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Gene: Capn13 (calpain 13) Rattus norvegicus
Analyze
Symbol: Capn13
Name: calpain 13
Description: Predicted to have calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to localize to the cytoplasm. Orthologous to human CAPN13 (calpain 13); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: calcium-activated neutral proteinase 13; calpain-13; CANP 13; MGC109045
Orthologs:
Homo sapiens (human) : CAPN13 (calpain 13)  HGNC  Alliance
Mus musculus (house mouse) : Capn13 (calpain 13)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Capn13 (calpain 13)
Pan paniscus (bonobo/pygmy chimpanzee) : CAPN13 (calpain 13)
Canis lupus familiaris (dog) : CAPN13 (calpain 13)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Capn13 (calpain 13)
Sus scrofa (pig) : CAPN13 (calpain 13)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0624,579,590 - 24,676,536 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0634,429,074 - 34,525,225 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4622,129,421 - 22,224,086 (+)NCBIRGSC3.4rn4RGSC3.4
Celera621,618,581 - 21,707,279 (+)NCBICelera
Cytogenetic Map6q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model

Annotation    (Toggle Annotation Detail/Summary View)

Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
  
More on Capn13
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1562682
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.