Camkmt (calmodulin-lysine N-methyltransferase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Camkmt (calmodulin-lysine N-methyltransferase) Rattus norvegicus
Analyze
Symbol: Camkmt
Name: calmodulin-lysine N-methyltransferase
RGD ID: 1310453
Description: Predicted to enable calmodulin-lysine N-methyltransferase activity and heat shock protein binding activity. Predicted to act upstream of or within mitochondrion organization and peptidyl-lysine methylation. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be part of protein-containing complex. Orthologous to human CAMKMT (calmodulin-lysine N-methyltransferase); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CaM KMT; CLNMT; hypothetical protein LOC299521; LOC299521; RGD1310453; similar to hypothetical protein FLJ23451
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.269,198,945 - 9,580,200 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl69,198,947 - 9,580,242 (-)Ensembl
Rnor_6.068,346,645 - 8,729,773 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl68,669,722 - 8,729,771 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.068,278,834 - 8,657,214 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.468,448,187 - 8,852,940 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.168,792,850 - 8,852,924 (+)NCBI
Celera68,924,596 - 9,304,351 (-)NCBICelera
Cytogenetic Map6q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
nucleoplasm  (IEA,ISO)
protein-containing complex  (IEA,ISO)

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:23349634   PMID:26247364  


Genomics

Comparative Map Data
Camkmt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.269,198,945 - 9,580,200 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl69,198,947 - 9,580,242 (-)Ensembl
Rnor_6.068,346,645 - 8,729,773 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl68,669,722 - 8,729,771 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.068,278,834 - 8,657,214 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.468,448,187 - 8,852,940 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.168,792,850 - 8,852,924 (+)NCBI
Celera68,924,596 - 9,304,351 (-)NCBICelera
Cytogenetic Map6q12NCBI
CAMKMT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38244,361,947 - 44,772,592 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl244,361,947 - 44,772,592 (+)EnsemblGRCh38hg38GRCh38
GRCh37244,589,086 - 44,999,731 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36244,442,607 - 44,853,233 (+)NCBINCBI36hg18NCBI36
Celera244,427,993 - 44,838,447 (+)NCBI
Cytogenetic Map2p21NCBI
HuRef244,325,697 - 44,737,586 (+)NCBIHuRef
CHM1_1244,516,726 - 44,929,656 (+)NCBICHM1_1
T2T-CHM13v2.0244,367,249 - 44,777,914 (+)NCBI
Camkmt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391785,397,989 - 85,766,017 (+)NCBIGRCm39mm39
GRCm39 Ensembl1785,397,980 - 85,766,016 (+)Ensembl
GRCm381785,090,561 - 85,458,589 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1785,090,552 - 85,458,588 (+)EnsemblGRCm38mm10GRCm38
MGSCv371785,490,040 - 85,857,920 (+)NCBIGRCm37mm9NCBIm37
MGSCv361784,998,917 - 85,366,921 (+)NCBImm8
Celera1789,452,326 - 89,820,172 (+)NCBICelera
Cytogenetic Map17E4NCBI
Camkmt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544111,454,345 - 11,825,211 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544111,453,939 - 11,830,893 (+)NCBIChiLan1.0ChiLan1.0
CAMKMT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A45,398,042 - 45,809,218 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A45,398,350 - 45,808,747 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A44,463,474 - 44,876,680 (+)NCBIMhudiblu_PPA_v0panPan3
CAMKMT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11046,792,795 - 47,185,951 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1046,792,936 - 47,185,416 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1046,654,374 - 47,043,719 (+)NCBI
ROS_Cfam_1.01047,672,695 - 48,062,804 (+)NCBI
ROS_Cfam_1.0 Ensembl1047,672,807 - 48,062,765 (+)Ensembl
UMICH_Zoey_3.11047,379,747 - 47,771,262 (+)NCBI
UNSW_CanFamBas_1.01047,670,795 - 48,060,612 (+)NCBI
UU_Cfam_GSD_1.01047,853,469 - 48,243,515 (+)NCBI
Camkmt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629235,836,865 - 36,208,927 (-)NCBI
SpeTri2.0NW_0049365087,265,496 - 7,637,513 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMKMT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl395,688,400 - 96,091,958 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1395,688,400 - 96,092,028 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23101,778,033 - 101,836,744 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAMKMT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11462,457,493 - 62,879,767 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604549,006,943 - 49,425,038 (+)NCBIVero_WHO_p1.0
Camkmt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473825,835,163 - 26,250,729 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473825,835,123 - 26,251,254 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D6Rat214  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.269,311,124 - 9,311,366 (-)MAPPERmRatBN7.2
Rnor_6.068,612,818 - 8,613,059NCBIRnor6.0
Rnor_5.068,544,973 - 8,545,214UniSTSRnor5.0
RGSC_v3.468,737,778 - 8,738,020RGDRGSC3.4
RGSC_v3.468,737,779 - 8,738,020UniSTSRGSC3.4
RGSC_v3.168,737,778 - 8,738,020RGD
Celera69,036,212 - 9,036,450UniSTS
SHRSP x BN Map62.2599UniSTS
SHRSP x BN Map62.2599RGD
Cytogenetic Map6q12UniSTS
RH136925  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.269,199,028 - 9,199,194 (-)MAPPERmRatBN7.2
Rnor_6.068,729,524 - 8,729,689NCBIRnor6.0
Rnor_5.068,656,965 - 8,657,130UniSTSRnor5.0
RGSC_v3.468,852,691 - 8,852,856UniSTSRGSC3.4
Celera68,924,680 - 8,924,845UniSTS
Cytogenetic Map6q12UniSTS
RH141573  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.269,535,388 - 9,535,568 (-)MAPPERmRatBN7.2
Rnor_6.068,390,412 - 8,390,591NCBIRnor6.0
Rnor_5.068,323,039 - 8,323,218UniSTSRnor5.0
RGSC_v3.468,492,816 - 8,492,995UniSTSRGSC3.4
Celera69,260,323 - 9,260,502UniSTS
Cytogenetic Map6q12UniSTS
UniSTS:237721  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.269,198,976 - 9,199,206 (-)MAPPERmRatBN7.2
Rnor_6.068,729,512 - 8,729,741NCBIRnor6.0
Rnor_5.068,656,953 - 8,657,182UniSTSRnor5.0
RGSC_v3.468,852,679 - 8,852,908UniSTSRGSC3.4
Cytogenetic Map6q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:40
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000048550
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 4 68 22 27 3
Low 3 43 52 40 15 40 8 10 6 13 14 8 8
Below cutoff 1 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000048550   ⟹   ENSRNOP00000048187
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl69,198,947 - 9,580,242 (-)Ensembl
Rnor_6.0 Ensembl68,669,722 - 8,729,771 (+)Ensembl
RefSeq Acc Id: NM_001134463   ⟹   NP_001127935
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.269,198,945 - 9,580,098 (-)NCBI
Rnor_6.068,346,645 - 8,729,773 (+)NCBI
Rnor_5.068,278,834 - 8,657,214 (+)NCBI
RGSC_v3.468,448,187 - 8,852,940 (+)RGD
Celera68,924,596 - 9,304,351 (-)RGD
Sequence:
RefSeq Acc Id: XM_039112121   ⟹   XP_038968049
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.269,198,945 - 9,580,198 (-)NCBI
RefSeq Acc Id: XM_039112122   ⟹   XP_038968050
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.269,245,968 - 9,580,200 (-)NCBI
RefSeq Acc Id: XM_039112123   ⟹   XP_038968051
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.269,245,948 - 9,580,200 (-)NCBI
RefSeq Acc Id: XM_039112125   ⟹   XP_038968053
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.269,245,816 - 9,580,197 (-)NCBI
RefSeq Acc Id: XR_005505500
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.269,225,720 - 9,580,198 (-)NCBI
RefSeq Acc Id: XR_005505501
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.269,205,239 - 9,580,196 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001127935   ⟸   NM_001134463
- UniProtKB: B0K012 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000048187   ⟸   ENSRNOT00000048550
RefSeq Acc Id: XP_038968049   ⟸   XM_039112121
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968053   ⟸   XM_039112125
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038968051   ⟸   XM_039112123
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968050   ⟸   XM_039112122
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0K012-F1-model_v2 AlphaFold B0K012 1-323 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310453 AgrOrtholog
BioCyc Gene G2FUF-38663 BioCyc
Ensembl Genes ENSRNOG00000030629 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000048187 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048550 ENTREZGENE, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8367183 IMAGE-MGC_LOAD
InterPro CaM-Lys-N-MeTrfase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Methyltransf_16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:299521 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188690 IMAGE-MGC_LOAD
NCBI Gene 299521 ENTREZGENE
PANTHER PTHR13539 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Methyltransf_16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Camkmt PhenoGen
PROSITE SAM_CLNMT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UHY6_RAT UniProtKB/TrEMBL
  B0K012 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-05-25 Camkmt  calmodulin-lysine N-methyltransferase  RGD1310453  similar to hypothetical protein FLJ23451  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310453  similar to hypothetical protein FLJ23451   RGD1310453_predicted  similar to hypothetical protein FLJ23451 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1310453_predicted  similar to hypothetical protein FLJ23451 (predicted)  LOC299521_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC299521_predicted  similar to hypothetical protein FLJ23451 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL