Atp6v1e2 (ATPase H+ transporting V1 subunit E2) - Rat Genome Database

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Gene: Atp6v1e2 (ATPase H+ transporting V1 subunit E2) Rattus norvegicus
Analyze
Symbol: Atp6v1e2
Name: ATPase H+ transporting V1 subunit E2
RGD ID: 1311680
Description: Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in acrosomal vesicle. Predicted to be part of proton-transporting two-sector ATPase complex, catalytic domain. Orthologous to human ATP6V1E2 (ATPase H+ transporting V1 subunit E2); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH bisphenol A; cadmium dichloride; Cuprizon.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATPase, H transporting, lysosomal V1 subunit E2; ATPase, H+ transporting, V1 subunit E-like 2; ATPase, H+ transporting, V1 subunit E-like 2 isoform 2; LOC366545; V-type proton ATPase subunit E 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8613,417,046 - 13,425,628 (+)NCBIGRCr8
mRatBN7.267,667,359 - 7,673,711 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl67,667,564 - 7,672,626 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx67,946,740 - 7,950,655 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.068,256,150 - 8,260,065 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.067,783,275 - 7,787,190 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0610,510,370 - 10,517,059 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl610,511,452 - 10,515,370 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0620,499,969 - 20,508,542 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4610,391,729 - 10,395,647 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1610,391,879 - 10,396,115 (-)NCBI
Celera67,403,594 - 7,407,511 (+)NCBICelera
Cytogenetic Map6q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11872743  


Genomics

Comparative Map Data
Atp6v1e2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8613,417,046 - 13,425,628 (+)NCBIGRCr8
mRatBN7.267,667,359 - 7,673,711 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl67,667,564 - 7,672,626 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx67,946,740 - 7,950,655 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.068,256,150 - 8,260,065 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.067,783,275 - 7,787,190 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0610,510,370 - 10,517,059 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl610,511,452 - 10,515,370 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0620,499,969 - 20,508,542 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4610,391,729 - 10,395,647 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1610,391,879 - 10,396,115 (-)NCBI
Celera67,403,594 - 7,407,511 (+)NCBICelera
Cytogenetic Map6q12NCBI
ATP6V1E2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38246,511,847 - 46,542,577 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl246,490,750 - 46,542,577 (-)EnsemblGRCh38hg38GRCh38
GRCh37246,738,986 - 46,769,716 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36246,592,490 - 46,600,600 (-)NCBINCBI36Build 36hg18NCBI36
Build 34246,650,638 - 46,658,747NCBI
Celera246,577,658 - 46,585,772 (-)NCBICelera
Cytogenetic Map2p21NCBI
HuRef246,476,563 - 46,484,674 (-)NCBIHuRef
CHM1_1246,669,331 - 46,677,438 (-)NCBICHM1_1
T2T-CHM13v2.0246,516,901 - 46,547,610 (-)NCBIT2T-CHM13v2.0
Atp6v1e2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391787,251,537 - 87,255,315 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1787,251,537 - 87,255,325 (-)EnsemblGRCm39 Ensembl
GRCm381786,944,109 - 86,947,887 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1786,944,109 - 86,947,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv371787,343,449 - 87,347,227 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361786,852,435 - 86,856,213 (-)NCBIMGSCv36mm8
Celera1791,322,839 - 91,326,611 (-)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1756.9NCBI
Atp6v1e2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544113,432,951 - 13,458,467 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544113,432,951 - 13,458,467 (-)NCBIChiLan1.0ChiLan1.0
ATP6V1E2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21279,847,862 - 79,878,241 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A79,851,830 - 79,882,206 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A46,627,574 - 46,658,180 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A47,558,819 - 47,589,194 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A47,559,015 - 47,559,695 (-)Ensemblpanpan1.1panPan2
ATP6V1E2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11048,746,331 - 48,754,047 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1048,600,601 - 48,609,203 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01049,617,392 - 49,625,990 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1049,617,575 - 49,618,255 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11049,325,448 - 49,334,035 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01049,615,682 - 49,624,276 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01049,798,781 - 49,807,379 (-)NCBIUU_Cfam_GSD_1.0
Atp6v1e2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629234,317,614 - 34,322,869 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365085,750,595 - 5,751,275 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1E2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl394,032,773 - 94,033,453 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1394,012,252 - 94,078,475 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23100,097,229 - 100,118,012 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1E2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11460,648,934 - 60,895,703 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1460,695,500 - 60,696,180 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604551,157,782 - 51,197,117 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v1e2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473827,975,166 - 27,980,969 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp6v1e2
16 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:48
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000020845
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 39
Low 27 6 45 6 155 15 57 20
Below cutoff 21 120 163 107 24 107 30 36 89 97 49 37 18

Sequence


Ensembl Acc Id: ENSRNOT00000020845   ⟹   ENSRNOP00000020845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl67,667,564 - 7,672,626 (+)Ensembl
Rnor_6.0 Ensembl610,511,452 - 10,515,370 (-)Ensembl
RefSeq Acc Id: NM_001108979   ⟹   NP_001102449
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8613,421,710 - 13,425,628 (+)NCBI
mRatBN7.267,668,710 - 7,672,629 (+)NCBI
Rnor_6.0610,511,452 - 10,515,370 (-)NCBI
Rnor_5.0620,499,969 - 20,508,542 (-)NCBI
RGSC_v3.4610,391,729 - 10,395,647 (-)RGD
Celera67,403,594 - 7,407,511 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239715   ⟹   XP_006239777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8613,420,375 - 13,425,627 (+)NCBI
mRatBN7.267,667,359 - 7,673,711 (+)NCBI
Rnor_6.0610,510,370 - 10,517,059 (-)NCBI
Rnor_5.0620,499,969 - 20,508,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239716   ⟹   XP_006239778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8613,421,956 - 13,425,627 (+)NCBI
mRatBN7.267,670,570 - 7,673,711 (+)NCBI
Rnor_6.0610,510,370 - 10,513,429 (-)NCBI
Rnor_5.0620,499,969 - 20,508,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063262178   ⟹   XP_063118248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8613,417,046 - 13,425,627 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001102449 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239777 (Get FASTA)   NCBI Sequence Viewer  
  XP_006239778 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118248 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM02658 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020845.4
RefSeq Acc Id: NP_001102449   ⟸   NM_001108979
- UniProtKB: D3ZJ78 (UniProtKB/TrEMBL),   A6H9F3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239777   ⟸   XM_006239715
- Peptide Label: isoform X1
- UniProtKB: D3ZJ78 (UniProtKB/TrEMBL),   A6H9F3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239778   ⟸   XM_006239716
- Peptide Label: isoform X1
- UniProtKB: D3ZJ78 (UniProtKB/TrEMBL),   A6H9F3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020845   ⟸   ENSRNOT00000020845
RefSeq Acc Id: XP_063118248   ⟸   XM_063262178
- Peptide Label: isoform X1
- UniProtKB: A6H9F3 (UniProtKB/TrEMBL),   D3ZJ78 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJ78-F1-model_v2 AlphaFold D3ZJ78 1-226 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694387
Promoter ID:EPDNEW_R4912
Type:multiple initiation site
Name:Atp6v1e2_1
Description:ATPase H+ transporting V1 subunit E2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0610,515,369 - 10,515,429EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311680 AgrOrtholog
BioCyc Gene G2FUF-38708 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
BioCyc Pathway Image PWY-7980 BioCyc
Ensembl Genes ENSRNOG00000015566 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020845.6 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2320.30 UniProtKB/TrEMBL
  6.10.250.1620 UniProtKB/TrEMBL
InterPro ATPase_E_C UniProtKB/TrEMBL
  ATPase_V1/A1-cplx_esu UniProtKB/TrEMBL
KEGG Report rno:366545 UniProtKB/TrEMBL
NCBI Gene 366545 ENTREZGENE
PANTHER PTHR45715 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT E 2 UniProtKB/TrEMBL
Pfam vATP-synt_E UniProtKB/TrEMBL
PhenoGen Atp6v1e2 PhenoGen
RatGTEx ENSRNOG00000015566 RatGTEx
Superfamily-SCOP V-type ATPase subunit E-like UniProtKB/TrEMBL
UniProt A6H9F3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJ78 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Atp6v1e2  ATPase H+ transporting V1 subunit E2  Atp6v1e2  ATPase, H transporting, lysosomal V1 subunit E2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Atp6v1e2  ATPase, H transporting, lysosomal V1 subunit E2   Atp6v1e2_predicted  ATPase, H transporting, lysosomal V1 subunit E2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Atp6v1e2_predicted  ATPase, H transporting, lysosomal V1 subunit E2 (predicted)    ATPase, H+ transporting, V1 subunit E-like 2 isoform 2 (predicted)  Name updated 1299863 APPROVED
2005-01-12 Atp6v1e2_predicted  ATPase, H+ transporting, V1 subunit E-like 2 isoform 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED