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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Ttc7a | Rat | multiple intestinal atresia | | ISO | TTC7A (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Ttc7a | Rat | multiple intestinal atresia | | ISO | TTC7A (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
3. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
4. | GOA pipeline | RGD automated data pipeline |
5. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
6. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Ttc7a (Rattus norvegicus - Norway rat) |
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TTC7A (Homo sapiens - human) |
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Ttc7 (Mus musculus - house mouse) |
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Ttc7a (Chinchilla lanigera - long-tailed chinchilla) |
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TTC7A (Pan paniscus - bonobo/pygmy chimpanzee) |
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TTC7A (Canis lupus familiaris - dog) |
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Ttc7a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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TTC7A (Sus scrofa - pig) |
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TTC7A (Chlorocebus sabaeus - green monkey) |
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Ttc7a (Heterocephalus glaber - naked mole-rat) |
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Variants in Ttc7a
948 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH127773 |
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RH131016 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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20 | 13 | 74 | 208 | 91 | 90 | 59 | 152 | 59 | 6 | 460 | 268 | 21 | 187 | 105 | 116 | 31 | 32 | 32 |
RefSeq Transcripts | NM_001100756 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_008764464 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017594213 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039112459 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063262049 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC098811 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC168226 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473947 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000006 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000061747 ⟹ ENSRNOP00000058460 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000086247 ⟹ ENSRNOP00000070081 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000102792 ⟹ ENSRNOP00000081134 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000106208 ⟹ ENSRNOP00000084447 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001100756 ⟹ NP_001094226 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008764464 ⟹ XP_008762686 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039112459 ⟹ XP_038968387 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063262049 ⟹ XP_063118119 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001094226 | (Get FASTA) | NCBI Sequence Viewer |
XP_008762686 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038968387 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063118119 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH98811 | (Get FASTA) | NCBI Sequence Viewer |
AAI68226 | (Get FASTA) | NCBI Sequence Viewer | |
EDM02642 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000058460 | ||
ENSRNOP00000058460.3 | |||
ENSRNOP00000070081.2 | |||
ENSRNOP00000081134.1 | |||
ENSRNOP00000084447.1 |
RefSeq Acc Id: | NP_001094226 ⟸ NM_001100756 |
- UniProtKB: | B4F7D1 (UniProtKB/TrEMBL), A0A8I5ZS78 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008762686 ⟸ XM_008764464 |
- Peptide Label: | isoform X2 |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000058460 ⟸ ENSRNOT00000061747 |
Ensembl Acc Id: | ENSRNOP00000070081 ⟸ ENSRNOT00000086247 |
RefSeq Acc Id: | XP_038968387 ⟸ XM_039112459 |
- Peptide Label: | isoform X3 |
Ensembl Acc Id: | ENSRNOP00000084447 ⟸ ENSRNOT00000106208 |
Ensembl Acc Id: | ENSRNOP00000081134 ⟸ ENSRNOT00000102792 |
RefSeq Acc Id: | XP_063118119 ⟸ XM_063262049 |
- Peptide Label: | isoform X1 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-A0A0G2JX01-F1-model_v2 | AlphaFold | A0A0G2JX01 | 1-859 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13694393 | ||||||||
Promoter ID: | EPDNEW_R4918 | ||||||||
Type: | initiation region | ||||||||
Name: | Ttc7a_1 | ||||||||
Description: | tetratricopeptide repeat domain 7A | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1306211 | AgrOrtholog |
BioCyc Gene | G2FUF-38725 | BioCyc |
Ensembl Genes | ENSRNOG00000014879 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000061747 | ENTREZGENE |
ENSRNOT00000061747.4 | UniProtKB/TrEMBL | |
ENSRNOT00000086247.2 | UniProtKB/TrEMBL | |
ENSRNOT00000102792.1 | UniProtKB/TrEMBL | |
ENSRNOT00000106208.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.25.40.10 | UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7377069 | IMAGE-MGC_LOAD |
InterPro | Endocytosis_PI4K-reg_protein | UniProtKB/TrEMBL |
TPR-like_helical | UniProtKB/TrEMBL | |
TPR_repeat | UniProtKB/TrEMBL | |
TTC7_N | UniProtKB/TrEMBL | |
KEGG Report | rno:362696 | UniProtKB/TrEMBL |
MGC_CLONE | MGC:112855 | IMAGE-MGC_LOAD |
NCBI Gene | 362696 | ENTREZGENE |
PANTHER | PTHR23083:SF475 | UniProtKB/TrEMBL |
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR | UniProtKB/TrEMBL | |
Pfam | TPR_16 | UniProtKB/TrEMBL |
TPR_8 | UniProtKB/TrEMBL | |
TTC7_N | UniProtKB/TrEMBL | |
PhenoGen | Ttc7a | PhenoGen |
PROSITE | TPR | UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000014879 | RatGTEx |
SMART | TPR | UniProtKB/TrEMBL |
Superfamily-SCOP | SSF48452 | UniProtKB/TrEMBL |
UniProt | A0A0G2JX01_RAT | UniProtKB/TrEMBL |
A0A8I5ZS78 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I5ZZB8_RAT | UniProtKB/TrEMBL | |
B4F7D1 | ENTREZGENE, UniProtKB/TrEMBL | |
F7F5R5_RAT | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2013-03-04 | Ttc7a | tetratricopeptide repeat domain 7A | Ttc7 | tetratricopeptide repeat domain 7 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | Ttc7 | tetratricopeptide repeat domain 7 | Ttc7_predicted | tetratricopeptide repeat domain 7 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-12 | Ttc7_predicted | tetratricopeptide repeat domain 7 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |