Advanced Search (OLGA)

Gene: Ston1 (stonin 1) Rattus norvegicus

Analyze

Symbol:

Ston1

Name:

stonin 1

RGD ID:

727878

Description:

Predicted to enable clathrin adaptor activity. Predicted to be involved in clathrin-dependent endocytosis; regulation of endocytosis; and synaptic vesicle endocytosis. Predicted to act upstream of or within several processes, including cell-substrate junction organization; platelet-derived growth factor receptor signaling pathway; and ruffle assembly. Predicted to be located in cell leading edge; cell projection; and clathrin-coated pit. Predicted to be part of AP-2 adaptor complex. Predicted to be active in synaptic vesicle. Orthologous to several human genes including STON1 (stonin 1); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Salf; Sblf; stoned B-like factor; stoned B/TFIIA-alpha/beta-like factor; stonin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STON1 (stonin 1)	HGNC	Ensembl, HomoloGene, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ston1 (stonin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ston1 (stonin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STON1 (stonin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STON1 (stonin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ston1 (stonin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STON1 (stonin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ston1 (stonin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	STON1-GTF2A1L (STON1-GTF2A1L readthrough)	HGNC	OrthoDB, Treefam
Homo sapiens (human):	GTF2A1L (general transcription factor IIA subunit 1 like)	HGNC	OrthoDB
Homo sapiens (human):	RAET1L (retinoic acid early transcript 1L)	HGNC	OMA
Homo sapiens (human):	ULBP2 (UL16 binding protein 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Ston1 (stonin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	STON1 (stonin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	STON1-GTF2A1L (STON1-GTF2A1L readthrough)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gtf2a1l (general transcription factor IIA, 1-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-41	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	stnB	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	APM2	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ston1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	11,596,726 - 11,646,098 (-)	NCBI		GRCr8
mRatBN7.2	6	5,843,186 - 5,892,557 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	5,843,185 - 5,892,449 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	6,126,910 - 6,143,871 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	6,436,295 - 6,453,257 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	5,963,459 - 5,980,420 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	12,332,465 - 12,379,783 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	12,362,813 - 12,379,783 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	22,295,409 - 22,342,414 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	12,473,166 - 12,490,453 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	12,482,954 - 12,490,453 (+)	NCBI
Celera	6	5,617,926 - 5,634,858 (-)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

myoepithelioma (ISO)

Pitt-Hopkins-like syndrome 2 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

cytarabine (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

ethanol (ISO)

fenamidone (ISO)

FR900359 (ISO)

inulin (ISO)

isoprenaline (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

N-nitrosomorpholine (EXP)

ozone (EXP,ISO)

panobinostat (ISO)

paracetamol (EXP)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

propanal (ISO)

SB 431542 (ISO)

senecionine (ISO)

silicon dioxide (ISO)

sulforaphane (ISO)

sunitinib (ISO)

testosterone (EXP)

tetrachloromethane (ISO)

trichostatin A (ISO)

triclosan (ISO)

triptonide (ISO)

valproic acid (ISO)

vanadyl sulfate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

clathrin-dependent endocytosis (IBA)

endocytosis (IEA,ISO)

focal adhesion assembly (IEA,ISO)

focal adhesion disassembly (IEA,ISO)

platelet-derived growth factor receptor signaling pathway (IEA,ISO)

regulation of endocytosis (IBA,IEA,ISO)

ruffle assembly (IEA,ISO)

substrate-dependent cell migration (IEA,ISO)

synaptic vesicle endocytosis (IBA)

Cellular Component

AP-2 adaptor complex (IBA)

cell leading edge (IEA,ISO)

cell projection (IEA,ISO)

clathrin-coated pit (IEA,ISO)

cytoplasm (IEA)

synaptic vesicle (IBA)

Molecular Function

cargo adaptor activity (IEA,ISO)

clathrin adaptor activity (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Stonin 2: an adaptor-like protein that interacts with components of the endocytic machinery.	Martina JA, etal., J Cell Biol 2001 May 28;153(5):1111-20.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	NCBI rat LocusLink and RefSeq merged data October 15, 2003	NCBI rat LocusLink and RefSeq merged data October 15, 2003
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11454741	PMID:15632090	PMID:26437238

Genomics

Comparative Map Data

Ston1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	11,596,726 - 11,646,098 (-)	NCBI		GRCr8
mRatBN7.2	6	5,843,186 - 5,892,557 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	5,843,185 - 5,892,449 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	6,126,910 - 6,143,871 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	6,436,295 - 6,453,257 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	5,963,459 - 5,980,420 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	12,332,465 - 12,379,783 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	12,362,813 - 12,379,783 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	22,295,409 - 22,342,414 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	12,473,166 - 12,490,453 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	12,482,954 - 12,490,453 (+)	NCBI
Celera	6	5,617,926 - 5,634,858 (-)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

STON1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	48,530,154 - 48,598,513 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	48,529,383 - 48,598,513 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	48,757,293 - 48,825,652 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	48,661,267 - 48,679,549 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	48,647,657 - 48,665,958 (+)	NCBI		Celera
Cytogenetic Map	2	p16.3	NCBI
HuRef	2	48,493,878 - 48,559,017 (+)	NCBI		HuRef
CHM1_1	2	48,687,388 - 48,756,387 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	48,536,051 - 48,601,303 (+)	NCBI		T2T-CHM13v2.0

Ston1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	88,905,043 - 88,955,293 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	88,905,112 - 88,970,014 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	88,597,615 - 88,647,865 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	88,597,684 - 88,662,586 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	89,025,895 - 89,045,064 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	86,941,942 - 86,952,124 (+)	NCBI		MGSCv36	mm8
Celera	17	93,037,396 - 93,056,634 (+)	NCBI		Celera
Cytogenetic Map	17	E4	NCBI
cM Map	17	58.1	NCBI

Ston1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955441	15,112,555 - 15,127,354 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955441	15,071,765 - 15,126,534 (+)	NCBI	ChiLan1.0	ChiLan1.0

STON1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	77,782,281 - 77,847,876 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	77,786,249 - 77,851,686 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	48,656,425 - 48,722,288 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	49,577,511 - 49,642,326 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	49,577,562 - 49,721,845 (+)	Ensembl	panpan1.1		panPan2

STON1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	50,421,635 - 50,470,302 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	50,436,715 - 50,467,878 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	50,308,598 - 50,320,873 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	51,300,762 - 51,349,431 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	51,300,563 - 51,349,344 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	51,034,108 - 51,046,363 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	51,321,258 - 51,333,576 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	51,509,291 - 51,521,570 (+)	NCBI		UU_Cfam_GSD_1.0

Ston1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	32,637,354 - 32,687,611 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936508	4,065,711 - 4,116,652 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936508	4,068,102 - 4,116,166 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STON1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	92,092,635 - 92,109,713 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	92,091,763 - 92,145,386 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	97,836,597 - 97,851,449 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Ston1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	29,785,501 - 29,803,752 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	29,747,179 - 29,803,676 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ston1
285 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	160
Count of miRNA genes:	106
Interacting mature miRNAs:	120
Transcripts:	ENSRNOT00000022370
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	41223769	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	41223769	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	39036266	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	43394190	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	27574569	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	41223769	Rat
2293706	Bmd20	Bone mineral density QTL 20	4.3	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	5074497	19988050	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	41223769	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	34235784	Rat
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	27574569	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	27574569	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	42487980	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	42487980	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42838846	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	27574569	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	34434305	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	72227641	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	54641141	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	42487980	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	41223769	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	27574569	Rat
1578758	Tcas9	Tongue tumor susceptibility QTL 9	3.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	6	1	37618905	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_182954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY300793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022370 ⟹ ENSRNOP00000022370

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	5,843,187 - 5,862,131 (-)	Ensembl
Rnor_6.0 Ensembl	6	12,362,813 - 12,379,783 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118638 ⟹ ENSRNOP00000088331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	5,843,185 - 5,892,449 (-)	Ensembl

RefSeq Acc Id:

NM_182954 ⟹ NP_891999

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	11,598,700 - 11,615,635 (-)	NCBI
mRatBN7.2	6	5,845,160 - 5,862,097 (-)	NCBI
Rnor_6.0	6	12,362,813 - 12,379,783 (+)	NCBI
Rnor_5.0	6	22,295,409 - 22,342,414 (+)	NCBI
RGSC_v3.4	6	12,473,166 - 12,490,453 (+)	RGD
Celera	6	5,617,926 - 5,634,858 (-)	RGD

Sequence:

show sequence

GCCAGAGATGTTCAGCCTCGGTAAAAGCCCAGAGGCTGGAGCGGGAGTCTGCCTGACCGTGACT
ATGGGGTCCAGCTGACAGCTTCCAGGGACAGCTTCAGCATCAGTCCCTCAACTTCTGGCACATT
CAGAGGAGCAAGATATTAGGGTCCATGTGAAATGAGGCCGTTCCTCTCCACAGACCGGCAATGA
TGTGGAGACAAAGCCTTAGCCACAAGTGGTCTGGAATGTTACTTTGCCAGCTAAAGGCCACCAG
TCGGATTTCAACAATCTGCAGGAGATGAGACAATGTCCCTGACTCTTTGACCAGACCACAAGCC
CATCTTGAAGATGTGTTCTACAAACCCAGGCAGCTGGGTCACCTTTGACGATGACTCTCTTTTT
CAGTCTTCTCCGAAGAAAAAGGATTTATCTCTGGAGACTCAAGGTGTTTGCAGACCAAATGGAC
TGAAGCTGGACCTTCCTGGCCTCAGGGACCTTCCCAATACCCCCTCCTCCACCGGCAGCACCCC
TTTGTCCTCTCCCATGGTGGACTTTTACTTCAGTCCAGGGCCTCCAAGCAACTCGCCTCTTTCT
ACACCCACCAAAGACTTCCCGGGGTTCCCTGGCATCCCTAAAGCGGGGACACATGTGCTTTATC
CTATTCCAGAGTGTTCTTCAAGCGGTCCCCCCACAACAGCGGGAGGAGCAGGTCCCCCGTTATC
ACTTACTAAGCCAACCTGCTCACCCCATGTATCGTTACCCAGTGGCCACTCGCACACCCAGCTG
ACTCCCACAGCGGGTCTTACAGAAGACGCCAGCCCTCGGGGGGTCCAAAGCGAGGCTCGACAGT
TCGAGTATTTTCAGGATGACTGTGCTTTTTCCAACCCATTTTGGAAAGATGAAGGTGGCAACTC
TCAGTTTCCCTTTGACTCCCTGGCAAGCAGAAAGCTGTTCTCACCAAGGGACAAGGAGGTACCT
GACGATCAAAAAAGCCTAAACCAGTGCTCATTGAACTACATCTGTGAGAAGCTCGAACACTTGC
AGTCAGCGGAGACCCAAGACCCTCTTGGAAACTTGTCTATGCAGAGCTCGTACGCTGGAGGCAC
ATTCTCTTTTGTCCCACACACCCTCTTCCGGAGTCAGCCCAAAGCTGGATGGTCCTTCATGTTG
AGGATTCCTGAGAAGAAGAACATGATGTCTTCCCGGCAGTGGGGACCCATTTTCCTAAAGGTTC
TTCCCGGCGGGATCCTGCAGATGTACTATGAGAAGGGGCTGGAAAAACCATTCAAAGAGTTCCA
GCTCAATCCGCATTGCAGACTCTCGGAACCCAAACTGGAGAACTTCAGCATGGCAGGGAAGATC
CACACTGTGAAGGTAGAGCACGTGTCTTACTCCGAGAAAAGGAAATACCATTCCAAGGTGGAGG
TGGTTCACGAGCCCGAGGTGGAGCAGATGCTGAAGCTAGGGTCCACGGAACACCGTGACTTCCT
TGAATTTCTGACTACTGTGGAAGAGGAGCTAGTAAAGCTGCCGGCTACGGCAAAACCGAAGAAC
AAAATCTATGAGGAGCAAGAGATTCACCTGGACATTCTGGACAGCTTCTGGGGCAAAGTGACCA
AGGAAGAGGGCAAGCTGGTCGAGAGCGCTGTGCTAACTCAGGTCTGCTGCCTCTGCTTTCTAAA
CGGGCCAGCGGAATGTTTCTTAGCCTTAAATGACCTCGAGCTCCAGAAACGAGATGAACGCTAT
TTTGAGAAAGAACCAGAAAAAAGGGGGATTGATATTCTTAACTACCATTTTCATACGTGCGTGA
ATGCTGAAGAATTTGAACGGTCCAGAATCATTAAGTTCGTACCTCCAGATGCTTGCCGGTTCGA
GCTGATGCGTTTCAGAACCTCGAGTGAAGGGGATGAGCTTCCCTTCTCGGTGAAGTCCATAGTG
ACTGTCCAGGGAGCCTATGTGGAGCTGCAGGCCTTTGTCAACATGACCCCAGCAGTTCAGAGGT
CACCCCATGCAGGTTCCCTGAGGAGCTGTAACAATATCATGATTCATTTTCCCGTCCCAGCCCA
GTGGATCAAGGCCCTCTGGACCAGGAACCTTCAGAGGCAGAAGTCCCTGAAAGCCAAAATGAAC
CGTCGGGCATGCCTGGGGAGTTTACAGGGGCCTGAATTGGAACCTGTCATTCAGGTCACTGTGG
GGTCAGCAAAATATGAGAGTGCCTACCGGGCTGTGGTGTGGAAGATAGATCGACTCCCGGACAA
AAACACAAGTCCCGATCAGCCCCATTGTCTGTCATACAAACTAGAACTTGGGTCAGACCAGGAG
GTTCCTTCAGATTGGGATCCATTTGCTACCGTCCAGTTTTCCATGTCTGAAGCCTGTGCCTCCA
GGACAGAAGTGAGGTCTCTGGGAGTGGAGAGTGACGCCCAGCCTCAGAAGCATGTGTGTCAGCG
AGCTTGCTACAACATCCAGGTTGAAATAGAAAAGAAGTGGATTCAAATAGATGGAGAGGACCCA
GATAAAGCTGGTGGCTGTGTGACTCAGTAAACAATGGCGCCCCTTGGGTCAAATGCAGAACCGA
CACACAGGGCAGGAAGTTCTGTTGCTGTATGGTAGGACTGAGTAGCAGCTTTAGGCCAGAGATC
CAGTGGTGAGTTCCAAAGCAGGCCATGTGCATGTGACCCTTCTGATGCCCTGGATTGTGTCTGG
GACTCGTACCAGATACATCATGTTGAAACCTGGAGGCGCTGCTGTCTGACATGAGACCTGCTGG
CCAGTTTGGCTGAAGGGTACTTGGGTTTGGATGACTCAGTGACTTTGTTTTCATAACCTGAGTT
AGAGGATTCCCTGTCTCTACTTGCTCTCTGTGTGGAACAGTTCGAGAAGAGGAGAAGAGTTAGG
TATGACCTTGTTGGAGGGAGTGTCACTGGGGCTAGGCTTTGAGGTTGTAAAAGCCCAAGCGAGG
CCCAGTGTCTCTGTCTCTGTCTCTGTTTCTGTCTGTCTCTCTGTCTTTCTGTCTCTTTGTCTCT
GTCTCTCTGTCTTTCTGTTTCTCTGTCTGTCTGTCTCTCTCTTTCCCTGTGTGTGTGTCTGTCT
CTCTCTGTCTCTCTGCTGCCGCCTTCTTCTTCCTCCTCCTCTTCCTCCTCCTTTCTTCT

hide sequence

RefSeq Acc Id:

XM_006239743 ⟹ XP_006239805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	11,596,726 - 11,646,098 (-)	NCBI
mRatBN7.2	6	5,843,186 - 5,892,557 (-)	NCBI
Rnor_6.0	6	12,332,465 - 12,379,670 (+)	NCBI
Rnor_5.0	6	22,295,409 - 22,342,414 (+)	NCBI

Sequence:

show sequence

CTTCTTCCCTTGTGTGGATGGCGGTGCCCATGAGTCGGAGCCCCAGCAGCACTGCAGACAATGT
CCCTGACTCTTTGACCAGACCACAAGCCCATCTTGAAGATGTGTTCTACAAACCCAGGCAGCTG
GGTCACCTTTGACGATGACTCTCTTTTTCAGTCTTCTCCGAAGAAAAAGGATTTATCTCTGGAG
ACTCAAGGTGTTTGCAGACCAAATGGACTGAAGCTGGACCTTCCTGGCCTCAGGGACCTTCCCA
ATACCCCCTCCTCCACCGGCAGCACCCCTTTGTCCTCTCCCATGGTGGACTTTTACTTCAGTCC
AGGGCCTCCAAGCAACTCGCCTCTTTCTACACCCACCAAAGACTTCCCGGGGTTCCCTGGCATC
CCTAAAGCGGGGACACATGTGCTTTATCCTATTCCAGAGTGTTCTTCAAGCGGTCCCCCCACAA
CAGCGGGAGGAGCAGGTCCCCCGTTATCACTTACTAAGCCAACCTGCTCACCCCATGTATCGTT
ACCCAGTGGCCACTCGCACACCCAGCTGACTCCCACAGCGGGTCTTACAGAAGACGCCAGCCCT
CGGGGGGTCCAAAGCGAGGCTCGACAGTTCGAGTATTTTCAGGATGACTGTGCTTTTTCCAACC
CATTTTGGAAAGATGAAGGTGGCAACTCTCAGTTTCCCTTTGACTCCCTGGCAAGCAGAAAGCT
GTTCTCACCAAGGGACAAGGAGGTACCTGACGATCAAAAAAGCCTAAACCAGTGCTCATTGAAC
TACATCTGTGAGAAGCTCGAACACTTGCAGTCAGCGGAGACCCAAGACCCTCTTGGAAACTTGT
CTATGCAGAGCTCGTACGCTGGAGGCACATTCTCTTTTGTCCCACACACCCTCTTCCGGAGTCA
GCCCAAAGCTGGATGGTCCTTCATGTTGAGGATTCCTGAGAAGAAGAACATGATGTCTTCCCGG
CAGTGGGGACCCATTTTCCTAAAGGTTCTTCCCGGCGGGATCCTGCAGATGTACTATGAGAAGG
GGCTGGAAAAACCATTCAAAGAGTTCCAGCTCAATCCGCATTGCAGACTCTCGGAACCCAAACT
GGAGAACTTCAGCATGGCAGGGAAGATCCACACTGTGAAGGTAGAGCACGTGTCTTACTCCGAG
AAAAGGAAATACCATTCCAAGGTGGAGGTGGTTCACGAGCCCGAGGTGGAGCAGATGCTGAAGC
TAGGGTCCACGGAACACCGTGACTTCCTTGAATTTCTGACTACTGTGGAAGAGGAGCTAGTAAA
GCTGCCGGCTACGGCAAAACCGAAGAACAAAATCTATGAGGAGCAAGAGATTCACCTGGACATT
CTGGACAGCTTCTGGGGCAAAGTGACCAAGGAAGAGGGCAAGCTGGTCGAGAGCGCTGTGCTAA
CTCAGGTCTGCTGCCTCTGCTTTCTAAACGGGCCAGCGGAATGTTTCTTAGCCTTAAATGACCT
CGAGCTCCAGAAACGAGATGAACGCTATTTTGAGAAAGAACCAGAAAAAAGGGGGATTGATATT
CTTAACTACCATTTTCATACGTGCGTGAATGCTGAAGAATTTGAACGGTCCAGAATCATTAAGT
TCGTACCTCCAGATGCTTGCCGGTTCGAGCTGATGCGTTTCAGAACCTCGAGTGAAGGGGATGA
GCTTCCCTTCTCGGTGAAGTCCATAGTGACTGTCCAGGGAGCCTATGTGGAGCTGCAGGCCTTT
GTCAACATGACCCCAGCAGTTCAGAGGTCACCCCATGCAGGTTCCCTGAGGAGCTGTAACAATA
TCATGATTCATTTTCCCGTCCCAGCCCAGTGGATCAAGGCCCTCTGGACCAGGAACCTTCAGAG
GCAGAAGTCCCTGAAAGCCAAAATGAACCGTCGGGCATGCCTGGGGAGTTTACAGGGGCCTGAA
TTGGAACCTGTCATTCAGGTCACTGTGGGGTCAGCAAAATATGAGAGTGCCTACCGGGCTGTGG
TGTGGAAGATAGATCGACTCCCGGACAAAAACACAAGTCCCGATCAGCCCCATTGTCTGTCATA
CAAACTAGAACTTGGGTCAGACCAGGAGGTTCCTTCAGATTGGGATCCATTTGCTACCGTCCAG
TTTTCCATGTCTGAAGCCTGTGCCTCCAGGACAGAAGTGAGGTCTCTGGGAGTGGAGAGTGACG
CCCAGCCTCAGAAGCATGTGTGTCAGCGAGCTTGCTACAACATCCAGGTTGAAATAGAAAAGAA
GTGGATTCAAATAGATGGAGAGGACCCAGATAAAGCTGGTGGCTGTGTGACTCAGTAAACAATG
GCGCCCCTTGGGTCAAATGCAGAACCGACACACAGGGCAGGAAGTTCTGTTGCTGTATGGTAGG
ACTGAGTAGCAGCTTTAGGCCAGAGATCCAGTGGTGAGTTCCAAAGCAGGCCATGTGCATGTGA
CCCTTCTGATGCCCTGGATTGTGTCTGGGACTCGTACCAGATACATCATGTTGAAACCTGGAGG
CGCTGCTGTCTGACATGAGACCTGCTGGCCAGTTTGGCTGAAGGGTACTTGGGTTTGGATGACT
CAGTGACTTTGTTTTCATAACCTGAGTTAGAGGATTCCCTGTCTCTACTTGCTCTCTGTGTGGA
ACAGTTCGAGAAGAGGAGAAGAGTTAGGTATGACCTTGTTGGAGGGAGTGTCACTGGGGCTAGG
CTTTGAGGTTGTAAAAGCCCAAGCGAGGCCCAGTGTCTCTGTCTCTGTCTCTGTTTCTGTCTGT
CTCTCTGTCTTTCTGTCTCTTTGTCTCTGTCTCTCTGT

hide sequence

RefSeq Acc Id:

XM_006239744 ⟹ XP_006239806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	11,596,726 - 11,614,085 (-)	NCBI
mRatBN7.2	6	5,843,186 - 5,859,569 (-)	NCBI
Rnor_6.0	6	12,364,476 - 12,379,670 (+)	NCBI
Rnor_5.0	6	22,295,409 - 22,342,414 (+)	NCBI

Sequence:

show sequence

TCCTCAGCCTGGGTATCACTATTTTTTATTTACTTAAAGCAATTCATGGTTATCTCCCCAGTTA
GACAAGAGTTTGATTTTTCGACTGTCAGAAAGAGTAATGTATTTTTTTTTTTTAGGTTTGCTGT
GACCTATTGTTGCTCACACACCCTTTAGAACAGGGTAGGGATAATTGTTGTGGAGATCCCCTAG
TTTGGAGGGTGTTAAACTCTTAGCAGATTCTAAATGCACCTTATCAAACTCAAACCATGGTTTT
CTGTAGCCCTGTTTTTCCTTGTGTGAATGGCCAAATGCAGCTACGTTTAACTTGTTCTCAAGTT
GAGTCATCCCAAAGCTGCTTTGAAACTGGCTACTGTGAAGAGAATGTTGTTTTTCAGAGGAGCA
AACATCTCCCTTAGGAATCTTAAATATCAAAAATAGGTTTCTAGAAATCTCCGCCTTAATAAAT
TTTTTATCTAGACAGAATCTTGGTGTCCTGCCCTATTTCTAGGCCTGATAGGAGCTGTGTTCTG
GAAGTTTGCTCATGATCCAGTTGGACTGCACACAGACTTCTGGAGCGCTGAAGCCACAGGAAGG
CATGGCCTCCCTGGCAAGGAAGGAGCCCGTCAGACAGAGGAATCTTAGCATCTGAAGAAAACAG
CAAAGGCAGGAAGGAGACAGGCGTTCCTGGGCCCTGAACTAACTAGATTCTGGACCTAGGAAGA
TGCCTAAATGCTGTTGTTGGGAAGTTTAAATGAGATGTTGCTTATGCAGTGACGGCAACTGGAG
GAAGGGGCGTCAGGAGGGGCAGGAGCTTGACCTGATCCAGTGTGGCTGCCAACGTGGGGTGGGA
GTGGGGAGGGACGAGCGGTAGCAAGCGCTTGGCAGGTGTGGGGCGGGGCGGTCAGCCCAAAGAA
AGTAAAGGGAGACTGCAGCCTTAATCTCTGAAGTAGCTGGGGGCAGGAGTCACCGAAGGAAGAT
TGCTGCCAAGTCCGCTGGTGCTAACCTCCCCTGCCCAGGGCCTTCTGAGCCAAGCTCTGGGGTC
GGGGTGGGGTTAGAGGAAGGAAAGCATTTGGATGGAGCTAGCTCTGGTTGTCAACTTTGGGCTC
ACTGACTGGAGGGGGCTGTGGGACAGAAAGATGAGGTCGTATCGAGCGAGGAGCGGCAGAGAGA
CAATGTCCCTGACTCTTTGACCAGACCACAAGCCCATCTTGAAGATGTGTTCTACAAACCCAGG
CAGCTGGGTCACCTTTGACGATGACTCTCTTTTTCAGTCTTCTCCGAAGAAAAAGGATTTATCT
CTGGAGACTCAAGGTGTTTGCAGACCAAATGGACTGAAGCTGGACCTTCCTGGCCTCAGGGACC
TTCCCAATACCCCCTCCTCCACCGGCAGCACCCCTTTGTCCTCTCCCATGGTGGACTTTTACTT
CAGTCCAGGGCCTCCAAGCAACTCGCCTCTTTCTACACCCACCAAAGACTTCCCGGGGTTCCCT
GGCATCCCTAAAGCGGGGACACATGTGCTTTATCCTATTCCAGAGTGTTCTTCAAGCGGTCCCC
CCACAACAGCGGGAGGAGCAGGTCCCCCGTTATCACTTACTAAGCCAACCTGCTCACCCCATGT
ATCGTTACCCAGTGGCCACTCGCACACCCAGCTGACTCCCACAGCGGGTCTTACAGAAGACGCC
AGCCCTCGGGGGGTCCAAAGCGAGGCTCGACAGTTCGAGTATTTTCAGGATGACTGTGCTTTTT
CCAACCCATTTTGGAAAGATGAAGGTGGCAACTCTCAGTTTCCCTTTGACTCCCTGGCAAGCAG
AAAGCTGTTCTCACCAAGGGACAAGGAGGTACCTGACGATCAAAAAAGCCTAAACCAGTGCTCA
TTGAACTACATCTGTGAGAAGCTCGAACACTTGCAGTCAGCGGAGACCCAAGACCCTCTTGGAA
ACTTGTCTATGCAGAGCTCGTACGCTGGAGGCACATTCTCTTTTGTCCCACACACCCTCTTCCG
GAGTCAGCCCAAAGCTGGATGGTCCTTCATGTTGAGGATTCCTGAGAAGAAGAACATGATGTCT
TCCCGGCAGTGGGGACCCATTTTCCTAAAGGTTCTTCCCGGCGGGATCCTGCAGATGTACTATG
AGAAGGGGCTGGAAAAACCATTCAAAGAGTTCCAGCTCAATCCGCATTGCAGACTCTCGGAACC
CAAACTGGAGAACTTCAGCATGGCAGGGAAGATCCACACTGTGAAGGTAGAGCACGTGTCTTAC
TCCGAGAAAAGGAAATACCATTCCAAGGTGGAGGTGGTTCACGAGCCCGAGGTGGAGCAGATGC
TGAAGCTAGGGTCCACGGAACACCGTGACTTCCTTGAATTTCTGACTACTGTGGAAGAGGAGCT
AGTAAAGCTGCCGGCTACGGCAAAACCGAAGAACAAAATCTATGAGGAGCAAGAGATTCACCTG
GACATTCTGGACAGCTTCTGGGGCAAAGTGACCAAGGAAGAGGGCAAGCTGGTCGAGAGCGCTG
TGCTAACTCAGGTCTGCTGCCTCTGCTTTCTAAACGGGCCAGCGGAATGTTTCTTAGCCTTAAA
TGACCTCGAGCTCCAGAAACGAGATGAACGCTATTTTGAGAAAGAACCAGAAAAAAGGGGGATT
GATATTCTTAACTACCATTTTCATACGTGCGTGAATGCTGAAGAATTTGAACGGTCCAGAATCA
TTAAGTTCGTACCTCCAGATGCTTGCCGGTTCGAGCTGATGCGTTTCAGAACCTCGAGTGAAGG
GGATGAGCTTCCCTTCTCGGTGAAGTCCATAGTGACTGTCCAGGGAGCCTATGTGGAGCTGCAG
GCCTTTGTCAACATGACCCCAGCAGTTCAGAGGTCACCCCATGCAGGTTCCCTGAGGAGCTGTA
ACAATATCATGATTCATTTTCCCGTCCCAGCCCAGTGGATCAAGGCCCTCTGGACCAGGAACCT
TCAGAGGCAGAAGTCCCTGAAAGCCAAAATGAACCGTCGGGCATGCCTGGGGAGTTTACAGGGG
CCTGAATTGGAACCTGTCATTCAGGTCACTGTGGGGTCAGCAAAATATGAGAGTGCCTACCGGG
CTGTGGTGTGGAAGATAGATCGACTCCCGGACAAAAACACAAGTCCCGATCAGCCCCATTGTCT
GTCATACAAACTAGAACTTGGGTCAGACCAGGAGGTTCCTTCAGATTGGGATCCATTTGCTACC
GTCCAGTTTTCCATGTCTGAAGCCTGTGCCTCCAGGACAGAAGTGAGGTCTCTGGGAGTGGAGA
GTGACGCCCAGCCTCAGAAGCATGTGTGTCAGCGAGCTTGCTACAACATCCAGGTTGAAATAGA
AAAGAAGTGGATTCAAATAGATGGAGAGGACCCAGATAAAGCTGGTGGCTGTGTGACTCAGTAA
ACAATGGCGCCCCTTGGGTCAAATGCAGAACCGACACACAGGGCAGGAAGTTCTGTTGCTGTAT
GGTAGGACTGAGTAGCAGCTTTAGGCCAGAGATCCAGTGGTGAGTTCCAAAGCAGGCCATGTGC
ATGTGACCCTTCTGATGCCCTGGATTGTGTCTGGGACTCGTACCAGATACATCATGTTGAAACC
TGGAGGCGCTGCTGTCTGACATGAGACCTGCTGGCCAGTTTGGCTGAAGGGTACTTGGGTTTGG
ATGACTCAGTGACTTTGTTTTCATAACCTGAGTTAGAGGATTCCCTGTCTCTACTTGCTCTCTG
TGTGGAACAGTTCGAGAAGAGGAGAAGAGTTAGGTATGACCTTGTTGGAGGGAGTGTCACTGGG
GCTAGGCTTTGAGGTTGTAAAAGCCCAAGCGAGGCCCAGTGTCTCTGTCTCTGTCTCTGTTTCT
GTCTGTCTCTCTGTCTTTCTGTCTCTTTGTCTCTGTCTCTCTGT

hide sequence

RefSeq Acc Id:

XM_008764481 ⟹ XP_008762703

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	11,596,726 - 11,615,669 (-)	NCBI
mRatBN7.2	6	5,843,186 - 5,862,131 (-)	NCBI
Rnor_6.0	6	12,362,271 - 12,379,670 (+)	NCBI

Sequence:

show sequence

AATTTTCGAAGGTGCTGGGAGACTGTGCTGTGGTTTAATATTGTGCAAATGGTATTTCCTGTCA
CATGAGTAAAATACGCATGTTTGTGATCAAATAGTATGGAGTGCACAGCATATGTGCTAATACT
ACGGTTCGTGCAGACTTGGCCTCCGAGTGACCTAGATGGGGGTGAGGCATGCTCCTTTTTGTTT
TTGTCTCAAACTCTTCAAGGGAAAACTTTCGTGGGACTGATCACCACACTATCACAGCAAATGT
TTTGGGGGGGAATTCTTCGTGATGCCCTCAAGGTGGGCTTGGCTTCCCTAGTACCAACCCTGTA
ACAGCAGCTAGTGAGGGTCCCAGGCCTTCCAGAGAACACACCCAGAGACTTCACAAAGGCAGCC
AGCGTCCATCTGGTTACAAAGTTGCTTTGGAGGAGTTTGGCATGCAGGAATCCGAGAATTCCTT
ATTTGGGAGAGCAGCCAATGAAACCACAGAGATATTGACCTCAAGACATTCTTTCTCTAGATTA
TTCAGCACTGTTGCAGAGCAAAAAGCCAGAGCCAGAGATGTTCAGCCTCGGTAAAAGCCCAGAG
GCTGGAGCGGGAGTCTGCCTGACCGTGACTATGGGGTCCAGCTGACAGCTTCCAGGGACAGCTT
CAGCATCAGTCCCTCAACTTCTGGCACATTCAGAGGAGCAAGATATTAGGGTCCATGTGAAATG
AGGCCGTTCCTCTCCACAGACCGGCAATGATGTGGAGACAAAGCCTTAGCCACAAGTGGTCTGG
AATGTTACTTTGCCAGCTAAAGGCCACCAGTCGGATTTCAACAATCTGCAGGAGATGGTAGGAC
TCTGTATGTTCCTTTATGGAAAGGTTTCTGAAGAAAAGTCAAGGAAAAGGAAGAGACAATGTCC
CTGACTCTTTGACCAGACCACAAGCCCATCTTGAAGATGTGTTCTACAAACCCAGGCAGCTGGG
TCACCTTTGACGATGACTCTCTTTTTCAGTCTTCTCCGAAGAAAAAGGATTTATCTCTGGAGAC
TCAAGGTGTTTGCAGACCAAATGGACTGAAGCTGGACCTTCCTGGCCTCAGGGACCTTCCCAAT
ACCCCCTCCTCCACCGGCAGCACCCCTTTGTCCTCTCCCATGGTGGACTTTTACTTCAGTCCAG
GGCCTCCAAGCAACTCGCCTCTTTCTACACCCACCAAAGACTTCCCGGGGTTCCCTGGCATCCC
TAAAGCGGGGACACATGTGCTTTATCCTATTCCAGAGTGTTCTTCAAGCGGTCCCCCCACAACA
GCGGGAGGAGCAGGTCCCCCGTTATCACTTACTAAGCCAACCTGCTCACCCCATGTATCGTTAC
CCAGTGGCCACTCGCACACCCAGCTGACTCCCACAGCGGGTCTTACAGAAGACGCCAGCCCTCG
GGGGGTCCAAAGCGAGGCTCGACAGTTCGAGTATTTTCAGGATGACTGTGCTTTTTCCAACCCA
TTTTGGAAAGATGAAGGTGGCAACTCTCAGTTTCCCTTTGACTCCCTGGCAAGCAGAAAGCTGT
TCTCACCAAGGGACAAGGAGGTACCTGACGATCAAAAAAGCCTAAACCAGTGCTCATTGAACTA
CATCTGTGAGAAGCTCGAACACTTGCAGTCAGCGGAGACCCAAGACCCTCTTGGAAACTTGTCT
ATGCAGAGCTCGTACGCTGGAGGCACATTCTCTTTTGTCCCACACACCCTCTTCCGGAGTCAGC
CCAAAGCTGGATGGTCCTTCATGTTGAGGATTCCTGAGAAGAAGAACATGATGTCTTCCCGGCA
GTGGGGACCCATTTTCCTAAAGGTTCTTCCCGGCGGGATCCTGCAGATGTACTATGAGAAGGGG
CTGGAAAAACCATTCAAAGAGTTCCAGCTCAATCCGCATTGCAGACTCTCGGAACCCAAACTGG
AGAACTTCAGCATGGCAGGGAAGATCCACACTGTGAAGGTAGAGCACGTGTCTTACTCCGAGAA
AAGGAAATACCATTCCAAGGTGGAGGTGGTTCACGAGCCCGAGGTGGAGCAGATGCTGAAGCTA
GGGTCCACGGAACACCGTGACTTCCTTGAATTTCTGACTACTGTGGAAGAGGAGCTAGTAAAGC
TGCCGGCTACGGCAAAACCGAAGAACAAAATCTATGAGGAGCAAGAGATTCACCTGGACATTCT
GGACAGCTTCTGGGGCAAAGTGACCAAGGAAGAGGGCAAGCTGGTCGAGAGCGCTGTGCTAACT
CAGGTCTGCTGCCTCTGCTTTCTAAACGGGCCAGCGGAATGTTTCTTAGCCTTAAATGACCTCG
AGCTCCAGAAACGAGATGAACGCTATTTTGAGAAAGAACCAGAAAAAAGGGGGATTGATATTCT
TAACTACCATTTTCATACGTGCGTGAATGCTGAAGAATTTGAACGGTCCAGAATCATTAAGTTC
GTACCTCCAGATGCTTGCCGGTTCGAGCTGATGCGTTTCAGAACCTCGAGTGAAGGGGATGAGC
TTCCCTTCTCGGTGAAGTCCATAGTGACTGTCCAGGGAGCCTATGTGGAGCTGCAGGCCTTTGT
CAACATGACCCCAGCAGTTCAGAGGTCACCCCATGCAGGTTCCCTGAGGAGCTGTAACAATATC
ATGATTCATTTTCCCGTCCCAGCCCAGTGGATCAAGGCCCTCTGGACCAGGAACCTTCAGAGGC
AGAAGTCCCTGAAAGCCAAAATGAACCGTCGGGCATGCCTGGGGAGTTTACAGGGGCCTGAATT
GGAACCTGTCATTCAGGTCACTGTGGGGTCAGCAAAATATGAGAGTGCCTACCGGGCTGTGGTG
TGGAAGATAGATCGACTCCCGGACAAAAACACAAGTCCCGATCAGCCCCATTGTCTGTCATACA
AACTAGAACTTGGGTCAGACCAGGAGGTTCCTTCAGATTGGGATCCATTTGCTACCGTCCAGTT
TTCCATGTCTGAAGCCTGTGCCTCCAGGACAGAAGTGAGGTCTCTGGGAGTGGAGAGTGACGCC
CAGCCTCAGAAGCATGTGTGTCAGCGAGCTTGCTACAACATCCAGGTTGAAATAGAAAAGAAGT
GGATTCAAATAGATGGAGAGGACCCAGATAAAGCTGGTGGCTGTGTGACTCAGTAAACAATGGC
GCCCCTTGGGTCAAATGCAGAACCGACACACAGGGCAGGAAGTTCTGTTGCTGTATGGTAGGAC
TGAGTAGCAGCTTTAGGCCAGAGATCCAGTGGTGAGTTCCAAAGCAGGCCATGTGCATGTGACC
CTTCTGATGCCCTGGATTGTGTCTGGGACTCGTACCAGATACATCATGTTGAAACCTGGAGGCG
CTGCTGTCTGACATGAGACCTGCTGGCCAGTTTGGCTGAAGGGTACTTGGGTTTGGATGACTCA
GTGACTTTGTTTTCATAACCTGAGTTAGAGGATTCCCTGTCTCTACTTGCTCTCTGTGTGGAAC
AGTTCGAGAAGAGGAGAAGAGTTAGGTATGACCTTGTTGGAGGGAGTGTCACTGGGGCTAGGCT
TTGAGGTTGTAAAAGCCCAAGCGAGGCCCAGTGTCTCTGTCTCTGTCTCTGTTTCTGTCTGTCT
CTCTGTCTTTCTGTCTCTTTGTCTCTGTCTCTCTGT

hide sequence

RefSeq Acc Id:

XM_039112436 ⟹ XP_038968364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	11,596,726 - 11,615,669 (-)	NCBI
mRatBN7.2	6	5,843,186 - 5,862,131 (-)	NCBI

RefSeq Acc Id:

XM_063262036 ⟹ XP_063118106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	11,596,726 - 11,615,669 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_891999	(Get FASTA)	NCBI Sequence Viewer
	XP_006239805	(Get FASTA)	NCBI Sequence Viewer
	XP_006239806	(Get FASTA)	NCBI Sequence Viewer
	XP_008762703	(Get FASTA)	NCBI Sequence Viewer
	XP_038968364	(Get FASTA)	NCBI Sequence Viewer
	XP_063118106	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAQ17545	(Get FASTA)	NCBI Sequence Viewer
	EDM02620	(Get FASTA)	NCBI Sequence Viewer
	EDM02621	(Get FASTA)	NCBI Sequence Viewer
	EDM02622	(Get FASTA)	NCBI Sequence Viewer
	EDM02623	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022370.6
	ENSRNOP00000088331
	ENSRNOP00000088331.1

RefSeq Acc Id:

NP_891999 ⟸ NM_182954

- UniProtKB:

A6H9B6 (UniProtKB/TrEMBL), Q7TNJ9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCSTNPGSWVTFDDDSLFQSSPKKKDLSLETQGVCRPNGLKLDLPGLRDLPNTPSSTGSTPLSS
PMVDFYFSPGPPSNSPLSTPTKDFPGFPGIPKAGTHVLYPIPECSSSGPPTTAGGAGPPLSLTK
PTCSPHVSLPSGHSHTQLTPTAGLTEDASPRGVQSEARQFEYFQDDCAFSNPFWKDEGGNSQFP
FDSLASRKLFSPRDKEVPDDQKSLNQCSLNYICEKLEHLQSAETQDPLGNLSMQSSYAGGTFSF
VPHTLFRSQPKAGWSFMLRIPEKKNMMSSRQWGPIFLKVLPGGILQMYYEKGLEKPFKEFQLNP
HCRLSEPKLENFSMAGKIHTVKVEHVSYSEKRKYHSKVEVVHEPEVEQMLKLGSTEHRDFLEFL
TTVEEELVKLPATAKPKNKIYEEQEIHLDILDSFWGKVTKEEGKLVESAVLTQVCCLCFLNGPA
ECFLALNDLELQKRDERYFEKEPEKRGIDILNYHFHTCVNAEEFERSRIIKFVPPDACRFELMR
FRTSSEGDELPFSVKSIVTVQGAYVELQAFVNMTPAVQRSPHAGSLRSCNNIMIHFPVPAQWIK
ALWTRNLQRQKSLKAKMNRRACLGSLQGPELEPVIQVTVGSAKYESAYRAVVWKIDRLPDKNTS
PDQPHCLSYKLELGSDQEVPSDWDPFATVQFSMSEACASRTEVRSLGVESDAQPQKHVCQRACY
NIQVEIEKKWIQIDGEDPDKAGGCVTQ

hide sequence

RefSeq Acc Id:	XP_006239805 ⟸ XM_006239743
- Peptide Label:	isoform X1
- UniProtKB:	A6H9B6 (UniProtKB/TrEMBL), Q7TNJ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCSTNPGSWVTFDDDSLFQSSPKKKDLSLETQGVCRPNGLKLDLPGLRDLPNTPSSTGSTPLSS PMVDFYFSPGPPSNSPLSTPTKDFPGFPGIPKAGTHVLYPIPECSSSGPPTTAGGAGPPLSLTK PTCSPHVSLPSGHSHTQLTPTAGLTEDASPRGVQSEARQFEYFQDDCAFSNPFWKDEGGNSQFP FDSLASRKLFSPRDKEVPDDQKSLNQCSLNYICEKLEHLQSAETQDPLGNLSMQSSYAGGTFSF VPHTLFRSQPKAGWSFMLRIPEKKNMMSSRQWGPIFLKVLPGGILQMYYEKGLEKPFKEFQLNP HCRLSEPKLENFSMAGKIHTVKVEHVSYSEKRKYHSKVEVVHEPEVEQMLKLGSTEHRDFLEFL TTVEEELVKLPATAKPKNKIYEEQEIHLDILDSFWGKVTKEEGKLVESAVLTQVCCLCFLNGPA ECFLALNDLELQKRDERYFEKEPEKRGIDILNYHFHTCVNAEEFERSRIIKFVPPDACRFELMR FRTSSEGDELPFSVKSIVTVQGAYVELQAFVNMTPAVQRSPHAGSLRSCNNIMIHFPVPAQWIK ALWTRNLQRQKSLKAKMNRRACLGSLQGPELEPVIQVTVGSAKYESAYRAVVWKIDRLPDKNTS PDQPHCLSYKLELGSDQEVPSDWDPFATVQFSMSEACASRTEVRSLGVESDAQPQKHVCQRACY NIQVEIEKKWIQIDGEDPDKAGGCVTQ hide sequence

RefSeq Acc Id:	XP_006239806 ⟸ XM_006239744
- Peptide Label:	isoform X1
- UniProtKB:	A6H9B6 (UniProtKB/TrEMBL), Q7TNJ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCSTNPGSWVTFDDDSLFQSSPKKKDLSLETQGVCRPNGLKLDLPGLRDLPNTPSSTGSTPLSS PMVDFYFSPGPPSNSPLSTPTKDFPGFPGIPKAGTHVLYPIPECSSSGPPTTAGGAGPPLSLTK PTCSPHVSLPSGHSHTQLTPTAGLTEDASPRGVQSEARQFEYFQDDCAFSNPFWKDEGGNSQFP FDSLASRKLFSPRDKEVPDDQKSLNQCSLNYICEKLEHLQSAETQDPLGNLSMQSSYAGGTFSF VPHTLFRSQPKAGWSFMLRIPEKKNMMSSRQWGPIFLKVLPGGILQMYYEKGLEKPFKEFQLNP HCRLSEPKLENFSMAGKIHTVKVEHVSYSEKRKYHSKVEVVHEPEVEQMLKLGSTEHRDFLEFL TTVEEELVKLPATAKPKNKIYEEQEIHLDILDSFWGKVTKEEGKLVESAVLTQVCCLCFLNGPA ECFLALNDLELQKRDERYFEKEPEKRGIDILNYHFHTCVNAEEFERSRIIKFVPPDACRFELMR FRTSSEGDELPFSVKSIVTVQGAYVELQAFVNMTPAVQRSPHAGSLRSCNNIMIHFPVPAQWIK ALWTRNLQRQKSLKAKMNRRACLGSLQGPELEPVIQVTVGSAKYESAYRAVVWKIDRLPDKNTS PDQPHCLSYKLELGSDQEVPSDWDPFATVQFSMSEACASRTEVRSLGVESDAQPQKHVCQRACY NIQVEIEKKWIQIDGEDPDKAGGCVTQ hide sequence

RefSeq Acc Id:	XP_008762703 ⟸ XM_008764481
- Peptide Label:	isoform X1
- UniProtKB:	A6H9B6 (UniProtKB/TrEMBL), Q7TNJ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCSTNPGSWVTFDDDSLFQSSPKKKDLSLETQGVCRPNGLKLDLPGLRDLPNTPSSTGSTPLSS PMVDFYFSPGPPSNSPLSTPTKDFPGFPGIPKAGTHVLYPIPECSSSGPPTTAGGAGPPLSLTK PTCSPHVSLPSGHSHTQLTPTAGLTEDASPRGVQSEARQFEYFQDDCAFSNPFWKDEGGNSQFP FDSLASRKLFSPRDKEVPDDQKSLNQCSLNYICEKLEHLQSAETQDPLGNLSMQSSYAGGTFSF VPHTLFRSQPKAGWSFMLRIPEKKNMMSSRQWGPIFLKVLPGGILQMYYEKGLEKPFKEFQLNP HCRLSEPKLENFSMAGKIHTVKVEHVSYSEKRKYHSKVEVVHEPEVEQMLKLGSTEHRDFLEFL TTVEEELVKLPATAKPKNKIYEEQEIHLDILDSFWGKVTKEEGKLVESAVLTQVCCLCFLNGPA ECFLALNDLELQKRDERYFEKEPEKRGIDILNYHFHTCVNAEEFERSRIIKFVPPDACRFELMR FRTSSEGDELPFSVKSIVTVQGAYVELQAFVNMTPAVQRSPHAGSLRSCNNIMIHFPVPAQWIK ALWTRNLQRQKSLKAKMNRRACLGSLQGPELEPVIQVTVGSAKYESAYRAVVWKIDRLPDKNTS PDQPHCLSYKLELGSDQEVPSDWDPFATVQFSMSEACASRTEVRSLGVESDAQPQKHVCQRACY NIQVEIEKKWIQIDGEDPDKAGGCVTQ hide sequence

Ensembl Acc Id:

ENSRNOP00000022370 ⟸ ENSRNOT00000022370

RefSeq Acc Id:	XP_038968364 ⟸ XM_039112436
- Peptide Label:	isoform X2
- UniProtKB:	F1MAC6 (UniProtKB/TrEMBL), Q7TNJ9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000088331 ⟸ ENSRNOT00000118638

RefSeq Acc Id:	XP_063118106 ⟸ XM_063262036
- Peptide Label:	isoform X1
- UniProtKB:	A6H9B6 (UniProtKB/TrEMBL), Q7TNJ9 (UniProtKB/TrEMBL)

Protein Domains

MHD SHD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1MAC6-F1-model_v2	AlphaFold	F1MAC6	1-731	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694401

Promoter ID:

EPDNEW_R4925

Type:

initiation region

Name:

Ston1_1

Description:

stonin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	12,362,829 - 12,362,889	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:727878	AgrOrtholog
BioCyc Gene	G2FUF-38773	BioCyc
Ensembl Genes	ENSRNOG00000016688	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022370.7	UniProtKB/TrEMBL
	ENSRNOT00000118638	ENTREZGENE
	ENSRNOT00000118638.1	UniProtKB/TrEMBL
Gene3D-CATH	Mu homology domain, subdomain B	UniProtKB/TrEMBL
InterPro	Adaptor_comp_med_subunit	UniProtKB/TrEMBL
	AP2_Mu_C_sf	UniProtKB/TrEMBL
	MHD	UniProtKB/TrEMBL
	SHD	UniProtKB/TrEMBL
	Stonin	UniProtKB/TrEMBL
KEGG Report	rno:360202	UniProtKB/TrEMBL
NCBI Gene	360202	ENTREZGENE
PANTHER	AP COMPLEX SUBUNIT MU	UniProtKB/TrEMBL
Pfam	Adap_comp_sub	UniProtKB/TrEMBL
PhenoGen	Ston1	PhenoGen
PIRSF	Stonin	UniProtKB/TrEMBL
PROSITE	MHD	UniProtKB/TrEMBL
	SHD	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016688	RatGTEx
Superfamily-SCOP	AP50	UniProtKB/TrEMBL
UniProt	A0A8I6A974_RAT	UniProtKB/TrEMBL
	A6H9B6	ENTREZGENE, UniProtKB/TrEMBL
	F1MAC6	ENTREZGENE, UniProtKB/TrEMBL
	Q7TNJ9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-03-08	Ston1	stonin 1	Sblf	stoned B-like factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-08	Sblf	stoned B-like factor			Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar