D6Rat221 Marker Search Result - Rat Genome Database

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Marker: D6Rat221

Symbol: D6Rat221
Previously known as: oxsts11283; R0320-C05; 
RGD ID: 42325
Expected Size: 230 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8670,950,057 - 70,950,287 (+)Marker Load Pipeline
mRatBN7.2665,223,214 - 65,223,444 (+)MAPPERmRatBN7.2
Rnor_6.0668,459,914 - 68,460,143NCBIRnor6.0
Rnor_5.0678,031,927 - 78,032,156UniSTSRnor5.0
RGSC_v3.4667,709,191 - 67,709,421RGDRGSC3.4
RGSC_v3.4667,709,192 - 67,709,421UniSTSRGSC3.4
RGSC_v3.1667,712,317 - 67,712,547RGD
Celera664,163,949 - 64,164,178UniSTS
FHH x ACI Map653.62RGD
FHH x ACI Map653.62UniSTS


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GAGTAACAGTGGGGATTGTATGG
Reverse Primer TGGCTCTTCTACACTCATGCA
 
Template 
ACTTTAAGGCAGCTATTTATGTCCTTCTTCAAGTCCTCTAACATCATCATGAGTTGTGATTTTA
AATCAAAATCTTGCTTTTTCACTGTGTTGGGGTATCCAGGGGCTTGCTGTGGTGGGGGAACTGG
GTTCTGATGATGCCAAGTGGCCTTGGTTTCTGTTCCCTTAGGTCTTTGCCCTTGCCCTGNTGCC
ATCTACTTTTCTCCTGCTCTTAGCTGGTCTTTTCTGTTCTTCTAACAGTGCCCTTGACCCTCCC
TGTAAGACCTTTGTGTTCAGCTCCTTCCTGGAGACTGGNTTTTCTCCCAGACAGAATCTTTGTA
CAAGAACATTTCCATTATACTTCATTCTAGGTTTTAAAGTGAGTAACAGTGGGGATTGTATGGN
TGTTACTGAATTGTCAAATCTCATTTTTTATCTTGCATCTTCTGTGTTTATTTAAGGAAAGTAG
GCACACATGATAGCATTTAAATGTTTAATTTTACTCATGTTTATTACATTTAATGTGTGTTTGT
GTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGTATGTATGCAT
GAGTGTAGAAGAGCCAGTGGGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCGTTTCC
TGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATANAGTGTNNA
GCCTGGGGNGCCNAATGAGTGAGCNACTCACATTAATTGNNTGCGCTCATGCNGCTTNCANNCN
GGNNACTGTNGTGGCCAGNNGNNTTAATGNATTNGGGNCCAAAANGGNGG

Region

Nucleotide Sequences
GenBank Nucleotide JH615520.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)66304056271636266Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat


Additional Information