D6Rat83 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Marker: D6Rat83

Symbol: D6Rat83
Previously known as: oxsts11309; R0078-B01; 
RGD ID: 38758
Expected Size: 144 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8645,986,085 - 45,986,229 (+)Marker Load Pipeline
mRatBN7.2640,257,374 - 40,257,518 (+)MAPPERmRatBN7.2
Rnor_6.0642,780,062 - 42,780,205NCBIRnor6.0
Rnor_5.0652,492,693 - 52,492,836UniSTSRnor5.0
RGSC_v3.4641,236,906 - 41,237,050RGDRGSC3.4
RGSC_v3.4641,236,907 - 41,237,050UniSTSRGSC3.4
RGSC_v3.1641,239,832 - 41,240,175RGD
Celera639,556,304 - 39,556,437UniSTS
SHRSP x BN Map633.0298RGD
SHRSP x BN Map633.0298UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   ACI/N   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer TCTCGCACACCTAGGGTCTT
Reverse Primer TTCTACCGTCTTGCCCACTC
 
Template 
CAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACCTCGTCTCTTTCCTGCTACAGCC
TCTTCTACCGTCTTGCCCACTCCCACCCCTTCACTGCCTCAACCAGAGACCAACACACACACAC
ACACACACACACACACACTCCACAAGTTTGCCCCTTCTCATTGCTCAATGGTAAAGACCCTAGG
TGTGCGAGATTGGGGCAAGATTGGCTACCAGTAAATTTGAAAGGAGACTGTAGCAACTGCTCTG
GTTAAAGAAAGGTTTCCCCAGAGTGAACGTGGCCTGGAGGATCAGTGGATTGGCGTGCTGAGCA
GAGAACCTTTGCAGATCTAGCCTTAAGAGCTCTGAAGCCCAAGTCTCCATTGTGGGTACCGAGC
TCGAATTCGTAATCATGGTCATAGC
Strain, Expected Size(s)

ACI/N 136 AVN/Orl 148 BBDP/Rhw 136
BBDR/Rhw 136 BC/CpbU 160 BDIX/Han 136
BDVII/Cub 136 BN/SsNHsd 146 BP/Cub 148
BUF/Pit 142 COP/OlaHsd 136 DA/PitN 136
DON/Melb 136 F344/Pit 136 FHH/Eur 136
GH/Omr 136 GK/KyoSwe 136 IS/Kyo 164
LE/Mol 136 LEW/Pit 136 LH/Mav 136
LN/Mav 136 LOU/CHan 136 MHS/Gib 136
MNR/N 160 MNRA/N 160 MNS/Gib 136
MR/Pit 160 NEDH/K 136 NP9 136
ODU/N 136 OKA/Wsl 136 OM/Ztm 158
P5C 136 SD/Rij 136 SHR/OlaHsd 136
SHRSP/Riv 132 SR/Jr 142 SS/Jr 142
WAG/RijKyo 136 WF/Pit 136 WIST/Nhg 158
WKY/OlaHsd 136 WN/N 136 WTC/Kyo 136


GenBank Nucleotide DH835251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 34 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63432335751121479Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat

1 to 10 of 34 rows