Sypl1-ps2 (synaptophysin-like 1, pseudogene 2) - Rat Genome Database

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Gene: Sypl1-ps2 (synaptophysin-like 1, pseudogene 2) Rattus norvegicus
Analyze
Symbol: Sypl1-ps2
Name: synaptophysin-like 1, pseudogene 2
RGD ID: 7609114
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC102548187; LOC680604; similar to synaptophysin-like protein; synaptophysin-like protein 1-like
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8616,297,876 - 16,301,499 (-)NCBIGRCr8
mRatBN7.2610,545,497 - 10,548,918 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.067,362,992 - 7,366,644 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.067,305,773 - 7,307,713 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.467,477,240 - 7,477,941 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera610,254,058 - 10,257,709 (-)NCBICelera
Cytogenetic Map6q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6125740059Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6120510098Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-38632 BioCyc
NCBI Gene LOC102548187 ENTREZGENE
PhenoGen Sypl1-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Sypl1-ps2  synaptophysin-like 1, pseudogene 2  LOC102548187  synaptophysin-like protein 1-like  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC102548187  synaptophysin-like protein 1-like  LOC680604  similar to synaptophysin-like protein  Data merged from RGD:1589472 737654 PROVISIONAL
2013-12-18 LOC102548187  synaptophysin-like protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC680604  similar to synaptophysin-like protein  LOC682287  similar to synaptophysin-like protein  Data merged from RGD:1585706 1643240 APPROVED
2006-11-19 LOC680604  similar to synaptophysin-like protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682287  similar to synaptophysin-like protein      Symbol and Name status set to provisional 70820 PROVISIONAL