D6Rat135 Marker Search Result - Rat Genome Database

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Marker: D6Rat135

Symbol: D6Rat135
Previously known as: oxsts11199; R0221-A11; 
RGD ID: 41244
Expected Size: 151 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2647,807,502 - 47,807,653 (+)MAPPERmRatBN7.2
Rnor_6.0650,500,634 - 50,500,784NCBIRnor6.0
Rnor_5.0659,175,861 - 59,176,011UniSTSRnor5.0
RGSC_v3.4649,087,615 - 49,087,766RGDRGSC3.4
RGSC_v3.4649,087,616 - 49,087,766UniSTSRGSC3.4
RGSC_v3.1649,090,528 - 49,091,054RGD
Celera647,010,483 - 47,010,633UniSTS
RH 2.0 Map6452.6RGD
SHRSP x BN Map635.2698RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   LOC100361178  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines
5. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer CCGGAAAAATCACAACTATCG
Reverse Primer GACCTGACAGGACATCGTCA
 
Template 
ANAAGCTGCATGNTGCAGGTCGACTCTAGAGGATCCCCCTTGGCCGTGGGGATGGTTCAGGCAA
ATGTTTCCTACCCTATCTAAGCATGAGGATGTGAGTTCAGATCCCAAACATCCACATAAGAACC
AGGCACTGACAGCTGTCTGCAACCTTAAGAAGGGGGGTAGGCAGCCTAGGCAGTCTCAAACTCC
AGGTTCAGTAGGTGAACTTGTTGAAAAAAAAAACCAATGTTGTAAGCAACAGAAGAAGAGACCT
GACAGGACATCGTCAATCCTTCACACTTAGGTGTACCCCAACACATACACACACACACACACAC
ACACACACACACACACACACACACCTGTGAAAGGAAGGAGATATAGTCTTCTTTTCCACAACGA
TAGTTGTGATTTTTCCGGATAGTCCTAAAATACTTGAACTAAAAAATATATCAAAGGAGTACAG
TGTACTATTTGTATCCCTGGTCATATTTATGGTCTCCCCAAACTTTAANCTAACGATAGTTTTG
CGGATGAGCACTCTCAANTGTTGAATTAGATAGGATCCTTTATATANTGCT
Strain, Expected Size(s)

ACI/N 151 AVN/Orl 151 BBDP/Rhw 151
BBDR/Rhw 151 BC/CpbU 151 BDIX/Han 151
BDVII/Cub 151 BN-Lx/Cub 153 BN/SsNHsd 153
BP/Cub 151 BUF/Pit 153 COP/OlaHsd 151
DA/PitN 151 DON/Melb 159 F344/Pit 159
FHH/Eur 159 GH/Omr 159 GK/KyoSwe 153
IS/Kyo 161 LE/Mol 159 LEW/Pit 151
LN/Mav 151 LOU/CHan 161 M520/N 161
MHS/Gib 161 MNR/N 151 MNRA/N 151
MNS/Gib 151 MR/Pit 151 NEDH/K 151
NP9 151 ODU/N 153 OKA/Wsl 151
OM/Ztm 151 P5C 159 PVG/Pit 151
SD/Rij 155 SHR/OlaHsd 151 SHRSP/Riv 151
SR/Jr 151 SS/Jr 151 WAG/RijKyo 159
WF/Pit 159 WKY/OlaHsd 153 WN/N 159
WTC/Kyo 153


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
41147221Lamb2-ps1laminin subunit beta 2, pseudogene 164769733747811453Rat
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63432335751121479Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat

1 to 10 of 25 rows


Database
Acc Id
Source(s)
NCBI Gene 100361178 UniSTS