Agbl5 (AGBL carboxypeptidase 5) - Rat Genome Database
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Gene: Agbl5 (AGBL carboxypeptidase 5) Rattus norvegicus
Analyze
Symbol: Agbl5
Name: AGBL carboxypeptidase 5
RGD ID: 1598311
Description: Predicted to have metallocarboxypeptidase activity and tubulin binding activity. Predicted to be involved in defense response to virus and protein branching point deglutamylation. Predicted to localize to several cellular components, including intercellular bridge; midbody; and mitotic spindle. Human ortholog(s) of this gene implicated in retinitis pigmentosa 75. Orthologous to human AGBL5 (ATP/GTP binding protein like 5); INTERACTS WITH amphetamine; bisphenol A; tetrachloromethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ATP/GTP binding protein-like 5; ATP/GTP-binding protein-like 5; cytosolic carboxypeptidase-like protein 5; hypothetical LOC362710; hypothetical protein LOC362710; LOC362710
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2625,472,333 - 25,492,173 (-)NCBI
Rnor_6.0 Ensembl626,838,036 - 26,855,658 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0626,837,299 - 26,857,234 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0636,652,818 - 36,671,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,455,811 - 25,473,507 (-)NCBIRGSC3.4rn4RGSC3.4
Celera624,963,870 - 24,981,162 (-)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO,ISS)
intercellular bridge  (IEA,ISO)
microtubule cytoskeleton  (ISO)
midbody  (ISO,ISS)
mitotic spindle  (ISO,ISS)
nucleus  (ISO,ISS)

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:17244818   PMID:20519502   PMID:21074048   PMID:23085998   PMID:25103237   PMID:26829768  


Genomics

Comparative Map Data
Agbl5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2625,472,333 - 25,492,173 (-)NCBI
Rnor_6.0 Ensembl626,838,036 - 26,855,658 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0626,837,299 - 26,857,234 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0636,652,818 - 36,671,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,455,811 - 25,473,507 (-)NCBIRGSC3.4rn4RGSC3.4
Celera624,963,870 - 24,981,162 (-)NCBICelera
Cytogenetic Map6q14NCBI
AGBL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl227,042,364 - 27,070,622 (+)EnsemblGRCh38hg38GRCh38
GRCh38227,051,423 - 27,070,620 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37227,274,291 - 27,293,486 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,127,995 - 27,146,994 (+)NCBINCBI36hg18NCBI36
Celera227,120,838 - 27,139,834 (+)NCBI
Cytogenetic Map2p23.3NCBI
HuRef227,016,647 - 27,035,643 (+)NCBIHuRef
CHM1_1227,204,419 - 27,223,406 (+)NCBICHM1_1
Agbl5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,045,321 - 31,064,010 (+)NCBIGRCm39mm39
GRCm39 Ensembl531,046,038 - 31,064,309 (+)Ensembl
GRCm38530,888,639 - 30,906,666 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,888,694 - 30,906,965 (+)EnsemblGRCm38mm10GRCm38
MGSCv37531,191,225 - 31,209,039 (+)NCBIGRCm37mm9NCBIm37
MGSCv36531,165,433 - 31,173,268 (+)NCBImm8
Celera528,368,478 - 28,386,301 (+)NCBICelera
Cytogenetic Map5B1NCBI
Agbl5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,023,534 - 9,044,070 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,023,753 - 9,041,674 (+)NCBIChiLan1.0ChiLan1.0
AGBL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A27,139,729 - 27,158,538 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,139,729 - 27,158,538 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A27,050,510 - 27,069,661 (+)NCBIMhudiblu_PPA_v0panPan3
AGBL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1721,048,423 - 21,064,868 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11721,046,028 - 21,064,873 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Agbl5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364935,470,623 - 5,488,542 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGBL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,046,353 - 112,066,977 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,047,234 - 112,066,977 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,045,899 - 119,065,689 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AGBL5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,547,772 - 80,567,946 (-)NCBI
ChlSab1.1 Ensembl1480,546,549 - 80,564,788 (-)Ensembl
Agbl5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247389,154,291 - 9,171,846 (+)NCBI

Position Markers
BF406564  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0626,848,612 - 26,848,741NCBIRnor6.0
Rnor_5.0636,664,135 - 36,664,264UniSTSRnor5.0
RGSC_v3.4625,466,456 - 25,466,585UniSTSRGSC3.4
Celera624,974,116 - 24,974,245UniSTS
RH 3.4 Map6118.9UniSTS
Cytogenetic Map6q14UniSTS
AA850556  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0626,845,194 - 26,845,344NCBIRnor6.0
Rnor_5.0636,660,487 - 36,660,637UniSTSRnor5.0
RGSC_v3.4625,463,038 - 25,463,188UniSTSRGSC3.4
Celera624,970,707 - 24,970,857UniSTS
RH 3.4 Map689.7UniSTS
Cytogenetic Map6q14UniSTS
BG379037  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0626,849,637 - 26,849,771NCBIRnor6.0
Rnor_5.0636,665,160 - 36,665,294UniSTSRnor5.0
RGSC_v3.4625,467,481 - 25,467,615UniSTSRGSC3.4
Celera624,975,141 - 24,975,275UniSTS
RH 3.4 Map6118.2UniSTS
Cytogenetic Map6q14UniSTS
RH138484  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0626,839,901 - 26,840,073NCBIRnor6.0
Rnor_5.0636,655,516 - 36,655,688UniSTSRnor5.0
RGSC_v3.4625,457,677 - 25,457,849UniSTSRGSC3.4
Celera624,965,736 - 24,965,908UniSTS
RH 3.4 Map6118.0UniSTS
Cytogenetic Map6q14UniSTS
MARC_23457-23458:1027109061:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0626,837,798 - 26,838,265NCBIRnor6.0
Rnor_5.0636,653,413 - 36,653,880UniSTSRnor5.0
RGSC_v3.4625,455,574 - 25,456,041UniSTSRGSC3.4
Celera624,963,633 - 24,964,100UniSTS
Cytogenetic Map6q14UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6135623029Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6135623029Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6135623029Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6135623029Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6135623029Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6141917988Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6142388212Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6142388212Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142388212Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6142388212Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6142388212Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6143665660Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6143665660Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6143665660Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6144015370Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6144570292Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6175623393Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6112039328706721Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112039346120393Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)6112039375023446Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)62537030111715717Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)6616172276002731Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6616172276002731Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)67009971115379601Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)71017386255173862Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)61312295834367603Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)61312295857516539Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)61941788764417887Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62151530265784818Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:37
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000011635
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 2 4 4 4 51 20 37
Low 2 41 53 37 19 37 8 11 23 15 4 11 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001126372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC120639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000011635   ⟹   ENSRNOP00000011635
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl626,838,036 - 26,855,658 (-)Ensembl
RefSeq Acc Id: NM_001126372   ⟹   NP_001119844
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2625,473,073 - 25,490,738 (-)NCBI
Rnor_6.0626,838,035 - 26,855,658 (-)NCBI
Rnor_5.0636,652,818 - 36,671,755 (-)NCBI
RGSC_v3.4625,455,811 - 25,473,507 (-)RGD
Celera624,963,870 - 24,981,162 (-)RGD
Sequence:
RefSeq Acc Id: XM_006239807   ⟹   XP_006239869
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,837,299 - 26,857,228 (-)NCBI
Rnor_5.0636,652,818 - 36,671,755 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239808   ⟹   XP_006239870
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,837,333 - 26,857,229 (-)NCBI
Rnor_5.0636,652,818 - 36,671,755 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239810   ⟹   XP_006239872
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,837,333 - 26,857,227 (-)NCBI
Rnor_5.0636,652,818 - 36,671,755 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239811   ⟹   XP_006239873
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,838,042 - 26,857,225 (-)NCBI
Rnor_5.0636,652,818 - 36,671,755 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764522   ⟹   XP_008762744
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,838,167 - 26,857,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764523   ⟹   XP_008762745
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,838,167 - 26,855,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764524   ⟹   XP_008762746
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,838,167 - 26,855,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112474   ⟹   XP_038968402
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2625,472,337 - 25,490,795 (-)NCBI
RefSeq Acc Id: XM_039112475   ⟹   XP_038968403
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2625,472,718 - 25,490,757 (-)NCBI
RefSeq Acc Id: XM_039112476   ⟹   XP_038968404
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2625,472,718 - 25,492,173 (-)NCBI
RefSeq Acc Id: XM_039112477   ⟹   XP_038968405
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2625,472,718 - 25,492,173 (-)NCBI
RefSeq Acc Id: XM_039112478   ⟹   XP_038968406
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2625,472,333 - 25,490,795 (-)NCBI
RefSeq Acc Id: XM_039112479   ⟹   XP_038968407
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2625,472,333 - 25,490,795 (-)NCBI
RefSeq Acc Id: XM_039112480   ⟹   XP_038968408
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2625,472,333 - 25,490,795 (-)NCBI
RefSeq Acc Id: XM_039112481   ⟹   XP_038968409
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2625,480,744 - 25,490,795 (-)NCBI
RefSeq Acc Id: XR_005505537
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2625,472,774 - 25,490,795 (-)NCBI
RefSeq Acc Id: XR_005505538
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2625,472,333 - 25,490,795 (-)NCBI
RefSeq Acc Id: XR_005505539
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2625,472,333 - 25,490,795 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001119844   ⟸   NM_001126372
- UniProtKB: B2GV17 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006239872   ⟸   XM_006239810
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006239870   ⟸   XM_006239808
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006239869   ⟸   XM_006239807
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006239873   ⟸   XM_006239811
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008762744   ⟸   XM_008764522
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008762746   ⟸   XM_008764524
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008762745   ⟸   XM_008764523
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000011635   ⟸   ENSRNOT00000011635
RefSeq Acc Id: XP_038968408   ⟸   XM_039112480
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038968407   ⟸   XM_039112479
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968406   ⟸   XM_039112478
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968402   ⟸   XM_039112474
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968405   ⟸   XM_039112477
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968404   ⟸   XM_039112476
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968403   ⟸   XM_039112475
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968409   ⟸   XM_039112481
- Peptide Label: isoform X5

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694457
Promoter ID:EPDNEW_R4981
Type:initiation region
Name:Agbl5_1
Description:ATP/GTP binding protein-like 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,855,701 - 26,855,761EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1598311 AgrOrtholog
Ensembl Genes ENSRNOG00000008612 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000011635 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011635 ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7106591 IMAGE-MGC_LOAD
InterPro Pepdidase_M14_N UniProtKB/Swiss-Prot
  Peptidase_M14 UniProtKB/Swiss-Prot
KEGG Report rno:362710 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188004 IMAGE-MGC_LOAD
NCBI Gene 362710 ENTREZGENE
Pfam Pepdidase_M14_N UniProtKB/Swiss-Prot
  Peptidase_M14 UniProtKB/Swiss-Prot
PhenoGen Agbl5 PhenoGen
UniProt B2GV17 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-18 Agbl5  AGBL carboxypeptidase 5  Agbl5  ATP/GTP binding protein-like 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-09-18 Agbl5  ATP/GTP binding protein-like 5  LOC362710  hypothetical LOC362710  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC362710  hypothetical LOC362710      Symbol and Name status set to provisional 70820 PROVISIONAL