-512. doi: 10.1016/j.bbamcr.2014.09.009. Epub 2014 Sep 19. |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
5. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
6. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Nubpl (Rattus norvegicus - Norway rat) |
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NUBPL (Homo sapiens - human) |
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Nubpl (Mus musculus - house mouse) |
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Nubpl (Chinchilla lanigera - long-tailed chinchilla) |
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NUBPL (Pan paniscus - bonobo/pygmy chimpanzee) |
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NUBPL (Canis lupus familiaris - dog) |
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Nubpl (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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NUBPL (Sus scrofa - pig) |
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Nubpl (Heterocephalus glaber - naked mole-rat) |
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Variants in Nubpl
949 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D6Rat199 |
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MARC_7649-7650:996688053:1 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 2 | 14 | 6 | 6 | 12 | 24 | 31 | ||||||
Low | 3 | 41 | 43 | 35 | 19 | 35 | 8 | 11 | 62 | 11 | 10 | 11 | 8 |
Below cutoff |
RefSeq Transcripts | NM_001185025 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_008764655 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039111969 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039111970 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063261668 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063261669 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063261670 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063261671 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063261672 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BF282469 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BP486352 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473947 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CO399813 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ210674 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ231127 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000006 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000038074 ⟹ ENSRNOP00000029049 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000097874 ⟹ ENSRNOP00000097251 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000107636 ⟹ ENSRNOP00000087990 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001185025 ⟹ NP_001171954 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008764655 ⟹ XP_008762877 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039111969 ⟹ XP_038967897 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039111970 ⟹ XP_038967898 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063261668 ⟹ XP_063117738 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063261669 ⟹ XP_063117739 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063261670 ⟹ XP_063117740 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063261671 ⟹ XP_063117741 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063261672 ⟹ XP_063117742 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001171954 | (Get FASTA) | NCBI Sequence Viewer |
XP_008762877 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038967897 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038967898 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063117738 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063117739 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063117740 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063117741 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063117742 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDM03388 | (Get FASTA) | NCBI Sequence Viewer |
EDM03389 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000029049 | ||
ENSRNOP00000029049.3 | |||
ENSRNOP00000087990.1 | |||
ENSRNOP00000097251 | |||
ENSRNOP00000097251.1 |
RefSeq Acc Id: | NP_001171954 ⟸ NM_001185025 |
- Peptide Label: | precursor |
- UniProtKB: | D3ZFQ3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008762877 ⟸ XM_008764655 |
- Peptide Label: | isoform X8 |
- UniProtKB: | A0A8I6ARC8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000029049 ⟸ ENSRNOT00000038074 |
RefSeq Acc Id: | XP_038967897 ⟸ XM_039111969 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_038967898 ⟸ XM_039111970 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | ENSRNOP00000087990 ⟸ ENSRNOT00000107636 |
RefSeq Acc Id: | ENSRNOP00000097251 ⟸ ENSRNOT00000097874 |
RefSeq Acc Id: | XP_063117740 ⟸ XM_063261670 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_063117741 ⟸ XM_063261671 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_063117738 ⟸ XM_063261668 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_063117739 ⟸ XM_063261669 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_063117742 ⟸ XM_063261672 |
- Peptide Label: | isoform X7 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZFQ3-F1-model_v2 | AlphaFold | D3ZFQ3 | 1-319 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13694592 | ||||||||
Promoter ID: | EPDNEW_R5116 | ||||||||
Type: | initiation region | ||||||||
Name: | Nubpl_1 | ||||||||
Description: | nucleotide binding protein-like | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1307232 | AgrOrtholog |
BioCyc Gene | G2FUF-37577 | BioCyc |
Ensembl Genes | ENSRNOG00000027444 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000038074 | ENTREZGENE |
ENSRNOT00000038074.5 | UniProtKB/TrEMBL | |
ENSRNOT00000097874.1 | UniProtKB/TrEMBL | |
ENSRNOT00000107636.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.40.50.300 | UniProtKB/TrEMBL |
InterPro | ATPase-like_ParA/MinD | UniProtKB/TrEMBL |
Mrp_CS | UniProtKB/TrEMBL | |
NUBPL-like | UniProtKB/TrEMBL | |
P-loop_NTPase | UniProtKB/TrEMBL | |
YlxH/NBP35 | UniProtKB/TrEMBL | |
NCBI Gene | 299008 | ENTREZGENE |
PANTHER | IRON-SULFUR PROTEIN NUBPL | UniProtKB/TrEMBL |
PTHR42961 | UniProtKB/TrEMBL | |
Pfam | ParA | UniProtKB/TrEMBL |
PhenoGen | Nubpl | PhenoGen |
PROSITE | MRP | UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000027444 | RatGTEx |
Superfamily-SCOP | SSF52540 | UniProtKB/TrEMBL |
UniProt | A0A8I6A464_RAT | UniProtKB/TrEMBL |
A0A8I6ARC8 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZFQ3 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2021-12-23 | Nubpl | NUBP iron-sulfur cluster assembly factor like | Nubpl | nucleotide binding protein-like | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | Nubpl | nucleotide binding protein-like | Nubpl_predicted | nucleotide binding protein-like (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2006-03-30 | Nubpl_predicted | nucleotide binding protein-like (predicted) | RGD1307232_predicted | similar to hypothetical protein FLJ12660 (predicted) | Symbol and Name updated | 1299863 | APPROVED |
2005-01-20 | RGD1307232_predicted | similar to hypothetical protein FLJ12660 (predicted) | LOC299008_predicted | similar to hypothetical protein FLJ12660 (predicted) | Symbol and Name status set to approved | 1331353 | APPROVED |
2005-01-20 | RGD1307232_predicted | similar to hypothetical protein FLJ12660 (predicted) | LOC299008_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
2005-01-12 | LOC299008_predicted | similar to hypothetical protein FLJ12660 (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |