D6Rat58 Marker Search Result - Rat Genome Database

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Marker: D6Rat58

Symbol: D6Rat58
Previously known as: oxsts11293; R0060-D01; 
RGD ID: 37704
Expected Size: 178 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2657,786,523 - 57,786,723 (+)MAPPERmRatBN7.2
mRatBN7.2657,786,523 - 57,786,753 (+)MAPPERmRatBN7.2
Rnor_6.0660,662,751 - 60,662,950NCBIRnor6.0
Rnor_6.0660,662,751 - 60,663,159NCBIRnor6.0
Rnor_5.0670,250,498 - 70,250,906UniSTSRnor5.0
Rnor_5.0670,250,498 - 70,250,697UniSTSRnor5.0
RGSC_v3.4660,003,377 - 60,003,576UniSTSRGSC3.4
RGSC_v3.4660,003,376 - 60,003,576RGDRGSC3.4
RGSC_v3.1660,006,502 - 60,006,702RGD
Celera656,825,029 - 56,825,228UniSTS
FHH x ACI Map650.3599RGD
FHH x ACI Map650.3599UniSTS
Cytogenetic Map6q21UniSTS
Is Marker For: Genes:   Dock4  




#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer TGTGAGACCCTGTCTCAAATACA
Reverse Primer ATCAGGAGCAATGTTCGACC
 
Template 
GCCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATTCCCCTANGATCCCCCTGTAA
TCATGTACATACTACATTGAGAGTCAAGGCAAAATTGTCATTTCCTCAGTCTGCTCCAGTCATC
TGAAGATATGTTGTATGGAAATCAGGAGCAATGTTCGACCACTGAAATTATTAATTTTCTACAT
CTTATTAATAGCATTTATGAAGTATACTCTTTGCATCTGACCTACCAAGGATAAACAAGGATTA
ATTTACTCCTTACTAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTATTTGAGACAGGGT
CTCACATAGTCTAGGCTAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTG
TGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTANAGC
CNGGGGTGCCTAANGNGTGNGCTAACTCACATTAATNGCGTTGCGCTCACTGCCCGCTTTNCAG
TCGGGAAACTGTCGT


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1561724Dock4dedicator of cytokinesis 465751292957902597Rat
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat

1 to 10 of 24 rows


Database
Acc Id
Source(s)
NCBI Gene 366608 UniSTS