Itsn2 (intersectin 2) - Rat Genome Database

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Gene: Itsn2 (intersectin 2) Rattus norvegicus
Analyze
Symbol: Itsn2
Name: intersectin 2
RGD ID: 1590890
Description: Predicted to enable molecular adaptor activity. Predicted to be involved in clathrin-dependent synaptic vesicle endocytosis and positive regulation of dendrite extension. Predicted to be located in centrosome. Predicted to be active in several cellular components, including clathrin-coated pit; intracellular vesicle; and presynaptic membrane. Orthologous to human ITSN2 (intersectin 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; chloroprene.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: intersectin-2; LOC313934; similar to Intersectin-2 (SH3 domain-containing protein 1B) (SH3P18) (SH3P18-like WASP-associated protein)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2627,616,645 - 27,727,373 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl627,600,406 - 27,727,124 (+)Ensembl
Rnor_6.0630,098,378 - 30,208,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl630,098,380 - 30,187,337 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0639,701,659 - 39,790,623 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera627,085,036 - 27,196,783 (+)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16903783   PMID:19056867   PMID:20448150   PMID:20479469   PMID:23999003  


Genomics

Comparative Map Data
Itsn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2627,616,645 - 27,727,373 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl627,600,406 - 27,727,124 (+)Ensembl
Rnor_6.0630,098,378 - 30,208,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl630,098,380 - 30,187,337 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0639,701,659 - 39,790,623 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera627,085,036 - 27,196,783 (+)NCBICelera
Cytogenetic Map6q14NCBI
ITSN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38224,202,864 - 24,361,368 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl224,202,864 - 24,360,536 (-)EnsemblGRCh38hg38GRCh38
GRCh37224,425,733 - 24,583,405 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36224,279,239 - 24,436,881 (-)NCBINCBI36hg18NCBI36
Build 34224,354,843 - 24,495,028NCBI
Celera224,266,029 - 24,423,608 (-)NCBI
Cytogenetic Map2p23.3NCBI
HuRef224,164,460 - 24,322,301 (-)NCBIHuRef
CHM1_1224,355,106 - 24,512,765 (-)NCBICHM1_1
T2T-CHM13v2.0224,237,561 - 24,395,154 (-)NCBI
Itsn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,642,792 - 4,763,952 (+)NCBIGRCm39mm39
GRCm39 Ensembl124,642,638 - 4,763,962 (+)Ensembl
GRCm38124,592,643 - 4,713,952 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl124,592,638 - 4,713,962 (+)EnsemblGRCm38mm10GRCm38
MGSCv37124,599,814 - 4,720,758 (+)NCBIGRCm37mm9NCBIm37
MGSCv36124,606,965 - 4,727,848 (+)NCBImm8
Celera124,524,713 - 4,645,575 (+)NCBICelera
Cytogenetic Map12A1.1NCBI
Itsn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554696,358,131 - 6,493,956 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554696,358,131 - 6,493,956 (-)NCBIChiLan1.0ChiLan1.0
ITSN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A24,296,617 - 24,451,013 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A24,297,373 - 24,419,593 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A24,199,600 - 24,354,314 (-)NCBIMhudiblu_PPA_v0panPan3
ITSN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11718,627,543 - 18,756,669 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1718,627,935 - 18,756,114 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1718,525,190 - 18,654,045 (-)NCBI
ROS_Cfam_1.01718,901,627 - 19,030,962 (-)NCBI
ROS_Cfam_1.0 Ensembl1718,901,631 - 19,030,603 (-)Ensembl
UMICH_Zoey_3.11718,638,301 - 18,766,826 (-)NCBI
UNSW_CanFamBas_1.01718,647,161 - 18,776,232 (-)NCBI
UU_Cfam_GSD_1.01718,687,565 - 18,789,791 (-)NCBI
Itsn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629262,996,753 - 63,123,155 (-)NCBI
SpeTri2.0NW_0049364937,716,424 - 7,842,818 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITSN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3114,363,529 - 114,508,444 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13114,363,319 - 114,508,447 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23121,628,711 - 121,773,090 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITSN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11483,297,061 - 83,452,784 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1483,297,259 - 83,453,335 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604528,716,121 - 28,869,191 (-)NCBIVero_WHO_p1.0
Itsn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247386,480,203 - 6,637,713 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D6Got197  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2627,653,295 - 27,653,421 (-)MAPPERmRatBN7.2
Rnor_6.0630,172,059 - 30,172,184NCBIRnor6.0
Rnor_5.0639,716,817 - 39,716,942UniSTSRnor5.0
Celera627,122,727 - 27,122,870UniSTS
RH 3.4 Map6115.4RGD
RH 3.4 Map6115.4UniSTS
RH 2.0 Map6229.6RGD
Cytogenetic Map6q12UniSTS
RH128822  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2627,727,166 - 27,727,346 (-)MAPPERmRatBN7.2
Rnor_6.0630,098,405 - 30,098,584NCBIRnor6.0
Rnor_5.0639,790,417 - 39,790,596UniSTSRnor5.0
Celera627,196,577 - 27,196,756UniSTS
RH 3.4 Map6117.3UniSTS
Cytogenetic Map6q12UniSTS
AA850325  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2627,695,109 - 27,695,290 (-)MAPPERmRatBN7.2
Rnor_6.0630,129,456 - 30,129,636NCBIRnor6.0
Rnor_5.0639,759,365 - 39,759,545UniSTSRnor5.0
Celera627,164,556 - 27,164,736UniSTS
RH 3.4 Map6117.6UniSTS
Cytogenetic Map6q12UniSTS
RH138620  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2627,663,272 - 27,663,472 (-)MAPPERmRatBN7.2
Rnor_6.0630,161,693 - 30,161,892NCBIRnor6.0
Rnor_5.0639,727,109 - 39,727,308UniSTSRnor5.0
Celera627,132,720 - 27,132,919UniSTS
RH 3.4 Map6116.49UniSTS
Cytogenetic Map6q12UniSTS
BM386909  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2627,692,922 - 27,693,125 (-)MAPPERmRatBN7.2
Rnor_6.0630,131,621 - 30,131,823NCBIRnor6.0
Rnor_5.0639,757,178 - 39,757,380UniSTSRnor5.0
Celera627,162,369 - 27,162,571UniSTS
RH 3.4 Map6116.49UniSTS
Cytogenetic Map6q12UniSTS
AL033711  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21125,255,754 - 25,255,877 (+)MAPPERmRatBN7.2
mRatBN7.2627,673,081 - 27,673,204 (-)MAPPERmRatBN7.2
Rnor_6.0630,151,960 - 30,152,082NCBIRnor6.0
Rnor_6.01125,674,523 - 25,674,645NCBIRnor6.0
Rnor_5.0639,736,919 - 39,737,041UniSTSRnor5.0
Rnor_5.01129,298,025 - 29,298,147UniSTSRnor5.0
RGSC_v3.41125,761,857 - 25,761,979UniSTSRGSC3.4
Celera1125,055,477 - 25,055,599UniSTS
Celera627,142,530 - 27,142,652UniSTS
Cytogenetic Map6q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:79
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000073870, ENSRNOT00000074150
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 52 36 19 36 8 8 62 35 36 11 8
Low 5 5 5 3 12 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001067254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003750126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003754161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_233945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000074150   ⟹   ENSRNOP00000065329
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl627,643,958 - 27,727,124 (+)Ensembl
Rnor_6.0 Ensembl630,098,380 - 30,187,337 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099866   ⟹   ENSRNOP00000089614
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl627,600,406 - 27,727,124 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100901   ⟹   ENSRNOP00000094789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl627,600,406 - 27,727,124 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119587   ⟹   ENSRNOP00000096723
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl627,600,406 - 27,727,124 (+)Ensembl
RefSeq Acc Id: XM_039113102   ⟹   XP_038969030
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,616,812 - 27,727,373 (+)NCBI
RefSeq Acc Id: XM_039113103   ⟹   XP_038969031
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,616,645 - 27,727,373 (+)NCBI
RefSeq Acc Id: XM_039113104   ⟹   XP_038969032
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,617,258 - 27,727,373 (+)NCBI
RefSeq Acc Id: XM_039113105   ⟹   XP_038969033
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,616,812 - 27,727,373 (+)NCBI
RefSeq Acc Id: XM_039113106   ⟹   XP_038969034
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,616,812 - 27,727,373 (+)NCBI
RefSeq Acc Id: XM_039113107   ⟹   XP_038969035
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,616,812 - 27,727,373 (+)NCBI
RefSeq Acc Id: XM_039113108   ⟹   XP_038969036
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,616,812 - 27,727,373 (+)NCBI
RefSeq Acc Id: XM_039113109   ⟹   XP_038969037
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,616,812 - 27,723,699 (+)NCBI
RefSeq Acc Id: XM_039113110   ⟹   XP_038969038
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2627,616,812 - 27,695,503 (+)NCBI
Reference Sequences
RefSeq Acc Id: ENSRNOP00000065329   ⟸   ENSRNOT00000074150
RefSeq Acc Id: XP_038969031   ⟸   XM_039113103
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038969030   ⟸   XM_039113102
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038969033   ⟸   XM_039113105
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038969035   ⟸   XM_039113107
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038969036   ⟸   XM_039113108
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038969034   ⟸   XM_039113106
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038969037   ⟸   XM_039113109
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038969038   ⟸   XM_039113110
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038969032   ⟸   XM_039113104
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000096723   ⟸   ENSRNOT00000119587
RefSeq Acc Id: ENSRNOP00000094789   ⟸   ENSRNOT00000100901
RefSeq Acc Id: ENSRNOP00000089614   ⟸   ENSRNOT00000099866

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R7A6-F1-model_v2 AlphaFold M0R7A6 1-1716 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590890 AgrOrtholog
BioCyc Gene G2FUF-38270 BioCyc
Ensembl Genes ENSRNOG00000046741 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000065329 ENTREZGENE
  ENSRNOP00000065329.3 UniProtKB/TrEMBL
  ENSRNOP00000089614 ENTREZGENE
  ENSRNOP00000089614.1 UniProtKB/TrEMBL
  ENSRNOP00000094789 ENTREZGENE
  ENSRNOP00000094789.1 UniProtKB/TrEMBL
  ENSRNOP00000096723 ENTREZGENE
  ENSRNOP00000096723.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074150 ENTREZGENE
  ENSRNOT00000074150.4 UniProtKB/TrEMBL
  ENSRNOT00000099866 ENTREZGENE
  ENSRNOT00000099866.1 UniProtKB/TrEMBL
  ENSRNOT00000100901 ENTREZGENE
  ENSRNOT00000100901.1 UniProtKB/TrEMBL
  ENSRNOT00000119587 ENTREZGENE
  ENSRNOT00000119587.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/TrEMBL
InterPro C2_Ca-dep UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  EF-hand-like_dom UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  EPS15_homology UniProtKB/TrEMBL
  Intersectin-2 UniProtKB/TrEMBL
  Intersectin-2_SH3_1 UniProtKB/TrEMBL
  Intersectin-2_SH3_2 UniProtKB/TrEMBL
  Intersectin-2_SH3_3 UniProtKB/TrEMBL
  Intersectin-2_SH3_4 UniProtKB/TrEMBL
  Intersectin-2_SH3_5 UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene 313934 ENTREZGENE
PANTHER PTHR11216:SF29 UniProtKB/TrEMBL
Pfam EF-hand_4 UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
  PH_13 UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PhenoGen Itsn2 PhenoGen
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE DH_2 UniProtKB/TrEMBL
  EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  PS50004 UniProtKB/TrEMBL
  PS50031 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00027 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
  SM00239 UniProtKB/TrEMBL
Superfamily-SCOP DH-domain UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
  SSF49562 UniProtKB/TrEMBL
UniProt A0A8I6A8K6_RAT UniProtKB/TrEMBL
  A0A8I6AMD2_RAT UniProtKB/TrEMBL
  A0A8I6ASA9_RAT UniProtKB/TrEMBL
  M0R7A6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Itsn2  intersectin 2  LOC313934  similar to Intersectin-2 (SH3 domain-containing protein 1B) (SH3P18) (SH3P18-like WASP-associated protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC313934  similar to Intersectin-2 (SH3 domain-containing protein 1B) (SH3P18) (SH3P18-like WASP-associated protein)      Symbol and Name status set to provisional 70820 PROVISIONAL