Lrpprc (leucine-rich pentatricopeptide repeat containing) - Rat Genome Database

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Gene: Lrpprc (leucine-rich pentatricopeptide repeat containing) Rattus norvegicus
Analyze
Symbol: Lrpprc
Name: leucine-rich pentatricopeptide repeat containing
RGD ID: 1306575
Description: Predicted to enable beta-tubulin binding activity; nucleic acid binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in regulation of mitochondrial translation. Predicted to act upstream of or within negative regulation of mitochondrial RNA catabolic process. Predicted to be located in several cellular components, including condensed nuclear chromosome; mitochondrial nucleoid; and perinuclear region of cytoplasm. Predicted to be part of ribonucleoprotein complex. Predicted to be active in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in French Canadian Leigh disease and Leigh disease. Orthologous to human LRPPRC (leucine rich pentatricopeptide repeat containing); PARTICIPATES IN CRM1 export pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aconitine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 130 kDa leucine-rich protein; leucine rich protein 157; leucine-rich PPR motif-containing protein, mitochondrial; leucine-rich PPR-motif containing; leucine-rich protein 157; LOC313867; LRP 130; Lrp157; rLRP157
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8615,612,638 - 15,695,113 (+)NCBIGRCr8
mRatBN7.269,859,816 - 9,942,294 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl69,859,867 - 9,942,293 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx610,148,236 - 10,230,722 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0610,457,631 - 10,540,115 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.069,979,042 - 10,061,742 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.067,984,043 - 8,066,874 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl67,984,019 - 8,066,868 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.067,919,928 - 8,001,949 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.468,086,606 - 8,168,261 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.168,086,606 - 8,168,261 (-)NCBI
Celera69,581,533 - 9,663,935 (+)NCBICelera
Cytogenetic Map6q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3',5'-cyclic UMP  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aconitine  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
clozapine  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
ginsenoside Re  (ISO)
indometacin  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
morphine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (EXP,ISO)
rotenone  (EXP)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulindac  (EXP)
sunitinib  (ISO)
tanespimycin  (ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Defects in energy homeostasis in Leigh syndrome French Canadian variant through PGC-1alpha/LRP130 complex. Cooper MP, etal., Genes Dev. 2006 Nov 1;20(21):2996-3009. Epub 2006 Oct 18.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics. Mootha VK, etal., Proc Natl Acad Sci U S A. 2003 Jan 21;100(2):605-10. Epub 2003 Jan 14.
6. Postage for the messenger: designating routes for nuclear mRNA export. Natalizio BJ and Wente SR, Trends Cell Biol. 2013 Aug;23(8):365-73. doi: 10.1016/j.tcb.2013.03.006. Epub 2013 Apr 11.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12071956   PMID:12762840   PMID:12832482   PMID:14651853   PMID:15525270   PMID:17339062   PMID:18063578   PMID:18614015   PMID:19725078   PMID:19946888   PMID:21525035   PMID:21880015  
PMID:22045337   PMID:22658674   PMID:22681889   PMID:26316108  


Genomics

Comparative Map Data
Lrpprc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8615,612,638 - 15,695,113 (+)NCBIGRCr8
mRatBN7.269,859,816 - 9,942,294 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl69,859,867 - 9,942,293 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx610,148,236 - 10,230,722 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0610,457,631 - 10,540,115 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.069,979,042 - 10,061,742 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.067,984,043 - 8,066,874 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl67,984,019 - 8,066,868 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.067,919,928 - 8,001,949 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.468,086,606 - 8,168,261 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.168,086,606 - 8,168,261 (-)NCBI
Celera69,581,533 - 9,663,935 (+)NCBICelera
Cytogenetic Map6q12NCBI
LRPPRC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38243,886,224 - 43,996,265 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl243,886,224 - 43,996,226 (-)EnsemblGRCh38hg38GRCh38
GRCh37244,113,363 - 44,223,128 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36243,968,391 - 44,076,648 (-)NCBINCBI36Build 36hg18NCBI36
Build 34244,026,537 - 44,134,795NCBI
Celera243,952,087 - 44,062,100 (-)NCBICelera
Cytogenetic Map2p21NCBI
HuRef243,849,689 - 43,959,564 (-)NCBIHuRef
CHM1_1244,042,771 - 44,152,581 (-)NCBICHM1_1
T2T-CHM13v2.0243,891,557 - 44,001,630 (-)NCBIT2T-CHM13v2.0
Lrpprc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391785,012,675 - 85,098,214 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1785,012,675 - 85,098,217 (-)EnsemblGRCm39 Ensembl
GRCm381784,705,247 - 84,790,786 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1784,705,247 - 84,790,789 (-)EnsemblGRCm38mm10GRCm38
MGSCv371785,104,587 - 85,190,126 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361784,613,573 - 84,698,841 (-)NCBIMGSCv36mm8
Celera1789,073,226 - 89,158,633 (-)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1755.02NCBI
Lrpprc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544111,012,910 - 11,116,965 (-)NCBIChiLan1.0ChiLan1.0
LRPPRC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21282,421,380 - 82,530,685 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A82,425,351 - 82,535,405 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A43,975,949 - 44,083,846 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A44,914,578 - 45,021,434 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A44,914,578 - 45,021,434 (-)Ensemblpanpan1.1panPan2
LRPPRC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11046,325,312 - 46,438,376 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1046,327,223 - 46,438,342 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1046,188,975 - 46,300,206 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01047,205,831 - 47,317,113 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1047,203,961 - 47,317,132 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11046,914,258 - 47,025,488 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01047,203,848 - 47,313,376 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01047,387,584 - 47,498,808 (-)NCBIUU_Cfam_GSD_1.0
Lrpprc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629236,532,488 - 36,638,283 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365087,961,079 - 8,068,228 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRPPRC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl396,474,549 - 96,595,143 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1396,474,510 - 96,590,706 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23102,630,054 - 102,744,878 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRPPRC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11463,263,101 - 63,380,607 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604548,506,466 - 48,623,733 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrpprc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473825,338,098 - 25,452,676 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473825,340,588 - 25,452,593 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lrpprc
396 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:18
Interacting mature miRNAs:19
Transcripts:ENSRNOT00000008200
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat

Markers in Region
D6Got4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.269,892,700 - 9,892,994 (-)MAPPERmRatBN7.2
Rnor_6.068,033,341 - 8,033,634NCBIRnor6.0
Rnor_5.067,969,226 - 7,969,519UniSTSRnor5.0
RGSC_v3.468,135,903 - 8,136,197RGDRGSC3.4
RGSC_v3.468,135,904 - 8,136,197UniSTSRGSC3.4
RGSC_v3.168,135,903 - 8,136,197RGD
Celera69,614,357 - 9,614,650UniSTS
Cytogenetic Map6q12UniSTS
RH132068  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.269,890,527 - 9,890,736 (-)MAPPERmRatBN7.2
Rnor_6.068,035,599 - 8,035,807NCBIRnor6.0
Rnor_5.067,971,484 - 7,971,692UniSTSRnor5.0
RGSC_v3.468,138,162 - 8,138,370UniSTSRGSC3.4
Celera69,612,184 - 9,612,392UniSTS
Cytogenetic Map6q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000008200   ⟹   ENSRNOP00000008200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl69,859,867 - 9,942,293 (+)Ensembl
Rnor_6.0 Ensembl67,984,019 - 8,066,868 (-)Ensembl
RefSeq Acc Id: NM_001008519   ⟹   NP_001008519
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8615,612,638 - 15,695,113 (+)NCBI
mRatBN7.269,859,816 - 9,942,294 (+)NCBI
Rnor_6.067,984,043 - 8,066,874 (-)NCBI
Rnor_5.067,919,928 - 8,001,949 (-)NCBI
RGSC_v3.468,086,606 - 8,168,261 (-)RGD
Celera69,581,533 - 9,663,935 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001008519 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAQ74626 (Get FASTA)   NCBI Sequence Viewer  
  EDM02689 (Get FASTA)   NCBI Sequence Viewer  
  EDM02690 (Get FASTA)   NCBI Sequence Viewer  
  EDM02691 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000008200
  ENSRNOP00000008200.6
GenBank Protein Q5SGE0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001008519   ⟸   NM_001008519
- Peptide Label: precursor
- UniProtKB: Q5SGE0 (UniProtKB/Swiss-Prot),   A6H9I4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000008200   ⟸   ENSRNOT00000008200
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SGE0-F1-model_v2 AlphaFold Q5SGE0 1-1392 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694377
Promoter ID:EPDNEW_R4902
Type:initiation region
Name:Lrpprc_1
Description:leucine-rich pentatricopeptide repeat containing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.068,066,908 - 8,066,968EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306575 AgrOrtholog
BioCyc Gene G2FUF-38647 BioCyc
Ensembl Genes ENSRNOG00000005877 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008200 ENTREZGENE
  ENSRNOT00000008200.7 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro LRP130 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pentatricopeptide_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PPR_long UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:313867 UniProtKB/Swiss-Prot
NCBI Gene 313867 ENTREZGENE
PANTHER LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR46669 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PPR_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PPR_long UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lrpprc PhenoGen
PROSITE PPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005877 RatGTEx
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6H9I4 ENTREZGENE, UniProtKB/TrEMBL
  A6H9I5_RAT UniProtKB/TrEMBL
  A6H9I6_RAT UniProtKB/TrEMBL
  F1LM33_RAT UniProtKB/TrEMBL
  LPPRC_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-02 Lrpprc  leucine-rich pentatricopeptide repeat containing  Lrpprc  leucine-rich PPR-motif containing  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Lrpprc  leucine-rich PPR-motif containing  Lrpprc_predicted  leucine-rich PPR-motif containing (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Lrpprc_predicted  leucine-rich PPR-motif containing (predicted)      Symbol and Name status set to approved 70820 APPROVED