Capn13 (calpain 13) - Rat Genome Database

Name: Capn13
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| FTP Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Capn13 (calpain 13) Rattus norvegicus

Analyze

Symbol:

Capn13

Name:

calpain 13

RGD ID:

1562682

Description:

Predicted to have calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in negative regulation of apoptotic process and proteolysis. Predicted to localize to cytoplasm. Orthologous to human CAPN13 (calpain 13); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

calcium-activated neutral proteinase 13; calpain-13; CANP 13; MGC109045

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CAPN13 (calpain 13)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Capn13 (calpain 13)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Capn13 (calpain 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CAPN13 (calpain 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CAPN13 (calpain 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Capn13 (calpain 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CAPN13 (calpain 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CAPN13 (calpain 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Capn13 (calpain 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CAPN13 (calpain 13)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Capn13 (calpain 13)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	si:ch211-202f3.4	Alliance	DIOPT (OMA\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CalpC	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	6	24,579,590 - 24,676,536 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	24,579,622 - 24,676,524 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	34,429,074 - 34,525,225 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	22,129,421 - 22,224,086 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	6	21,618,581 - 21,707,279 (+)	NCBI		Celera
Cytogenetic Map	6	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

dextran sulfate (ISO)

furan (EXP)

naphthalene (EXP)

nickel atom (ISO)

testosterone (EXP)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of apoptotic process (IBA)

proteolysis (IBA)

Cellular Component

cytoplasm (IBA)

Molecular Function

calcium ion binding (IEA)

calcium-dependent cysteine-type endopeptidase activity (IBA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions
5.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334

Genomics

Comparative Map Data

Capn13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	6	24,579,590 - 24,676,536 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	24,579,622 - 24,676,524 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	34,429,074 - 34,525,225 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	22,129,421 - 22,224,086 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	6	21,618,581 - 21,707,279 (+)	NCBI		Celera
Cytogenetic Map	6	q13	NCBI

CAPN13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	30,722,771 - 30,820,542 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	30,722,771 - 30,809,527 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	30,945,637 - 31,030,383 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	30,799,141 - 30,883,815 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	30,857,290 - 30,941,962	NCBI
Celera	2	30,788,751 - 30,873,413 (-)	NCBI
Cytogenetic Map	2	p23.1	NCBI
HuRef	2	30,683,655 - 30,768,006 (-)	NCBI		HuRef
CHM1_1	2	30,875,937 - 30,960,642 (-)	NCBI		CHM1_1

Capn13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	73,613,451 - 73,706,376 (-)	NCBI	GRCm39		mm39
GRCm38	17	73,306,456 - 73,399,381 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	73,306,464 - 73,400,866 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	73,655,804 - 73,748,636 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	17	73,211,346 - 73,304,178 (-)	NCBI			mm8
Celera	17	77,591,180 - 77,684,049 (-)	NCBI		Celera
Cytogenetic Map	17	E2	NCBI

Capn13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	12,497,922 - 12,552,125 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955469	12,497,890 - 12,569,453 (-)	NCBI	ChiLan1.0	ChiLan1.0

CAPN13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	30,808,764 - 30,893,391 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	2A	30,735,412 - 30,820,237 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

CAPN13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	17	24,384,978 - 24,463,355 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	17	24,384,992 - 24,446,201 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Capn13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936493	2,283,955 - 2,338,868 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CAPN13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	108,531,147 - 108,620,616 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	108,530,743 - 108,621,119 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	115,216,150 - 115,260,923 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CAPN13
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	76,695,370 - 76,810,699 (+)	NCBI
ChlSab1.1 Ensembl	14	76,704,809 - 76,793,342 (+)	Ensembl

Capn13
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624738	12,548,357 - 12,655,347 (-)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578758	Tcas9	Tongue tumor susceptibility QTL 9	3.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	6	1	25048718	Rat
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	35623029	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	35623029	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	35623029	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	35623029	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	35623029	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	41917988	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	42388212	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	42388212	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42388212	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	42388212	Rat
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	42388212	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	43665660	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	43665660	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	43665660	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	44015370	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	44570292	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	75623393	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	1120393	28706721	Rat
2292589	Emca10	Estrogen-induced mammary cancer QTL 10		0.048	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	1120393	46120393	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	1120393	75023446	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	2537030	111715717	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	6161722	76002731	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	6161722	76002731	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	7009971	115379601	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	10173862	55173862	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	13122958	34367603	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	13122958	57516539	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	16810107	61810107	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	16810107	61810107	Rat
8552910	Pigfal5	Plasma insulin-like growth factor 1 level QTL 5	4.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	19417887	64417887	Rat
1641898	Colcr4	Colorectal carcinoma resistance QTL4	3.71	0.0007	intestine integrity trait (VT:0010554)	well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)	6	21515302	65784818	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	22042854	84763421	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	22042854	84763421	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	279
Count of miRNA genes:	186
Interacting mature miRNAs:	211
Transcripts:	ENSRNOT00000047853
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3				10
Low		10	8		9		6	6		13	5	11	6
Below cutoff		11	17	11		11	2	5	25	16	15		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_354597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07063257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AABR07063258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AABR07063259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01042194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01042195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01042196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC091250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000047853 ⟹ ENSRNOP00000039021

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	24,579,622 - 24,676,524 (-)	Ensembl

RefSeq Acc Id:

NM_001025133 ⟹ NP_001020304

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	24,579,590 - 24,676,418 (-)	NCBI
Rnor_5.0	6	34,429,074 - 34,525,225 (-)	NCBI
RGSC_v3.4	6	22,129,421 - 22,224,086 (+)	RGD
Celera	6	21,618,581 - 21,707,279 (+)	RGD

Sequence:

show sequence

GCTTCCTGCAGGGACACTGCCCCAGGGTGCTACCTTCAGAGGACACAGAAAGAAAGGACTTCAG
ACATTTTTCTAGAGCTAGTCATGGCACATGACACAGAGGCTCTAGAAGAAACCTCCGTGGTCAA
GTTCAAGAACCAGGACTTTAGATTCTTACGGGATCGTTGCCTGAGCAGGGGTCAGCTGTTTATA
GATGATACATTCCCTGCTGAGGCATCTTCCATTGGCCAGAAACTGCTCATGGGAAAGCGCCTTC
CAAAATTGGAGTGGAAGCGACCACAGGATTTATCCTTCGGCCCCCCTCACTTCATTCTGGAAGG
TGCAAGCAGATTTGACATCCAACAAGGAAGAGCGGGAGACTGCTGGTTCCTGGCAGCACTGGGT
TCTCTGACCCAGAACCCGCAGTGTCTGCAGAAGATCCTGATGAACCAAAGCTTTTCGTACCAGT
ACGCTGGGATTTTCCACTTCCGGTTCTGGCAGTGTGGTCAGTGGGTGGAAGTAGTCATCGATGA
CCGCTTGCCTGTCGTAGGCAACAACTTCTGCTTTGTGCATCCTCGCAGAGGCAACCAAGAATTC
TGGCCCTGCCTGATGGAGAAAGCCTATGCCAAGCTGCTAGGCTCATATTCCCAATTACACTATG
GCTACCTTCCTGATGCGCTGGTGGACCTCACAGGAGGAGTGGTCACCAGGATCAACCTGCACTC
CTCTCCCTCTGACCTATTGATGGTAGTGAAGACCGCAGTCCAGACAGGCTCAATGGTGGCCTGT
GCCACCCCAAAGTGGCTGACAGAAGAGTCCGAGGTTATGGAGAATGGGCTGGTGAGCCAGCATG
CATACACAGTGACTGGAGCTGAGAAGATTCAGTACCGGAGGGGCTGGGAAGAAATCATCCGCCT
TTGGAACCCCTGGGGCAACACAGAATGGAGAGGCCGCTGGGGAGATGGGTCCCAGGAGTGGTGG
GAAACCCATGGCTCACGGAAAAGCCAGCTGTACGAGAATAAGGATGACGGCGAGTTTTGGATGT
CCTGTCGAGATTTCCATGAGAACTTCTCGTGCCTGTACATATGTAGCCAGTTCCCGATCACTAT
GGATCCTGGAGTCACACCCAATGAGAGCTGGCGACAAATGAGGTTTAAGAACCAAGTGATCTCA
GGAAACACAGCAGGAGGAGATGGAAGGGATATACAGTACCTCTTTGACGTTCAAGAGCCCATGG
ATGGTAACAATGTCATTGTGGCTTTCACAGTCATGCCACAAAGCCTGAAGACAGAAGAGTGGCC
ATTTCCACTACAGTTCCAGGTGTTCAAGGTGGATTCCCAGTTCCAGAAGTTCCAGAAAAGACTG
CCACCTGCATTTTTCTCCCAATTCAGAGATGCTGCCCAGGGAATAGACTATGTAACCAAACGCA
ACTTCACAAAGTCCTTCCACCTGAGTCCTGGGACCTATGTAGTGGTTGCCTCAGCACACGGGAA
AGAAGTGGAGTTCCTGCTCCGAATATTCCTCAAAATGCCACACAAGGACAGGAATCCAAACAGC
AGTTTCAACCTCAAAGCCCTCAAGGGAAGTCTTTCAGAAAACGAATCCCCAAAAAGCAGTTTCC
ACAGATATATGGATCAGGGGCTAGACATTGATGCCAGCCAACTTCAGAGCCTTCTCAACCAGGA
GTACCTAACAGGGCCCCCAGGGGACACTTTCTCCTTGGACCAGTGCCAAAGCATCATGGCACTG
ATGGATCTGAAAGTGAATGGGCGGCTGGATCGGGAGGAGTTTGCAAGACTACAGAGTCGCCTGA
TCCACTGCCAGCATGTTTTCCAGCACATCCAGAGGAGCCAAGGAGTTCTCCGCAGCTCGGACTT
ATGGGAGGTCATAGAGAGTACAGACTTCCTTTCAGGAGTCCTCCTCAGCAAGGAGCTGCTGAGT
CTTATGACACTCAGGTACAGTGATAGCTCTGGCCGGCTCAGCTTTCCCAGTCTTGTCTGCTTCC
TGATACGGCTGGAAACCATGTCAAAGGCATTCCGCAACCTCTCCAAGGATGGCAAAAGCATCTA
CCTGACAGAAATGGAGTGGATGAAGCTGGTCATGTACAGCTAAAGTGTGAAATGCAGCAGAGCC
CTCTGGACCAGGACAAGCTCCTGGTGGTCACCCGAGGAAACGGCTTTCTCCGTGGAGTTGTACC
AACCCAATGGCAGGTCTGCAGCTAAACCTGGTATTTGAAATGGAGTCAAAGGCGCCTGTGAAGA
GCCTGAGTGGAGGTCTTAGCTGAGGCAGGCCCTGGGAAACCCAAGGTCATAGGTCACCAGAGCA
CTTTCTGACGTCAGTAGGCACTTGCAGGAAAACAAAACAGGAAGTGTCCACTCCCACTCCCGAG
AGGAAGCAGGAAGAAACTGGCATTCCATCCCCTCTCACACGATCAATCACTGGATCCATTTATT
GTGGAAAAAAAAAAAACAGTCTGATCCAGTTTATGCACCCCCGGGATTGGTCTAATCAGTGTCA
TTTGCCAAAAATCCACATGCTTTTGTATCTGCACCCAAGTTGTTTCACAGCTAAATGGCAAAAT
AAAATTTATTTCTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006239777 ⟹ XP_006239839

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	24,579,601 - 24,676,536 (-)	NCBI
Rnor_5.0	6	34,429,074 - 34,525,225 (-)	NCBI

Sequence:

show sequence

AGCAGGCAGAACCTTGTATTTATTCCCTCCAAAGGAGCAACACTCTCCCTCAGCCGTCCCCTCT
ACCTCTCTCCAGCCCTCAAGACTGCTTGGTAGTGCAGCTGCCTCATCGAAATAAGCTTCCTGCA
GGGACACTGCCCCAGGGTGCTACCTTCAGAGGACACAGGATTCACAAGTCGTGGCTGTCAGTTC
GTGTTCTTGCCTTCTAAAAAGAAAGGACTTCAGACATTTTTCTAGAGCTAGTCATGGCACATGA
CACAGAGGCTCTAGAAGAAACCTCCGTGGTCAAGTTCAAGAACCAGGACTTTAGATTCTTACGG
GATCGTTGCCTGAGCAGGGGTCAGCTGTTTATAGATGATACATTCCCTGCTGAGGCATCTTCCA
TTGGCCAGAAACTGCTCATGGGAAAGCGCCTTCCAAAATTGGAGTGGAAGCGACCACAGGATTT
ATCCTTCGGCCCCCCTCACTTCATTCTGGAAGGTGCAAGCAGATTTGACATCCAACAAGGAAGA
GCGGGAGACTGCTGGTTCCTGGCAGCACTGGGTTCTCTGACCCAGAACCCGCAGTGTCTGCAGA
AGATCCTGATGAACCAAAGCTTTTCGTACCAGTACGCTGGGATTTTCCACTTCCGGTTCTGGCA
GTGTGGTCAGTGGGTGGAAGTAGTCATCGATGACCGCTTGCCTGTCGTAGGCAACAACTTCTGC
TTTGTGCATCCTCGCAGAGGCAACCAAGAATTCTGGCCCTGCCTGATGGAGAAAGCCTATGCCA
AGCTGCTAGGCTCATATTCCCAATTACACTATGGCTACCTTCCTGATGCGCTGGTGGACCTCAC
AGGAGGAGTGGTCACCAGGATCAACCTGCACTCCTCTCCCTCTGACCTATTGATGGTAGTGAAG
ACCGCAGTCCAGACAGGCTCAATGGTGGCCTGTGCCACCCCAAAGTGGCTGACAGAAGAGTCCG
AGGTTATGGAGAATGGGCTGGTGAGCCAGCATGCATACACAGTGACTGGAGCTGAGAAGATTCA
GTACCGGAGGGGCTGGGAAGAAATCATCCGCCTTTGGAACCCCTGGGGCAACACAGAATGGAGA
GGCCGCTGGGGAGATGGGTCCCAGGAGTGGTGGGAAACCCATGGCTCACGGAAAAGCCAGCTGT
ACGAGAATAAGGATGACGGCGAGTTTTGGATGTCCTGTCGAGATTTCCATGAGAACTTCTCGTG
CCTGTACATATGTAGCCAGTTCCCGATCACTATGGATCCTGGAGTCACACCCAATGAGAGCTGG
CGACAAATGAGGTTTAAGAACCAAGTGATCTCAGGAAACACAGCAGGAGGAGATGGAAGGGATA
TACAGTACCTCTTTGACGTTCAAGAGCCCATGGATGGTAACAATGTCATTGTGGCTTTCACAGT
CATGCCACAAAGCCTGAAGACAGAAGAGTGGCCATTTCCACTACAGTTCCAGGTGTTCAAGGTG
GATTCCCAGTTCCAGAAGTTCCAGAAAAGACTGCCACCTGCATTTTTCTCCCAATTCAGAGATG
CTGCCCAGGGAATAGACTATGTAACCAAACGCAACTTCACAAAGTCCTTCCACCTGAGTCCTGG
GACCTATGTAGTGGTTGCCTCAGCACACGGGAAAGAAGTGGAGTTCCTGCTCCGAATATTCCTC
AAAATGCCACACAAGGACAGGAATCCAAACAGCAGTTTCAACCTCAAAGCCCTCAAGGGAAGTC
TTTCAGAAAACGAATCCCCAAAAAGCAGTTTCCACAGATATATGGATCAGGGGCTAGACATTGA
TGCCAGCCAACTTCAGAGCCTTCTCAACCAGGAGTACCTAACAGGGCCCCCAGGGGACACTTTC
TCCTTGGACCAGTGCCAAAGCATCATGGCACTGATGGATCTGAAAGTGAATGGGCGGCTGGATC
GGGAGGAGTTTGCAAGACTACAGAGTCGCCTGATCCACTGCCAGCATGTTTTCCAGCACATCCA
GAGGAGCCAAGGAGTTCTCCGCAGCTCGGACTTATGGGAGGTCATAGAGAGTACAGACTTCCTT
TCAGGAGTCCTCCTCAGCAAGGAGCTGCTGAGTCTTATGACACTCAGGTACAGTGATAGCTCTG
GCCGGCTCAGCTTTCCCAGTCTTGTCTGCTTCCTGATACGGCTGGAAACCATGTCAAAGGCATT
CCGCAACCTCTCCAAGGATGGCAAAAGCATCTACCTGACAGAAATGGAGTGGATGAAGCTGGTC
ATGTACAGCTAAAGTGTGAAATGCAGCAGAGCCCTCTGGACCAGGACAAGCTCCTGGTGGTCAC
CCGAGGAAACGGCTTTCTCCGTGGAGTTGTACCAACCCAATGGCAGGTCTGCAGCTAAACCTGG
TATTTGAAATGGAGTCAAAGGCGCCTGTGAAGAGCCTGAGTGGAGGTCTTAGCTGAGGCAGGCC
CTGGGAAACCCAAGGTCATAGGTCACCAGAGCACTTTCTGACGTCAGTAGGCACTTGCAGGAAA
ACAAAACAGGAAGTGTCCACTCCCACTCCCGAGAGGAAGCAGGAAGAAACTGGCATTCCATCCC
CTCTCACACGATCAATCACTGGATCCATTTATTGTGGAAAAAAAAAAAACAGTCTGATCCAGTT
TATGCACCCCCGGGATTGGTCTAATCAGTGTCATTTGCCAAAAATCCACATGCTTTTGTATCTG
CACCCAAGTTGTTTCACAGCTAAATGGCAAAATAAAATTTATTTCTACA

hide sequence

RefSeq Acc Id:

XM_006239778 ⟹ XP_006239840

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	24,579,601 - 24,676,536 (-)	NCBI
Rnor_5.0	6	34,429,074 - 34,525,225 (-)	NCBI

Sequence:

show sequence

AGCAGGCAGAACCTTGTATTTATTCCCTCCAAAGGAGCAACACTCTCCCTCAGCCGTCCCCTCT
ACCTCTCTCCAGCCCTCAAGACTGCTTGGTAGTGCAGCTGCCTCATCGAAATAAGCTTCCTGCA
GGGACACTGCCCCAGGGTGCTACCTTCAGAGGACACAGAAAGGACTTCAGACATTTTTCTAGAG
CTAGTCATGGCACATGACACAGAGGCTCTAGAAGAAACCTCCGTGGTCAAGTTCAAGAACCAGG
ACTTTAGATTCTTACGGGATCGTTGCCTGAGCAGGGGTCAGCTGTTTATAGATGATACATTCCC
TGCTGAGGCATCTTCCATTGGCCAGAAACTGCTCATGGGAAAGCGCCTTCCAAAATTGGAGTGG
AAGCGACCACAGGATTTATCCTTCGGCCCCCCTCACTTCATTCTGGAAGGTGCAAGCAGATTTG
ACATCCAACAAGGAAGAGCGGGAGACTGCTGGTTCCTGGCAGCACTGGGTTCTCTGACCCAGAA
CCCGCAGTGTCTGCAGAAGATCCTGATGAACCAAAGCTTTTCGTACCAGTACGCTGGGATTTTC
CACTTCCGGTTCTGGCAGTGTGGTCAGTGGGTGGAAGTAGTCATCGATGACCGCTTGCCTGTCG
TAGGCAACAACTTCTGCTTTGTGCATCCTCGCAGAGGCAACCAAGAATTCTGGCCCTGCCTGAT
GGAGAAAGCCTATGCCAAGCTGCTAGGCTCATATTCCCAATTACACTATGGCTACCTTCCTGAT
GCGCTGGTGGACCTCACAGGAGGAGTGGTCACCAGGATCAACCTGCACTCCTCTCCCTCTGACC
TATTGATGGTAGTGAAGACCGCAGTCCAGACAGGCTCAATGGTGGCCTGTGCCACCCCAAAGTG
GCTGACAGAAGAGTCCGAGGTTATGGAGAATGGGCTGGTGAGCCAGCATGCATACACAGTGACT
GGAGCTGAGAAGATTCAGTACCGGAGGGGCTGGGAAGAAATCATCCGCCTTTGGAACCCCTGGG
GCAACACAGAATGGAGAGGCCGCTGGGGAGATGGGTCCCAGGAGTGGTGGGAAACCCATGGCTC
ACGGAAAAGCCAGCTGTACGAGAATAAGGATGACGGCGAGTTTTGGATGTCCTGTCGAGATTTC
CATGAGAACTTCTCGTGCCTGTACATATGTAGCCAGTTCCCGATCACTATGGATCCTGGAGTCA
CACCCAATGAGAGCTGGCGACAAATGAGGTTTAAGAACCAAGTGATCTCAGGAAACACAGCAGG
AGGAGATGGAAGGGATATACAGTACCTCTTTGACGTTCAAGAGCCCATGGATGGTAACAATGTC
ATTGTGGCTTTCACAGTCATGCCACAAAGCCTGAAGACAGAAGAGTGGCCATTTCCACTACAGT
TCCAGGTGTTCAAGGTGGATTCCCAGTTCCAGAAGTTCCAGAAAAGACTGCCACCTGCATTTTT
CTCCCAATTCAGAGATGCTGCCCAGGGAATAGACTATGTAACCAAACGCAACTTCACAAAGTCC
TTCCACCTGAGTCCTGGGACCTATGTAGTGGTTGCCTCAGCACACGGGAAAGAAGTGGAGTTCC
TGCTCCGAATATTCCTCAAAATGCCACACAAGGACAGGAATCCAAACAGCAGTTTCAACCTCAA
AGCCCTCAAGGGAAGTCTTTCAGAAAACGAATCCCCAAAAAGCAGTTTCCACAGATATATGGAT
CAGGGGCTAGACATTGATGCCAGCCAACTTCAGAGCCTTCTCAACCAGGAGTACCTAACAGGGC
CCCCAGGGGACACTTTCTCCTTGGACCAGTGCCAAAGCATCATGGCACTGATGGATCTGAAAGT
GAATGGGCGGCTGGATCGGGAGGAGTTTGCAAGACTACAGAGTCGCCTGATCCACTGCCAGCAT
GTTTTCCAGCACATCCAGAGGAGCCAAGGAGTTCTCCGCAGCTCGGACTTATGGGAGGTCATAG
AGAGTACAGACTTCCTTTCAGGAGTCCTCCTCAGCAAGGAGCTGCTGAGTCTTATGACACTCAG
GTACAGTGATAGCTCTGGCCGGCTCAGCTTTCCCAGTCTTGTCTGCTTCCTGATACGGCTGGAA
ACCATGTCAAAGGCATTCCGCAACCTCTCCAAGGATGGCAAAAGCATCTACCTGACAGAAATGG
AGTGGATGAAGCTGGTCATGTACAGCTAAAGTGTGAAATGCAGCAGAGCCCTCTGGACCAGGAC
AAGCTCCTGGTGGTCACCCGAGGAAACGGCTTTCTCCGTGGAGTTGTACCAACCCAATGGCAGG
TCTGCAGCTAAACCTGGTATTTGAAATGGAGTCAAAGGCGCCTGTGAAGAGCCTGAGTGGAGGT
CTTAGCTGAGGCAGGCCCTGGGAAACCCAAGGTCATAGGTCACCAGAGCACTTTCTGACGTCAG
TAGGCACTTGCAGGAAAACAAAACAGGAAGTGTCCACTCCCACTCCCGAGAGGAAGCAGGAAGA
AACTGGCATTCCATCCCCTCTCACACGATCAATCACTGGATCCATTTATTGTGGAAAAAAAAAA
AACAGTCTGATCCAGTTTATGCACCCCCGGGATTGGTCTAATCAGTGTCATTTGCCAAAAATCC
ACATGCTTTTGTATCTGCACCCAAGTTGTTTCACAGCTAAATGGCAAAATAAAATTTATTTCTA
CA

hide sequence

RefSeq Acc Id:

XR_354597

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	24,595,641 - 24,676,536 (-)	NCBI
Rnor_5.0	6	34,429,074 - 34,525,225 (-)	NCBI

Sequence:

show sequence

AGCAGGCAGAACCTTGTATTTATTCCCTCCAAAGGAGCAACACTCTCCCTCAGCCGTCCCCTCT
ACCTCTCTCCAGCCCTCAAGACTGCTTGGTAGTGCAGCTGCCTCATCGAAATAAGCTTCCTGCA
GGGACACTGCCCCAGGGTGCTACCTTCAGAGGACACAGAAAGAAAGGACTTCAGACATTTTTCT
AGAGCTAGTCATGGCACATGACACAGAGGCTCTAGAAGAAACCTCCGTGGTCAAGTTCAAGAAC
CAGGACTTTAGATTCTTACGGGATCGTTGCCTGAGCAGGGGTCAGCTGTTTATAGATGATACAT
TCCCTGCTGAGGCATCTTCCATTGGCCAGAAACTGCTCATGGGAAAGCGCCTTCCAAAATTGGA
GTGGAAGCGACCACAGGATTTATCCTTCGGCCCCCCTCACTTCATTCTGGAAGGTGCAAGCAGA
TTTGACATCCAACAAGGAAGAGCGGGAGACTGCTGGTTCCTGGCAGCACTGGGTTCTCTGACCC
AGAACCCGCAGTGTCTGCAGAAGATCCTGATGAACCAAAGCTTTTCGTACCAGTACGCTGGGAT
TTTCCACTTCCGGTTCTGGCAGTGTGGTCAGTGGGTGGAAGTAGTCATCGATGACCGCTTGCCT
GTCGTAGGCAACAACTTCTGCTTTGTGCATCCTCGCAGAGGCAACCAAGAATTCTGGCCCTGCC
TGATGGAGAAAGCCTATGCCAAGCTGCTAGGCTCATATTCCCAATTACACTATGGCTACCTTCC
TGATGCGCTGGTGGACCTCACAGGAGGAGTGGTCACCAGGATCAACCTGCACTCCTCTCCCTCT
GACCTATTGATGGTAGTGAAGACCGCAGTCCAGACAGGCTCAATGGTGGCCTGTGCCACCCCAA
AGTGGCTGACAGAAGAGTCCGAGGTTATGGAGAATGGGCTGGTGAGCCAGCATGCATACACAGT
GACTGGAGCTGAGAAGATTCAGTACCGGAGGGGCTGGGAAGAAATCATCCGCCTTTGGAACCCC
TGGGGCAACACAGAATGGAGAGGCCGCTGGGGAGATGGGTCCCAGGAGTGGTGGGAAACCCATG
GCTCACGGAAAAGCCAGCTGTACGAGAATAAGGATGACGGCGAGTTTTGGATGTCCTGTCGAGA
TTTCCATGAGAACTTCTCGTGCCTGTACATATGTAGCCAGTTCCCGATCACTATGGATCCTGGA
GTCACACCCAATGAGAGCTGGCGACAAATGAGGTTTAAGAACCAAGTGATCTCAGGAAACACAG
CAGGAGGAGATGGAAGGGATATACAGTACCTCTTTGACGTTCAAGAGCCCATGGATGGTAACAA
TGTCATTGTGGCTTTCACAGTCATGCCACAAAGCCTGAAGACAGAAGAGTGGCCATTTCCACTA
CAGTTCCAGGTGTTCAAGGTGGATTCCCAGTTCCAGAAGTTCCAGAAAAGACTGCCACCTGCAT
TTTTCTCCCAATTCAGAGATGCTGCCCAGGGAATAGACTATGTAACCAAACGCAACTTCACAAA
GTCCTTCCACCTGAGTCCTGGGACCTATGTAGTGGTTGCCTCAGCACACGGGAAAGAAGTGGAG
TTCCTGCTCCGAATATTCCTCAAAATGCCACACAAGGACAGGAATCCAAACAGCAGTTTCAACC
TCAAAGCCCTCAAGGGAAGTCTTTCAGAAAACGAATCCCCAAAAAGCAGTTTCCACAGATATAT
GGATCAGGGGCTAGACATTGATGCCAGCCAACTTCAGAGCCTTCTCAACCAGGAGTACCTAACA
GGGCCCCCAGGGGACACTTTCTCCTTGGACCAGTGCCAAAGCATCATGGCACTGATGGATGTAT
CCTTTGTAATCACCCTCTCCTACAGCCCTAGAAACCCCCCAACCCCTGTGGGCTTCCCTGGGAT
TTGAATTATATACCAGTTCACTCCGGAATCGCGCTTATCATTGTAGCCATAGTATTAGTCACTA
CTCACTGGGAATCATAACGAAGTGTATTTGCAATGCTTACAACAGCCCAGCAACTGCTGTTATC
CCATTGAACCACGGAAGACCCAGGGGCAGCAGAGGTGAAGTATTTTCACCCAGCTTACACTGCT
AGTTGGGGGCTATGCATGGGTTTGAAATAGAAGTCTAAGCCTCCAAGTTCCACATTCTAACCTC
AACCTATGCTACCTTCTCCAGTCGGAGCAATTTTCCCTTCACCCTTTCCTTCAACACTGAGGTA
ATCTTCACTGCTGGGATTCCTTATTCAAAGGACTCTTAATTTTAAAAGCTAACCACAGAGAACT
CAAAAGCCTTCTTGGTCTGCAGTGCACAGTAGTGGAACCCCTTTTGGCTCACATGGCATTTTTA
TACCTCTAGGCAATGGTCTTGAGACAATTCAGTGGCTAGCCTAGTTTCATGGACATAAGGAACA
GGACCAAAAATCAAACTTTCATTGCTTTTGCTCTCATATCAACACCCTCTCTCCTAGGAGCCTC
CTTCTTCTATCTGACCTCTCTCCCTCCGGGCAGGAGAAACACTGGCCACATAGGAGGGATCCCA
AGCCTGGCAGCTCCTTCTCGGGCTGTAGCTGTCTCCAGAGAGAGACAGATCACCCCTCTTTCAC
ACGGTTAACAAGGCTCGATTGTGAATTCGAAGCCAGCCATTGTAGAACAAGAAGGCTTCTTGAT
GGAATCATAAATCAGCCCTGTCTCAGCTGGCTGTGGCCTGGAGTCACTTGAAGACACAGAAGAA
TCCAAATGGCCCTTGCAGCCATGTGGCCGGGCACCCAACTGAGGAGGAGGAGAAAGAGGTCACC
TTCAGATAGAGTGGGAGCCAGCTGGCAAGGGGCCAACATGGCACTGGGTTACCAGCTGAAGGCT
GAAGCTGCTCTGGCTTCATTAGCAGGACAAACAGCTCCCCTTCCCATTGCCCCCTGGACTGCTT
TGCTCTTAACTTGTCCTCCAGCTGAAAGTGAATGGGCGGCTGGATCGGGAGGAGTTTGCAAGAC
TACAGAGTCGCCTGATCCACTGCCAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001020304	(Get FASTA)	NCBI Sequence Viewer
	XP_006239839	(Get FASTA)	NCBI Sequence Viewer
	XP_006239840	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91250	(Get FASTA)	NCBI Sequence Viewer
	Q5BK10	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001020304 ⟸ NM_001025133

- UniProtKB:

Q5BK10 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAHDTEALEETSVVKFKNQDFRFLRDRCLSRGQLFIDDTFPAEASSIGQKLLMGKRLPKLEWKR
PQDLSFGPPHFILEGASRFDIQQGRAGDCWFLAALGSLTQNPQCLQKILMNQSFSYQYAGIFHF
RFWQCGQWVEVVIDDRLPVVGNNFCFVHPRRGNQEFWPCLMEKAYAKLLGSYSQLHYGYLPDAL
VDLTGGVVTRINLHSSPSDLLMVVKTAVQTGSMVACATPKWLTEESEVMENGLVSQHAYTVTGA
EKIQYRRGWEEIIRLWNPWGNTEWRGRWGDGSQEWWETHGSRKSQLYENKDDGEFWMSCRDFHE
NFSCLYICSQFPITMDPGVTPNESWRQMRFKNQVISGNTAGGDGRDIQYLFDVQEPMDGNNVIV
AFTVMPQSLKTEEWPFPLQFQVFKVDSQFQKFQKRLPPAFFSQFRDAAQGIDYVTKRNFTKSFH
LSPGTYVVVASAHGKEVEFLLRIFLKMPHKDRNPNSSFNLKALKGSLSENESPKSSFHRYMDQG
LDIDASQLQSLLNQEYLTGPPGDTFSLDQCQSIMALMDLKVNGRLDREEFARLQSRLIHCQHVF
QHIQRSQGVLRSSDLWEVIESTDFLSGVLLSKELLSLMTLRYSDSSGRLSFPSLVCFLIRLETM
SKAFRNLSKDGKSIYLTEMEWMKLVMYS

hide sequence

RefSeq Acc Id:	XP_006239840 ⟸ XM_006239778
- Peptide Label:	isoform X1
- UniProtKB:	Q5BK10 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAHDTEALEETSVVKFKNQDFRFLRDRCLSRGQLFIDDTFPAEASSIGQKLLMGKRLPKLEWKR PQDLSFGPPHFILEGASRFDIQQGRAGDCWFLAALGSLTQNPQCLQKILMNQSFSYQYAGIFHF RFWQCGQWVEVVIDDRLPVVGNNFCFVHPRRGNQEFWPCLMEKAYAKLLGSYSQLHYGYLPDAL VDLTGGVVTRINLHSSPSDLLMVVKTAVQTGSMVACATPKWLTEESEVMENGLVSQHAYTVTGA EKIQYRRGWEEIIRLWNPWGNTEWRGRWGDGSQEWWETHGSRKSQLYENKDDGEFWMSCRDFHE NFSCLYICSQFPITMDPGVTPNESWRQMRFKNQVISGNTAGGDGRDIQYLFDVQEPMDGNNVIV AFTVMPQSLKTEEWPFPLQFQVFKVDSQFQKFQKRLPPAFFSQFRDAAQGIDYVTKRNFTKSFH LSPGTYVVVASAHGKEVEFLLRIFLKMPHKDRNPNSSFNLKALKGSLSENESPKSSFHRYMDQG LDIDASQLQSLLNQEYLTGPPGDTFSLDQCQSIMALMDLKVNGRLDREEFARLQSRLIHCQHVF QHIQRSQGVLRSSDLWEVIESTDFLSGVLLSKELLSLMTLRYSDSSGRLSFPSLVCFLIRLETM SKAFRNLSKDGKSIYLTEMEWMKLVMYS hide sequence

RefSeq Acc Id:	XP_006239839 ⟸ XM_006239777
- Peptide Label:	isoform X1
- UniProtKB:	Q5BK10 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAHDTEALEETSVVKFKNQDFRFLRDRCLSRGQLFIDDTFPAEASSIGQKLLMGKRLPKLEWKR PQDLSFGPPHFILEGASRFDIQQGRAGDCWFLAALGSLTQNPQCLQKILMNQSFSYQYAGIFHF RFWQCGQWVEVVIDDRLPVVGNNFCFVHPRRGNQEFWPCLMEKAYAKLLGSYSQLHYGYLPDAL VDLTGGVVTRINLHSSPSDLLMVVKTAVQTGSMVACATPKWLTEESEVMENGLVSQHAYTVTGA EKIQYRRGWEEIIRLWNPWGNTEWRGRWGDGSQEWWETHGSRKSQLYENKDDGEFWMSCRDFHE NFSCLYICSQFPITMDPGVTPNESWRQMRFKNQVISGNTAGGDGRDIQYLFDVQEPMDGNNVIV AFTVMPQSLKTEEWPFPLQFQVFKVDSQFQKFQKRLPPAFFSQFRDAAQGIDYVTKRNFTKSFH LSPGTYVVVASAHGKEVEFLLRIFLKMPHKDRNPNSSFNLKALKGSLSENESPKSSFHRYMDQG LDIDASQLQSLLNQEYLTGPPGDTFSLDQCQSIMALMDLKVNGRLDREEFARLQSRLIHCQHVF QHIQRSQGVLRSSDLWEVIESTDFLSGVLLSKELLSLMTLRYSDSSGRLSFPSLVCFLIRLETM SKAFRNLSKDGKSIYLTEMEWMKLVMYS hide sequence

RefSeq Acc Id:

ENSRNOP00000039021 ⟸ ENSRNOT00000047853

Protein Domains

Calpain catalytic EF-hand

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694423

Promoter ID:

EPDNEW_R4948

Type:

multiple initiation site

Name:

Capn13_1

Description:

calpain 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	24,676,533 - 24,676,593	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562682	AgrOrtholog
Ensembl Genes	ENSRNOG00000032375	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000039021	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000047853	ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7368359	IMAGE-MGC_LOAD
InterPro	Calpain_cysteine_protease	UniProtKB/Swiss-Prot
	Calpain_domain_III	UniProtKB/Swiss-Prot
	Calpain_III	UniProtKB/Swiss-Prot
	Calpain_III_sf	UniProtKB/Swiss-Prot
	CANP13	UniProtKB/Swiss-Prot
	EF-hand-dom_pair	UniProtKB/Swiss-Prot
	EF_hand_dom	UniProtKB/Swiss-Prot
	Papain-like_cys_pep_sf	UniProtKB/Swiss-Prot
	Pept_cys_AS	UniProtKB/Swiss-Prot
	Peptidase_C2_calpain_cat	UniProtKB/Swiss-Prot
KEGG Report	rno:362701	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109045	IMAGE-MGC_LOAD
NCBI Gene	362701	ENTREZGENE
PANTHER	PTHR10183:SF333	UniProtKB/Swiss-Prot
Pfam	Calpain_III	UniProtKB/Swiss-Prot
	Peptidase_C2	UniProtKB/Swiss-Prot
PhenoGen	Capn13	PhenoGen
PRINTS	CALPAIN	UniProtKB/Swiss-Prot
PROSITE	CALPAIN_CAT	UniProtKB/Swiss-Prot
	EF_HAND_2	UniProtKB/Swiss-Prot
	THIOL_PROTEASE_CYS	UniProtKB/Swiss-Prot
SMART	calpain_III	UniProtKB/Swiss-Prot
	CysPc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot
	SSF49758	UniProtKB/Swiss-Prot
	SSF54001	UniProtKB/Swiss-Prot
UniProt	CAN13_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-02-09	Capn13	calpain 13			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)