 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Molecular Function
Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsCellular Component
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Molecular Function
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References - curated| 1. | MGD data from the GO Consortium |
| 2. | RGD automated data pipeline |
| 3. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 4. | RGD automated import pipeline for gene-chemical interactions |
References - uncurated| PubMed | 8889548 10545507 10995443 11316798 12477932 15489334 17610895 17728463 19931615 20530487 25931508 |
Genomics
Comparative Map Data| Dtnb (Rattus norvegicus - Norway rat) |
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| DTNB (Homo sapiens - human) |
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| Dtnb (Mus musculus - house mouse) |
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| Dtnb (Chinchilla lanigera - long-tailed chinchilla) |
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| DTNB (Pan paniscus - bonobo/pygmy chimpanzee) |
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| DTNB (Canis lupus familiaris - dog) |
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| Dtnb (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| DTNB (Sus scrofa - pig) |
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Position Markers| D6Got16 |
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| D6Uia2 |
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| BF405608 |
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| MARC_10279-10280:998924900:1 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001012191 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006239818 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017594216 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017594217 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017594218 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001838174 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001838175 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001838176 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001838177 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001838178 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001838179 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001838180 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001838181 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001838182 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07063305 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07063306 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07063307 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07063308 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07063309 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07063310 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07063311 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07063312 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042380 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042381 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042382 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042383 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042384 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042385 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042386 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042387 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042388 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042389 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042390 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042391 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01042392 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC081889 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ226040 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | NM_001012191 ⟹ NP_001012191 | ||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
CGAGGCTCCCGGTAGACGAACCTGTCTACTCAGGTCACCTCTGATGGGCACAGTGTCCCGAGAAhide sequence |
| RefSeq Acc Id: | XM_006239818 ⟹ XP_006239880 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CCCTCGCGCCGGGGGCGGGCTCGCTGCGCGTGCCGGGCGGGGAAGCGGCGCGAGCCGGCGCCAGhide sequence |
| RefSeq Acc Id: | XM_017594216 ⟹ XP_017449705 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CCCTCGCGCCGGGGGCGGGCTCGCTGCGCGTGCCGGGCGGGGAAGCGGCGCGAGCCGGCGCCAGhide sequence |
| RefSeq Acc Id: | XM_017594217 ⟹ XP_017449706 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CCCTCGCGCCGGGGGCGGGCTCGCTGCGCGTGCCGGGCGGGGAAGCGGCGCGAGCCGGCGCCAGhide sequence |
| RefSeq Acc Id: | XM_017594218 ⟹ XP_017449707 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CCCTCGCGCCGGGGGCGGGCTCGCTGCGCGTGCCGGGCGGGGAAGCGGCGCGAGCCGGCGCCAGhide sequence |
| RefSeq Acc Id: | XR_001838174 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | NON-CODING | |||||||||
| Position: |
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| Sequence: |
GCCCTCGCGCCGGGGGCGGGCTCGCTGCGCGTGCCGGGCGGGGAAGCGGCGCGAGCCGGCGCCAhide sequence |
| RefSeq Acc Id: | XR_001838175 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | NON-CODING | |||||||||
| Position: |
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| Sequence: |
CCCTCGCGCCGGGGGCGGGCTCGCTGCGCGTGCCGGGCGGGGAAGCGGCGCGAGCCGGCGCCAGhide sequence |
| RefSeq Acc Id: | XR_001838176 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | NON-CODING | |||||||||
| Position: |
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| Sequence: |
CCCTCGCGCCGGGGGCGGGCTCGCTGCGCGTGCCGGGCGGGGAAGCGGCGCGAGCCGGCGCCAGhide sequence |
| RefSeq Acc Id: | XR_001838177 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | NON-CODING | |||||||||
| Position: |
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| Sequence: |
CCCTCGCGCCGGGGGCGGGCTCGCTGCGCGTGCCGGGCGGGGAAGCGGCGCGAGCCGGCGCCAGhide sequence |
| RefSeq Acc Id: | XR_001838178 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | NON-CODING | |||||||||
| Position: |
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| Sequence: |
CCCTCGCGCCGGGGGCGGGCTCGCTGCGCGTGCCGGGCGGGGAAGCGGCGCGAGCCGGCGCCAGhide sequence |
| RefSeq Acc Id: | XR_001838179 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | NON-CODING | |||||||||
| Position: |
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| Sequence: |
TGCTATTATCCGGATGTTGGGGTGTATTTTTAAATGATATTCAAAGAATGAAAAACGGAGTTTAhide sequence |
| RefSeq Acc Id: | XR_001838180 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | NON-CODING | |||||||||
| Position: |
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| Sequence: |
CCTTCCTTCCACTCACCAAATCAATGTGGAGCAGTCCATCAGTCTCCTCCTCAACTTTATGATChide sequence |
| RefSeq Acc Id: | XR_001838181 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | NON-CODING | |||||||||
| Position: |
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| Sequence: |
ACTGGAACTCAAGCAGTTCCTGAACCACGAGGGGAGTCCTGATTTGATGAAGACATCCCAATTAhide sequence |
| RefSeq Acc Id: | XR_001838182 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | NON-CODING | |||||||||
| Position: |
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| Sequence: |
AGTGTGCGACGGTAAACTGCTATTATCCGGATGTTGGGGTGTATTTTTAAATGATATTCAAAGAhide sequence |
Protein Sequences| Protein RefSeqs | NP_001012191 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006239880 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017449705 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017449706 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017449707 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAH81889 | (Get FASTA) | NCBI Sequence Viewer |
| P84060 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001012191 ⟸ NM_001012191 |
| - UniProtKB: | P84060 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MIEEGGNKRKTMAEKRQLFIEMRAQNFDVIRLSTYRTACKLRFVQKRCNLHLVDIWNMIEAFRDhide sequence |
| RefSeq Acc Id: | XP_006239880 ⟸ XM_006239818 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MIEEGGNKRKTMAEKRQLFIEMRAQNFDVIRLSTYRTACKLRFVQKRCNLHLVDIWNMIEAFRDhide sequence |
| RefSeq Acc Id: | XP_017449705 ⟸ XM_017594216 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MIEEGGNKRKTMAEKRQLFIEMRAQNFDVIRLSTYRTACKLRFVQKRCNLHLVDIWNMIEAFRDhide sequence |
| RefSeq Acc Id: | XP_017449706 ⟸ XM_017594217 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MIEEGGNKRKTMAEKRQLFIEMRAQNFDVIRLSTYRTACKLRFVQKRCNLHLVDIWNMIEAFRDhide sequence |
| RefSeq Acc Id: | XP_017449707 ⟸ XM_017594218 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MIEEGGNKRKTMAEKRQLFIEMRAQNFDVIRLSTYRTACKLRFVQKRCNLHLVDIWNMIEAFRDhide sequence |
TranscriptomePromoters| RGD ID: | 13694472 | |||||||||
| Promoter ID: | EPDNEW_R4994 | |||||||||
| Type: | initiation region | |||||||||
| Name: | Dtnb_1 | |||||||||
| Description: | dystrobrevin, beta | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Damaging VariantsAssembly: RGSC_v3.4
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 6 | 26733953 | 26733954 | T | G | snv | SS/JrHsdMcwi (MCW) |
Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1309579 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000011914 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000057536 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOP00000069544 | ENTREZGENE, UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000060810 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOT00000077830 | ENTREZGENE, UniProtKB/TrEMBL | |
| IMAGE_CLONE | IMAGE:7109493 | IMAGE-MGC_LOAD |
| InterPro | Distrobrevin | UniProtKB/Swiss-Prot |
| EF-hand-dom_pair | UniProtKB/Swiss-Prot | |
| EF-hand_dom_typ1 | UniProtKB/Swiss-Prot | |
| EF-hand_dom_typ2 | UniProtKB/Swiss-Prot | |
| Znf_ZZ | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:362715 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:93784 | IMAGE-MGC_LOAD |
| NCBI Gene | 362715 | ENTREZGENE |
| Pfam | EF-hand_2 | UniProtKB/Swiss-Prot |
| EF-hand_3 | UniProtKB/Swiss-Prot | |
| PF00569 | UniProtKB/Swiss-Prot | |
| PhenoGen | Dtnb | PhenoGen |
| PIRSF | Distrobrevin | UniProtKB/Swiss-Prot |
| PROSITE | ZF_ZZ_1 | UniProtKB/Swiss-Prot |
| ZF_ZZ_2 | UniProtKB/Swiss-Prot | |
| SMART | ZnF_ZZ | UniProtKB/Swiss-Prot |
| Superfamily-SCOP | SSF47473 | UniProtKB/Swiss-Prot |
| UniGene | Rn.61275 | ENTREZGENE |
| UniProt | A0A0G2JVM6_RAT | UniProtKB/TrEMBL |
| DTNB_RAT | UniProtKB/Swiss-Prot, ENTREZGENE | |
| UniProt Secondary | Q66HF4 | UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2005-12-06 | Dtnb | dystrobrevin, beta | Dtnb_predicted | dystrobrevin, beta (predicted) | Symbol and Name updated | 1559027 | APPROVED |
| 2005-01-12 | Dtnb_predicted | dystrobrevin, beta (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
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| More on Dtnb | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1309579 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-08-20 |
| Status: | ACTIVE |
