Nubpl (NUBP iron-sulfur cluster assembly factor like) - Rat Genome Database

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Gene: Nubpl (NUBP iron-sulfur cluster assembly factor like) Rattus norvegicus
Analyze
Symbol: Nubpl
Name: NUBP iron-sulfur cluster assembly factor like
RGD ID: 1307232
Description: Predicted to enable 4 iron, 4 sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly; mitochondrial respiratory chain complex I assembly; and mitochondrion morphogenesis. Predicted to be located in plasma membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 21. Orthologous to human NUBPL (NUBP iron-sulfur cluster assembly factor, mitochondrial); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: iron-sulfur protein NUBPL; LOC299008; nucleotide binding protein-like; nucleotide-binding protein-like; RGD1307232; similar to hypothetical protein FLJ12660
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2669,559,278 - 69,781,254 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl669,559,291 - 69,781,253 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx669,990,443 - 70,205,300 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0670,297,085 - 70,511,949 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0669,736,622 - 69,951,482 (+)NCBIRnor_WKY
Rnor_6.0672,891,758 - 73,147,837 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,891,725 - 73,148,536 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0682,453,631 - 82,517,904 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0682,557,115 - 82,709,215 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4672,264,459 - 72,306,567 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1672,267,584 - 72,479,338 (+)NCBI
Celera668,435,325 - 68,646,422 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrion  (IBA,ISO)
plasma membrane  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Iron-sulfur cluster biogenesis in mammalian cells: New insights into the molecular mechanisms of cluster delivery. Maio N and Rouault TA, Biochim Biophys Acta. 2015 Jun;1853(6):1493-512. doi: 10.1016/j.bbamcr.2014.09.009. Epub 2014 Sep 19.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18614015   PMID:19752196  


Genomics

Comparative Map Data
Nubpl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2669,559,278 - 69,781,254 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl669,559,291 - 69,781,253 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx669,990,443 - 70,205,300 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0670,297,085 - 70,511,949 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0669,736,622 - 69,951,482 (+)NCBIRnor_WKY
Rnor_6.0672,891,758 - 73,147,837 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,891,725 - 73,148,536 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0682,453,631 - 82,517,904 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0682,557,115 - 82,709,215 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4672,264,459 - 72,306,567 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1672,267,584 - 72,479,338 (+)NCBI
Celera668,435,325 - 68,646,422 (+)NCBICelera
Cytogenetic Map6q23NCBI
NUBPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381431,561,404 - 31,861,224 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1431,489,956 - 31,861,224 (+)EnsemblGRCh38hg38GRCh38
GRCh371432,030,610 - 32,330,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361431,100,342 - 31,400,181 (+)NCBINCBI36Build 36hg18NCBI36
Build 341431,100,428 - 31,399,259NCBI
Celera1411,895,904 - 12,195,785 (+)NCBICelera
Cytogenetic Map14q12NCBI
HuRef1412,147,896 - 12,447,827 (+)NCBIHuRef
CHM1_11432,029,883 - 32,329,829 (+)NCBICHM1_1
T2T-CHM13v2.01425,758,636 - 26,058,537 (+)NCBIT2T-CHM13v2.0
Nubpl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391252,144,529 - 52,357,753 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1252,144,520 - 52,359,527 (+)EnsemblGRCm39 Ensembl
GRCm381252,097,746 - 52,310,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1252,097,737 - 52,312,744 (+)EnsemblGRCm38mm10GRCm38
MGSCv371253,198,733 - 53,411,946 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361253,019,357 - 53,234,357 (+)NCBIMGSCv36mm8
Celera1253,404,089 - 53,607,597 (+)NCBICelera
Cytogenetic Map12C1NCBI
Nubpl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540928,872,189 - 29,073,206 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540928,873,609 - 29,073,196 (-)NCBIChiLan1.0ChiLan1.0
NUBPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11430,534,997 - 30,822,227 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01412,338,341 - 12,628,346 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
NUBPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1810,796,462 - 11,026,804 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl810,796,459 - 11,090,920 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha810,659,000 - 10,889,204 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0810,898,957 - 11,129,569 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl810,898,349 - 11,129,522 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1810,580,802 - 10,814,041 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0810,664,161 - 10,894,603 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0810,942,563 - 11,173,068 (+)NCBIUU_Cfam_GSD_1.0
Nubpl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864042,635,534 - 42,858,568 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364946,141,444 - 6,365,537 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUBPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl767,784,639 - 68,028,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1767,785,652 - 68,028,561 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2772,498,664 - 72,573,328 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Nubpl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624820567,217 - 791,817 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624820562,180 - 767,434 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D6Rat199  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2669,774,860 - 69,775,071 (+)MAPPERmRatBN7.2
Rnor_6.0673,141,444 - 73,141,654NCBIRnor6.0
Rnor_5.0682,702,823 - 82,703,033UniSTSRnor5.0
RGSC_v3.4672,469,819 - 72,470,030RGDRGSC3.4
RGSC_v3.4672,469,820 - 72,470,030UniSTSRGSC3.4
RGSC_v3.1672,472,945 - 72,473,156RGD
Celera668,640,034 - 68,640,248UniSTS
SHRSP x BN Map644.5799RGD
SHRSP x BN Map644.5799UniSTS
Cytogenetic Map6q23UniSTS
MARC_7649-7650:996688053:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2669,600,566 - 69,600,797 (+)MAPPERmRatBN7.2
mRatBN7.27133,244,430 - 133,245,161 (+)MAPPERmRatBN7.2
Rnor_6.07143,717,527 - 143,718,257NCBIRnor6.0
Rnor_6.0672,933,904 - 72,934,134NCBIRnor6.0
Rnor_5.07141,514,111 - 141,514,841UniSTSRnor5.0
Rnor_5.0682,494,665 - 82,494,895UniSTSRnor5.0
RGSC_v3.4672,305,758 - 72,305,988UniSTSRGSC3.4
RGSC_v3.47140,852,606 - 140,853,336UniSTSRGSC3.4
Celera7129,679,761 - 129,680,491UniSTS
Celera668,476,527 - 68,476,757UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map6q23UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
4889848Pur25Proteinuria QTL 25140.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)66304056271636266Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000038074
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 14 6 6 12 24 31
Low 3 41 43 35 19 35 8 11 62 11 10 11 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000038074   ⟹   ENSRNOP00000029049
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl669,559,291 - 69,781,252 (+)Ensembl
Rnor_6.0 Ensembl672,891,725 - 73,148,536 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097874   ⟹   ENSRNOP00000097251
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl669,559,550 - 69,781,253 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107636   ⟹   ENSRNOP00000087990
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl669,559,291 - 69,771,738 (+)Ensembl
RefSeq Acc Id: NM_001185025   ⟹   NP_001171954
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2669,559,320 - 69,781,253 (+)NCBI
Rnor_6.0672,891,758 - 73,147,836 (+)NCBI
Rnor_5.0682,453,631 - 82,517,904 (+)NCBI
Rnor_5.0682,557,115 - 82,709,215 (+)NCBI
Celera668,435,325 - 68,646,422 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764655   ⟹   XP_008762877
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2669,559,278 - 69,781,254 (+)NCBI
Rnor_6.0672,891,795 - 73,147,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111969   ⟹   XP_038967897
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2669,559,278 - 69,767,706 (+)NCBI
RefSeq Acc Id: XM_039111970   ⟹   XP_038967898
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2669,559,278 - 69,645,716 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001171954 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762877 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967897 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967898 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM03388 (Get FASTA)   NCBI Sequence Viewer  
  EDM03389 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001171954   ⟸   NM_001185025
- Peptide Label: precursor
- UniProtKB: D3ZFQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762877   ⟸   XM_008764655
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000029049   ⟸   ENSRNOT00000038074
RefSeq Acc Id: XP_038967897   ⟸   XM_039111969
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038967898   ⟸   XM_039111970
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000087990   ⟸   ENSRNOT00000107636
RefSeq Acc Id: ENSRNOP00000097251   ⟸   ENSRNOT00000097874

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFQ3-F1-model_v2 AlphaFold D3ZFQ3 1-319 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694592
Promoter ID:EPDNEW_R5116
Type:initiation region
Name:Nubpl_1
Description:nucleotide binding protein-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0672,891,727 - 72,891,787EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307232 AgrOrtholog
BioCyc Gene G2FUF-37577 BioCyc
Ensembl Genes ENSRNOG00000027444 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000029049 ENTREZGENE
  ENSRNOP00000029049.3 UniProtKB/TrEMBL
  ENSRNOP00000087990.1 UniProtKB/TrEMBL
  ENSRNOP00000097251 ENTREZGENE
  ENSRNOP00000097251.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038074 ENTREZGENE
  ENSRNOT00000038074.5 UniProtKB/TrEMBL
  ENSRNOT00000097874 ENTREZGENE
  ENSRNOT00000097874.1 UniProtKB/TrEMBL
  ENSRNOT00000107636.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro ATPase-like_ParA/MinD UniProtKB/TrEMBL
  Mrp_CS UniProtKB/TrEMBL
  NUBPL-like UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  YlxH/NBP35 UniProtKB/TrEMBL
KEGG Report rno:299008 UniProtKB/TrEMBL
NCBI Gene 299008 ENTREZGENE
PANTHER PTHR42961 UniProtKB/TrEMBL
Pfam ParA UniProtKB/TrEMBL
PhenoGen Nubpl PhenoGen
PROSITE MRP UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I6A464_RAT UniProtKB/TrEMBL
  A0A8I6ARC8_RAT UniProtKB/TrEMBL
  D3ZFQ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-12-23 Nubpl  NUBP iron-sulfur cluster assembly factor like  Nubpl  nucleotide binding protein-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Nubpl  nucleotide binding protein-like   Nubpl_predicted  nucleotide binding protein-like (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Nubpl_predicted  nucleotide binding protein-like (predicted)  RGD1307232_predicted  similar to hypothetical protein FLJ12660 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1307232_predicted  similar to hypothetical protein FLJ12660 (predicted)  LOC299008_predicted  similar to hypothetical protein FLJ12660 (predicted)  Symbol and Name status set to approved 1331353 APPROVED
2005-01-20 RGD1307232_predicted  similar to hypothetical protein FLJ12660 (predicted)  LOC299008_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC299008_predicted  similar to hypothetical protein FLJ12660 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL