Cenpa (centromere protein A) - Rat Genome Database

Name: Cenpa
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cenpa (centromere protein A) Rattus norvegicus

Analyze

Symbol:

Cenpa

Name:

centromere protein A

RGD ID:

1563607

Description:

Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be involved in several processes, including centromere complex assembly; establishment of mitotic spindle orientation; and protein localization to chromosome, centromeric region. Predicted to be located in chromosome, centromeric region and nucleoplasm. Predicted to be part of CENP-A containing nucleosome and inner kinetochore. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autoimmune disease. Orthologous to human CENPA (centromere protein A); INTERACTS WITH 1,2-dimethylhydrazine; 1-naphthyl isothiocyanate; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

histone H3-like centromeric protein A; LOC298850; RGD1563607; similar to centromere protein A

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CENPA (centromere protein A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cenpa (centromere protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cenpa (centromere protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CENPA (centromere protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CENPA (centromere protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cenpa (centromere protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CENPA (centromere protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CENPA (centromere protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cenpa (centromere protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CENPA (centromere protein A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cenpa (centromere protein A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	cid	Alliance	DIOPT (OMA\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	25,700,142 - 25,711,767 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	25,700,142 - 25,711,675 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	26,004,502 - 26,011,743 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	6	26,320,374 - 26,327,620 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	6	25,800,027 - 25,807,259 (-)	NCBI	Rnor_WKY
Rnor_6.0	6	27,072,259 - 27,080,863 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	27,072,166 - 27,080,856 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	36,887,831 - 36,896,429 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	25,686,603 - 25,693,840 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	25,193,302 - 25,201,670 (-)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune disease (ISO)

hepatocellular carcinoma (ISO)

lung non-small cell carcinoma (ISO)

short-rib thoracic dysplasia 10 with or without polydactyly (ISO)

Tatton-Brown-Rahman syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (EXP)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

5-azacytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

afimoxifene (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

arsenite(3-) (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

butan-1-ol (ISO)

cadmium atom (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

cypermethrin (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

Enterolactone (ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

hydroquinone (ISO)

Indeno[1,2,3-cd]pyrene (ISO)

indometacin (ISO)

isobutanol (ISO)

isoprenaline (ISO)

L-methionine (ISO)

leflunomide (ISO)

lidocaine (EXP)

lucanthone (ISO)

menadione (ISO)

methyl methanesulfonate (ISO)

methylseleninic acid (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

N-methyl-N-nitrosourea (ISO)

N-nitrosodiethylamine (ISO)

N-Nitrosopyrrolidine (ISO)

niclosamide (ISO)

O-methyleugenol (ISO)

ozone (ISO)

palbociclib (ISO)

paracetamol (EXP,ISO)

parathion (ISO)

perfluorononanoic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

potassium chromate (ISO)

progesterone (ISO)

propanal (ISO)

quercetin (ISO)

raloxifene (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (EXP,ISO)

tetrachloromethane (ISO)

thalidomide (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vincaleukoblastine (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CENP-A containing chromatin assembly (ISO)

establishment of mitotic spindle orientation (ISO)

kinetochore assembly (ISO)

mitotic cytokinesis (ISO)

protein localization to chromosome, centromeric region (ISO)

Cellular Component

CENP-A containing chromatin (ISO)

CENP-A containing nucleosome (ISO)

chromosome, centromeric region (ISO)

condensed chromosome, centromeric region (ISO)

kinetochore (ISO)

nucleoplasm (IEA,ISO)

nucleosome (ISO)

nucleus (IBA,ISO)

pericentric heterochromatin (ISO)

Molecular Function

DNA binding (IEA)

protein binding (ISO)

protein heterodimerization activity (IEA)

structural constituent of chromatin (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Hepatitis B virus X protein mutant upregulates CENP-A expression in hepatoma cells.	Liu L, etal., Oncol Rep. 2012 Jan;27(1):168-73. doi: 10.3892/or.2011.1478. Epub 2011 Sep 28.
3.	Autoepitopes on autoantigen centromere protein-A (CENP-A) are restricted to the N-terminal region, which has no homology with histone H3.	Muro Y, etal., Clin Exp Immunol. 2000 Apr;120(1):218-23. doi: 10.1046/j.1365-2249.2000.01189.x.
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11084331	PMID:11682612	PMID:12477932	PMID:14519686	PMID:15242786	PMID:18195732	PMID:19468067	PMID:21630459	PMID:22516971	PMID:27499292

Genomics

Comparative Map Data

Cenpa
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	25,700,142 - 25,711,767 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	25,700,142 - 25,711,675 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	26,004,502 - 26,011,743 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	6	26,320,374 - 26,327,620 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	6	25,800,027 - 25,807,259 (-)	NCBI	Rnor_WKY
Rnor_6.0	6	27,072,259 - 27,080,863 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	27,072,166 - 27,080,856 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	36,887,831 - 36,896,429 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	25,686,603 - 25,693,840 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	25,193,302 - 25,201,670 (-)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

CENPA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	26,786,056 - 26,794,589 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	26,764,289 - 26,801,067 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	27,008,924 - 27,017,457 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	26,862,386 - 26,870,961 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	26,920,571 - 26,929,105	NCBI
Celera	2	26,854,943 - 26,863,518 (+)	NCBI		Celera
Cytogenetic Map	2	p23.3	NCBI
HuRef	2	26,750,612 - 26,759,190 (+)	NCBI		HuRef
CHM1_1	2	26,938,614 - 26,947,189 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	26,827,645 - 26,836,182 (+)	NCBI		T2T-CHM13v2.0

Cenpa
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	30,824,214 - 30,832,181 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	30,824,121 - 30,832,174 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	30,666,877 - 30,674,837 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	30,666,777 - 30,674,830 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	30,969,275 - 30,977,199 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	30,943,483 - 30,951,407 (+)	NCBI		MGSCv36	mm8
Celera	5	28,145,648 - 28,153,572 (+)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI
cM Map	5	16.76	NCBI

Cenpa
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	8,799,071 - 8,819,876 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955469	8,799,312 - 8,819,637 (+)	NCBI	ChiLan1.0	ChiLan1.0

CENPA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Mhudiblu_PPA_v0	2A	26,785,301 - 26,800,178 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

CENPA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	20,808,320 - 20,833,747 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	20,811,663 - 20,819,568 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	20,705,452 - 20,727,630 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	21,132,793 - 21,155,222 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	21,132,865 - 21,141,662 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	20,819,646 - 20,841,970 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	20,831,002 - 20,853,359 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	20,877,019 - 20,899,384 (+)	NCBI		UU_Cfam_GSD_1.0

Cenpa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	65,118,691 - 65,128,436 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	5,714,782 - 5,720,837 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936493	5,715,274 - 5,720,816 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CENPA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	112,263,915 - 112,272,621 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	112,263,912 - 112,272,638 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	119,263,793 - 119,272,512 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CENPA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	80,838,049 - 80,847,609 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	80,839,335 - 80,846,608 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	31,298,072 - 31,307,015 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cenpa
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	8,899,362 - 8,906,373 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	8,899,260 - 8,906,379 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cenpa
48 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	375
Count of miRNA genes:	218
Interacting mature miRNAs:	253
Transcripts:	ENSRNOT00000012512
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	27574569	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	27574569	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	27574569	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	27574569	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	27574569	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	34235784	Rat
1578758	Tcas9	Tongue tumor susceptibility QTL 9	3.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	6	1	37618905	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	39036266	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	41223769	Rat
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	41223769	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	41223769	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	41223769	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	41223769	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	42487980	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	42487980	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	42487980	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42838846	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	43394190	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	72227641	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	34434305	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	54641141	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	11735669	72593685	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	11735669	72593685	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	14368788	59368788	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	14368788	59368788	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	15107216	107351382	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	16536140	27261739	Rat
2292589	Emca10	Estrogen-induced mammary cancer QTL 10		0.048	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	16536140	61536140	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	16536140	71636405	Rat
1641898	Colcr4	Colorectal carcinoma resistance QTL4	3.71	0.0007	intestine integrity trait (VT:0010554)	well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)	6	20338777	62613667	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	20866422	81133036	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	20866422	81133036	Rat

Markers in Region

RH143311

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	25,704,671 - 25,704,777 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	28,306,143 - 28,306,248	NCBI	Rnor6.0
Rnor_6.0	6	27,073,542 - 27,073,647	NCBI	Rnor6.0
Rnor_5.0	6	38,115,420 - 38,115,525	UniSTS	Rnor5.0
Rnor_5.0	6	36,889,111 - 36,889,216	UniSTS	Rnor5.0
RGSC_v3.4	6	25,686,883 - 25,686,988	UniSTS	RGSC3.4
Celera	6	25,194,585 - 25,194,690	UniSTS
RH 3.4 Map	6	116.2	UniSTS
Cytogenetic Map	6	q14	UniSTS

AI045252

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	25,704,597 - 25,704,746 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	28,306,069 - 28,306,217	NCBI	Rnor6.0
Rnor_6.0	6	27,073,468 - 27,073,616	NCBI	Rnor6.0
Rnor_5.0	6	38,115,346 - 38,115,494	UniSTS	Rnor5.0
Rnor_5.0	6	36,889,037 - 36,889,185	UniSTS	Rnor5.0
RGSC_v3.4	6	25,686,809 - 25,686,957	UniSTS	RGSC3.4
Celera	6	25,194,511 - 25,194,659	UniSTS
RH 3.4 Map	6	116.5	UniSTS
Cytogenetic Map	6	q14	UniSTS

RH141436

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	25,704,880 - 25,705,030 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	28,306,352 - 28,306,501	NCBI	Rnor6.0
Rnor_6.0	6	27,073,751 - 27,073,900	NCBI	Rnor6.0
Rnor_5.0	6	38,115,629 - 38,115,778	UniSTS	Rnor5.0
Rnor_5.0	6	36,889,320 - 36,889,469	UniSTS	Rnor5.0
RGSC_v3.4	6	25,687,092 - 25,687,241	UniSTS	RGSC3.4
Celera	6	25,194,794 - 25,194,943	UniSTS
RH 3.4 Map	6	96.2	UniSTS
Cytogenetic Map	6	q14	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	26	28	22	10	22			32	18	27
Low	1	12	25	19	9	19	3	3	25	11	14	11	3
Below cutoff		5	4				4	7	16	6			4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000012512 ⟹ ENSRNOP00000012512

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	25,700,142 - 25,711,675 (-)	Ensembl
Rnor_6.0 Ensembl	6	27,072,166 - 27,080,856 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117984 ⟹ ENSRNOP00000083188

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	25,700,142 - 25,711,622 (-)	Ensembl

RefSeq Acc Id:

NM_001106711 ⟹ NP_001100181

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	25,704,392 - 25,711,638 (-)	NCBI
Rnor_6.0	6	27,073,262 - 27,080,738 (-)	NCBI
Rnor_5.0	6	36,887,831 - 36,896,429 (-)	NCBI
RGSC_v3.4	6	25,686,603 - 25,693,840 (-)	RGD

Sequence:

show sequence

ACCCTCGCGTCCAGCCATGGTCGGGCGCCGCAAGCCAGGGACCCCGAGGAGGCGACCCTCTAGT
CCGGCGCCCGGACCCTCTCAGCCAGCCACGGACTCGCGTCGCCAGTCGAGGACTCCGACGAGGC
GGCCCTCCAGTCCGGCGCCCGGACCCTCGCGACGGAGCTCCGGAGTAGGCCCTCAGGCACTACA
CAGAAGACGGAGATTCCTGTGGCTTAAGGAAATAAAGAACCTGCAAAAGAGCACAGACCTCTTG
TTTAGGAAGAAGCCTTTCGGCCTCGTGGTAAGAGAAATATGTGGGAAATTCAGCCGTGGTGTGG
ATTTATATTGGCAAGCTCAGGCCTTGTTGGCCCTTCAAGAGGCAGCAGAAGCGTTTCTCGTTCA
CCTCTTTGAGGACGCCTATCTCCTCTCCTTACATGCTGGCCGAGTCACGCTTTTCCCCAAAGAT
GTGCAGCTAGCCAGGAGGATCCGAGGCATTGAGGGAGGACTCGGCTGAGCTGCCAGTGCGATGT
ACAATACCTGGAATCTTTTGGAGCTGCAGCCAAACAGCAGTGTCTGAGGCACTGCCTGGATATT
GCTGGTTTTGAGCAGTGGCTACACGATGCCCTTTAAGATTGTGGCTTTTGCCTGTGACAGAGGA
AGAAGAGGCCATCTGCCTCGCCCATGGACACGAATGAGTGTTTGCAGACCAAAGGTCAACTTGG
TTTGTGAATTGCTCAACCACATTACTGTTTGCGGGTTTCAGACCCATGAGGTCTGCCATGTTAT
GAGGGGTATTGATATTTTATTCTTCCTGTACCATGTGCATCTTTTATCCTGTGTCTTTGTACTT
TTTAAATATAAGGGAGAAGTTTTTGAGTAAAATGTTAGAATCTGTTGTATGGAAAGCCCTGGCA
GTCCCGCCCGCCATACAAATGTCTGCCTTCCAGATTGCCCTCACGCTGCCTGTCAGCAAACATG
GAGCTTTTCAAAACTTAAGTAGCGTTACATACACAGTCTTCTCTTCCTTCCCTTCAAGGCTGGG
ACTTGAATCCAATGTCTTATACATGCCAAACATGGACTGTAATGTTGAACTGCATCCACAGCCT
GAAATATATAGTCTTTCTGGTTCCTACCAGTAAATTCCTATGGAAACCATCCAGAAAGTCTCTC
TTAGAAGTAGACAGTTTATCCTTAGCTGTAAATCACATACAATGTATCATACCAGTTTTGGGAT
TTTACAACATGTTTTCCGTATTTTTTACAGGTTATCTTTAGTTTATTTGAGGAGAAATAATAAA
AAAATAATTTCTTAGTGAGA

hide sequence

RefSeq Acc Id:

XM_006239798 ⟹ XP_006239860

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	25,700,333 - 25,711,765 (-)	NCBI
Rnor_6.0	6	27,072,259 - 27,080,861 (-)	NCBI
Rnor_5.0	6	36,887,831 - 36,896,429 (-)	NCBI

Sequence:

show sequence

TCTGATTTTTGAACTACTGGCGGCGGAGATCCGGCGTCCCTGACTCGGGCACGGTAGGCTTGCT
GTCGAGTTCCGTTTTGGCCGCAGGACCCGGAAGGCTTAGGAGGAGTCGGCTGAGCCCGGACCCT
CGCGTCCAGCCATGGTCGGGCGCCGCAAGCCAGGGACCCCGAGGAGGCGACCCTCTAGTCCGGC
GCCCGGACCCTCTCAGCCAGCCACGGACTCGCGTCGCCAGTCGAGGACTCCGACGAGGCGGCCC
TCCAGTCCGGCGCCCGGACCCTCGCGACGGAGCTCCGGAGTAGGCCCTCAGGCACTACACAGAA
GACGGAGATTCCTGTGGCTTAAGGAAATAAAGAACCTGCAAAAGAGCACAGACCTCTTGTTTAG
GAAGAAGCCTTTCGGCCTCGTGGTAAGAGAAATATGTGGGAAATTCAGCCGTGGTGTGGATTTA
TATTGGCAAGCTCAGGCCTTGTTGGCCCTTCAAGAGGCAGCAGAAGCGTTTCTCGTTCACCTCT
TTGAGGACGCCTATCTCCTCTCCTTACATGCTGGCCGAGTCACGCTTTTCCCCAAAGATGTGCA
GCTAGCCAGGAGGATCCGAGGCATTGAGGGAGGACTCGGCTGAGCTGCCAGTGCGATGTGTCCA
GACAATACCTGGAATCTTTTGGAGCTGCAGCCAAACAGCAGTGTCTGAGGCACTGCCTGGATAT
TGCTGGTTTTGAGCAGTGGCTACACGATGCCCTTTAAGATTGTGGCTTTTGCCTGTGACAGAGG
AAGAAGAGGCCATCTGCCTCGCCCATGGACACGAATGAGTGTTTGCAGACCAAAGGTCAACTTG
GTTTGTGAATTGCTCAACCACATTACTGTTTGCGGGTTTCAGACCCATGAGGTCTGCCATGTTA
TGAGGGGTATTGATATTTTATTCTTCCTGTACCATGTGCATCTTTTATCCTGTGTCTTTGTACT
TTTTAAATATAAGGGAGAAGTTTTTGAGTAAAATGTTAGAATCTGTTGTATGGAAAGCCCTGGC
AGTCCCGCCCGCCATACAAATGTCTGCCTTCCAGATTGCCCTCACGCTGCCTGTCAGCAAACAT
GGAGCTTTTCAAAACTTAAGTAGCGTTACATACACAGTCTTCTCTTCCTTCCCTTCAAGGCTGG
GACTTGAATCCAATGTCTTATACATGCCAAACATGGACTGTAATGTTGAACTGCATCCACAGCC
TGAAATATATAGTCTTTCTGGTTCCTACCAGTAAATTCCTATGGAAACCATCCAGAAAGTCTCT
CTTAGAAGTAGACAGTTTATCCTTAGCTGTAAATCACATACAATGTATCATACCAGTTTTGGGA
TTTTACAACATGTTTTCCGTATTTTTTACAGGTTATCTTTAGTTTATTTGAGGAGAAATAATAA
AAAAATAATTTCTTAGTGAGAAAAATTGAAATAAAGTTACTGTTACAGATGTTATAAGCTTTTG
TAGTAAGTATTAAACTTATCATTTCCCACCATTTGGAGCAGTTACAATGTAACCAAGAGAAGTG
AGCTGTGATGCAAGGCACCCACAAAACACCTGCCCTCTTGTGGATAAAAGCAATGTAAGAGGTG
TCCAGGAAAATGGCACGTGCTGAGGTGAGAACAGCAGTGAACACAGACTCCTGGTGAAGACATG
GCAACTGACTAAACTCAGCCACGTTCCAGGTTTCACGAGTCAATAAAACTTTACCCTTTGCAAA
AATGTATTGGCAGATCAGATATATGCAGACATTCATATAAAGCTCGTCTGTGGTAAAGTCTTTT
TACCTTACCACATTAGTCTTTTTCTTACGTGACAAGCAGCTCTGTAGTGTTTATTGGAATAAGA
ACTTTACCTCCTGGTAACTAATAGTATGTAATGTGTGTAATGTTTTATCTGAAGCTTTAACAGC
TTACATGAGGTTTCTCACTCGAGTGTGTAAGTCAAACAATCTCTGGTGTTCCCCAGGATATCCA
CCTGTCTCCACCTTCTCAGTATGGGATACATACATCTTCCCAGTATGGGATACAACCATATGCT
GTCATATCTGGCTTTTTATGTGGATCCTGGGGGTTACGCTCAGGTCCTTGTGACTGCAAGGCAA
GCTCTTTACCAACCGAGCCATACGCCAGCCCAGTGTTGTGGAGCTTTTGTGTGGTCTGAGGTAT
CCCTCGCTGCACACGTATTGAGAGAGTTTCGGATGCCTGGGCCTGTGTGCCACAGCTGGGAAGT
AGCAGTGGGCTTTGCAGGCTGTAGTCTGGCCTCTTCCTAGTTGATAGCCACACCACAGTCATTA
GCTACTTCTGTTCCTCTGTCTTCCCTACCCTGACACTTATTCCCTGAACCAAGATCCCAAGCAT
CTCCCCCCTCATCTGCTTCTGTCGGGTATGTGGTCACAGAGTAAAGTTACTAATATATAAACCC

hide sequence

RefSeq Acc Id:

XM_017594068 ⟹ XP_017449557

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	25,700,142 - 25,711,767 (-)	NCBI
Rnor_6.0	6	27,072,259 - 27,080,863 (-)	NCBI

Sequence:

show sequence

CGTCTGATTTTTGAACTACTGGCGGCGGAGATCCGGCGTCCCTGACTCGGGCACGGTAGGCTTG
CTGTCGAGTTCCGTTTTGGCCGCAGGACCCGGAAGGCTTAGGAGGAGTCGGCTGAGCCCGGACC
CTCGCGTCCAGCCATGGTCGGGCGCCGCAAGCCAGGGACCCCGAGGAGGCGACCCTCTAGTCCG
GCGCCCGGACCCTCTCAGCCAGCCACGGACTCGCGTCGCCAGTCGAGGACTCCGACGAGGCGGC
CCTCCAGTCCGGCGCCCGGACCCTCGCGACGGAGCTCCGGAGTAGGCCCTCAGGCACTACACAG
AAGACGGAGATTCCTGTGGCTTAAGGAAATAAAGAACCTGCAAAAGAGCACAGACCTCTTGTTT
AGGAAGAAGCCTTTCGGCCTCGTGGTAAGAGAAATATGTGGGAAATTCAGCCGTGGTGTGGATT
TATATTGGCAAGCTCAGGCCTTGTTGGCCCTTCAAGAGACAATACCTGGAATCTTTTGGAGCTG
CAGCCAAACAGCAGTGTCTGAGGCACTGCCTGGATATTGCTGGTTTTGAGCAGTGGCTACACGA
TGCCCTTTAAGATTGTGGCTTTTGCCTGTGACAGAGGAAGAAGAGGCCATCTGCCTCGCCCATG
GACACGAATGAGTGTTTGCAGACCAAAGGTCAACTTGGTTTGTGAATTGCTCAACCACATTACT
GTTTGCGGGTTTCAGACCCATGAGGTCTGCCATGTTATGAGGGGTATTGATATTTTATTCTTCC
TGTACCATGTGCATCTTTTATCCTGTGTCTTTGTACTTTTTAAATATAAGGGAGAAGTTTTTGA
GTAAAATGTTAGAATCTGTTGTATGGAAAGCCCTGGCAGTCCCGCCCGCCATACAAATGTCTGC
CTTCCAGATTGCCCTCACGCTGCCTGTCAGCAAACATGGAGCTTTTCAAAACTTAAGTAGCGTT
ACATACACAGTCTTCTCTTCCTTCCCTTCAAGGCTGGGACTTGAATCCAATGTCTTATACATGC
CAAACATGGACTGTAATGTTGAACTGCATCCACAGCCTGAAATATATAGTCTTTCTGGTTCCTA
CCAGTAAATTCCTATGGAAACCATCCAGAAAGTCTCTCTTAGAAGTAGACAGTTTATCCTTAGC
TGTAAATCACATACAATGTATCATACCAGTTTTGGGATTTTACAACATGTTTTCCGTATTTTTT
ACAGGTTATCTTTAGTTTATTTGAGGAGAAATAATAAAAAAATAATTTCTTAGTGAGAAAAATT
GAAATAAAGTTACTGTTACAGATGTTATAAGCTTTTGTAGTAAGTATTAAACTTATCATTTCCC
ACCATTTGGAGCAGTTACAATGTAACCAAGAGAAGTGAGCTGTGATGCAAGGCACCCACAAAAC
ACCTGCCCTCTTGTGGATAAAAGCAATGTAAGAGGTGTCCAGGAAAATGGCACGTGCTGAGGTG
AGAACAGCAGTGAACACAGACTCCTGGTGAAGACATGGCAACTGACTAAACTCAGCCACGTTCC
AGGTTTCACGAGTCAATAAAACTTTACCCTTTGCAAAAATGTATTGGCAGATCAGATATATGCA
GACATTCATATAAAGCTCGTCTGTGGTAAAGTCTTTTTACCTTACCACATTAGTCTTTTTCTTA
CGTGACAAGCAGCTCTGTAGTGTTTATTGGAATAAGAACTTTACCTCCTGGTAACTAATAGTAT
GTAATGTGTGTAATGTTTTATCTGAAGCTTTAACAGCTTACATGAGGTTTCTCACTCGAGTGTG
TAAGTCAAACAATCTCTGGTGTTCCCCAGGATATCCACCTGTCTCCACCTTCTCAGTATGGGAT
ACATACATCTTCCCAGTATGGGATACAACCATATGCTGTCATATCTGGCTTTTTATGTGGATCC
TGGGGGTTACGCTCAGGTCCTTGTGACTGCAAGGCAAGCTCTTTACCAACCGAGCCATACGCCA
GCCCAGTGTTGTGGAGCTTTTGTGTGGTCTGAGGTATCCCTCGCTGCACACGTATTGAGAGAGT
TTCGGATGCCTGGGCCTGTGTGCCACAGCTGGGAAGTAGCAGTGGGCTTTGCAGGCTGTAGTCT
GGCCTCTTCCTAGTTGATAGCCACACCACAGTCATTAGCTACTTCTGTTCCTCTGTCTTCCCTA
CCCTGACACTTATTCCCTGAACCAAGATCCCAAGCATCTCCCCCCTCATCTGCTTCTGTCGGGT
ATGTGGTCACAGAGTAAAGTTACTAATATATAAACCC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100181	(Get FASTA)	NCBI Sequence Viewer
	XP_006239860	(Get FASTA)	NCBI Sequence Viewer
	XP_017449557	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66997	(Get FASTA)	NCBI Sequence Viewer
	EDM02981	(Get FASTA)	NCBI Sequence Viewer
	EDM02982	(Get FASTA)	NCBI Sequence Viewer
	EDM02983	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001100181 ⟸ NM_001106711
- UniProtKB:	B2RZ23 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGRRKPGTPRRRPSSPAPGPSQPATDSRRQSRTPTRRPSSPAPGPSRRSSGVGPQALHRRRRF LWLKEIKNLQKSTDLLFRKKPFGLVVREICGKFSRGVDLYWQAQALLALQEAAEAFLVHLFEDA YLLSLHAGRVTLFPKDVQLARRIRGIEGGLG hide sequence

RefSeq Acc Id:	XP_006239860 ⟸ XM_006239798
- Peptide Label:	isoform X1
- UniProtKB:	B2RZ23 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGRRKPGTPRRRPSSPAPGPSQPATDSRRQSRTPTRRPSSPAPGPSRRSSGVGPQALHRRRRF LWLKEIKNLQKSTDLLFRKKPFGLVVREICGKFSRGVDLYWQAQALLALQEAAEAFLVHLFEDA YLLSLHAGRVTLFPKDVQLARRIRGIEGGLG hide sequence

RefSeq Acc Id:	XP_017449557 ⟸ XM_017594068
- Peptide Label:	isoform X2
- Sequence:	show sequence MVGRRKPGTPRRRPSSPAPGPSQPATDSRRQSRTPTRRPSSPAPGPSRRSSGVGPQALHRRRRF LWLKEIKNLQKSTDLLFRKKPFGLVVREICGKFSRGVDLYWQAQALLALQETIPGIFWSCSQTA VSEALPGYCWF hide sequence

RefSeq Acc Id:

ENSRNOP00000012512 ⟸ ENSRNOT00000012512

RefSeq Acc Id:

ENSRNOP00000083188 ⟸ ENSRNOT00000117984

Protein Domains

Histone H2A/H2B/H3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RZ23-F1-model_v2	AlphaFold	B2RZ23	1-159	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694462

Promoter ID:

EPDNEW_R4985

Type:

initiation region

Name:

Cenpa_1

Description:

centromere protein A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	27,080,820 - 27,080,880	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563607	AgrOrtholog
BioCyc Gene	G2FUF-38314	BioCyc
Ensembl Genes	ENSRNOG00000032178	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000012512	ENTREZGENE
	ENSRNOP00000012512.3	UniProtKB/TrEMBL
	ENSRNOP00000083188.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012512	ENTREZGENE
	ENSRNOT00000012512.7	UniProtKB/TrEMBL
	ENSRNOT00000117984.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.20.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8365241	IMAGE-MGC_LOAD
InterPro	Histone-fold	UniProtKB/TrEMBL
	Histone_core_D	UniProtKB/TrEMBL
	Histone_H3	UniProtKB/TrEMBL
KEGG Report	rno:298850	UniProtKB/TrEMBL
MGC_CLONE	MGC:189150	IMAGE-MGC_LOAD
NCBI Gene	298850	ENTREZGENE
PANTHER	CENTROMERE PROTEIN A	UniProtKB/TrEMBL
	HISTONE H3.2	UniProtKB/TrEMBL
Pfam	Histone	UniProtKB/TrEMBL
PhenoGen	Cenpa	PhenoGen
PRINTS	HISTONEH3	UniProtKB/TrEMBL
SMART	SM00428	UniProtKB/TrEMBL
Superfamily-SCOP	Histone-fold	UniProtKB/TrEMBL
UniProt	A0A8I5ZWQ2_RAT	UniProtKB/TrEMBL
	B2RZ23	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Cenpa	centromere protein A	RGD1563607_predicted	similar to centromere protein A (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1563607_predicted	similar to centromere protein A (predicted)	LOC298850	similar to centromere protein A	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC298850	similar to centromere protein A			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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