Gene: LOC689971 (similar to histone aminotransferase 1) Rattus norvegicus
Analyze
Symbol:
LOC689971
Name:
similar to histone aminotransferase 1
Description:
null
Type:
pseudo
RefSeq Status:
MODEL
Latest Assembly:
Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Rnor_6.0 6 37,340,372 - 37,352,990 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_5.0 6 50,467,176 - 50,479,794 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 6 35,654,154 - 35,668,329 (+) NCBI RGSC3.4 rn4 RGSC3.4 Celera 6 34,218,427 - 34,229,801 (-) NCBI Celera Cytogenetic Map 6 q15 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Genomics
Position Markers
BI285581
Rat Assembly Chr Position (strand) Source JBrowse Rnor_6.0 6 37,340,660 - 37,340,805 NCBI Rnor6.0 Rnor_5.0 6 50,467,464 - 50,467,609 UniSTS Rnor5.0 RGSC_v3.4 6 35,668,080 - 35,668,225 UniSTS RGSC3.4 Celera 6 34,218,715 - 34,218,860 UniSTS Cytogenetic Map 6 q14 UniSTS Cytogenetic Map 3 q21 UniSTS
MARC_12189-12190:1004712897:1
Rat Assembly Chr Position (strand) Source JBrowse Rnor_6.0 3 58,051,360 - 58,051,990 NCBI Rnor6.0 Rnor_6.0 6 37,341,155 - 37,341,286 NCBI Rnor6.0 Rnor_5.0 6 50,467,959 - 50,468,090 UniSTS Rnor5.0 Rnor_5.0 3 64,539,868 - 64,540,498 UniSTS Rnor5.0 RGSC_v3.4 6 35,667,599 - 35,667,730 UniSTS RGSC3.4 RGSC_v3.4 3 53,725,629 - 53,726,259 UniSTS RGSC3.4 Celera 6 34,219,210 - 34,219,341 UniSTS Celera 3 55,793,887 - 55,794,517 UniSTS Cytogenetic Map 6 q14 UniSTS Cytogenetic Map 3 q21 UniSTS
RH124502
Rat Assembly Chr Position (strand) Source JBrowse Rnor_6.0 3 58,069,858 - 58,069,947 NCBI Rnor6.0 Rnor_5.0 3 64,558,366 - 64,558,455 UniSTS Rnor5.0 RGSC_v3.4 6 35,668,302 - 35,668,391 UniSTS RGSC3.4 RGSC_v3.4 3 53,744,127 - 53,744,216 UniSTS RGSC3.4 Celera 3 55,812,384 - 55,812,473 UniSTS Cytogenetic Map 6 q14 UniSTS Cytogenetic Map 3 q21 UniSTS
QTLs in Region (Rnor_6.0)
1331743 Uae28 Urinary albumin excretion QTL 28 4.5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 6 1 41917988 Rat 9589048 Scfw3 Subcutaneous fat weight QTL 3 4.57 0.001 subcutaneous adipose mass (VT:1000472) abdominal subcutaneous fat weight (CMO:0002069) 6 1 42388212 Rat 9589129 Insul24 Insulin level QTL 24 19.06 0.001 blood insulin amount (VT:0001560) plasma insulin level (CMO:0000342) 6 1 42388212 Rat 7411603 Foco13 Food consumption QTL 13 5.5 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 6 1 42388212 Rat 7411542 Bw127 Body weight QTL 127 5.5 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 6 1 42388212 Rat 8552962 Pigfal16 Plasma insulin-like growth factor 1 level QTL 16 9.4 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 6 1 42388212 Rat 2293709 Bss23 Bone structure and strength QTL 23 5.18 0.0001 femur morphology trait (VT:0000559) femur cross-sectional area (CMO:0001661) 6 1 43665660 Rat 2293650 Bss31 Bone structure and strength QTL 31 5.05 0.0001 femur strength trait (VT:0010010) femur midshaft polar moment of inertia (CMO:0001669) 6 1 43665660 Rat 2293656 Bss28 Bone structure and strength QTL 28 6.79 0.0001 femur morphology trait (VT:0000559) femur midshaft cortical cross-sectional area (CMO:0001663) 6 1 43665660 Rat 7411584 Foco4 Food consumption QTL 4 4.3 0.001 eating behavior trait (VT:0001431) feed conversion ratio (CMO:0001312) 6 1 44015370 Rat 738024 Sach5 Saccharine consumption QTL 5 3.9 0.00039 consumption behavior trait (VT:0002069) saccharin intake volume to total fluid intake volume ratio (CMO:0001601) 6 1 44570292 Rat 2301972 Bp325 Blood pressure QTL 325 4.8 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 6 1 75623393 Rat 2292589 Emca10 Estrogen-induced mammary cancer QTL 10 0.048 mammary gland integrity trait (VT:0010552) post-insult time to mammary tumor formation (CMO:0000345) 6 1120393 46120393 Rat 1354664 Slep2 Serum leptin concentration QTL 2 4.49 blood leptin amount (VT:0005667) serum leptin level (CMO:0000780) 6 1120393 75023446 Rat 1576309 Emca7 Estrogen-induced mammary cancer QTL 7 4 mammary gland integrity trait (VT:0010552) mammary tumor number (CMO:0000343) 6 2537030 111715717 Rat 1578665 Bss16 Bone structure and strength QTL 16 4.4 femur morphology trait (VT:0000559) bone trabecular cross-sectional area (CMO:0002311) 6 6161722 76002731 Rat 1578668 Bmd14 Bone mineral density QTL 14 3.8 femur mineral mass (VT:0010011) total volumetric bone mineral density (CMO:0001728) 6 6161722 76002731 Rat 4145119 Mcs25 Mammary carcinoma susceptibility QTL 25 0.0001 mammary gland integrity trait (VT:0010552) percentage of deaths in a study population during a period of time (CMO:0001024) 6 7009971 115379601 Rat 634322 Bw12 Body weight QTL 12 0 body mass (VT:0001259) body weight (CMO:0000012) 7 10173862 55173862 Rat 1300164 Rf15 Renal function QTL 15 3.12 renal blood flow trait (VT:2000006) absolute change in renal blood flow rate (CMO:0001168) 6 13122958 57516539 Rat 10401812 Kidm54 Kidney mass QTL 54 kidney mass (VT:0002707) both kidneys wet weight (CMO:0000085) 6 16810107 61810107 Rat 10401800 Kidm49 Kidney mass QTL 49 kidney mass (VT:0002707) both kidneys wet weight (CMO:0000085) 6 16810107 61810107 Rat 8552910 Pigfal5 Plasma insulin-like growth factor 1 level QTL 5 4.3 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 6 19417887 64417887 Rat 1641898 Colcr4 Colorectal carcinoma resistance QTL4 3.71 0.0007 intestine integrity trait (VT:0010554) well differentiated malignant colorectal tumor surface area measurement (CMO:0002077) 6 21515302 65784818 Rat 2293839 Kiddil2 Kidney dilation QTL 2 4.8 kidney pelvis morphology trait (VT:0004194) hydronephrosis severity score (CMO:0001208) 6 22042854 84763421 Rat 2293841 Kiddil4 Kidney dilation QTL 4 4.4 kidney pelvis morphology trait (VT:0004194) hydronephrosis severity score (CMO:0001208) 6 22042854 84763421 Rat 8693632 Alc27 Alcohol consumption QTL 27 2.2 0.791 drinking behavior trait (VT:0001422) calculated ethanol drink intake rate (CMO:0001615) 6 34257766 53855198 Rat 1300143 Rf14 Renal function QTL 14 2.92 renal blood flow trait (VT:2000006) absolute change in renal blood flow rate (CMO:0001168) 6 34367436 80490628 Rat 1331779 Rf38 Renal function QTL 38 2.876 kidney blood vessel physiology trait (VT:0100012) absolute change in renal vascular resistance (CMO:0001900) 6 34995656 75623393 Rat 634318 Bw118 Body weight QTL 118 3.55 abdominal fat pad mass (VT:1000711) abdominal fat pad weight (CMO:0000088) 6 36260288 60606186 Rat 6893340 Cm77 Cardiac mass QTL 77 0.26 0.57 heart mass (VT:0007028) heart weight as percentage of body weight (CMO:0000075) 6 36260288 84763275 Rat
Sequence
Nucleotide Sequences
Strain Variation
Strain Sequence Variants (Rnor 5.0)
ACI/EurMcwi (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.5.9-r16 and GATK v1.3-14
Description:
Medical College of Wisconsin (Dr. Howard Jacob)
ACI/N (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
BBDP/WorN (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
BDIX.Cg-Tal/NemOda (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
BDIX/NemOda (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
BN-Lx/Cub (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
BN/SsN (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
BN/SsNSlc (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
BUF/MNa (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
BUF/N (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
COP/CrCrl (MCW & UW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.5.9-r16 and GATK v2.3-5
Breeder:
Charles River Laboratories
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
Crl:SD (UDEL)
Secondary Analysis:
GATK (HaplotypeCaller v.3.1-1, VariantAnnotator v.3.1-1, SnpEff v.3.6)
Description:
Provided by Barthold at al
DOB/Oda (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
F344/DuCrlCrlj (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
F344/Jcl (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
F344/NCrl (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
F344/NHsd (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
F344/NSlc (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
F344/Stm (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
FHH/EurMcwi (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.5.9-r16 and GATK v1.3-14
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.5.9-r16 and GATK v1.3-14
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GH/OmrMcwi (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.5.9-r16 and GATK v2.3-5
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
HTX/Kyo (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
HWY/Slc (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
IS-Tlk/Kyo (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
IS/Kyo (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
KFRS3B/Kyo (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
LE/OrlBarth (UDEL)
Secondary Analysis:
GATK (HaplotypeCaller v.3.1-1, VariantAnnotator v.3.1-1, SnpEff v.3.6)
Description:
Provided by Barthold at al
LE/Stm (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
LEC/Tj (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
LEW/Crl (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
LEW/NCrl (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
M520/N (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
MHS/Gib (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
MNS/Gib (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
MR/N (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
NIG-III/Hok (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
RCS/Kyo (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
SBH/Ygl (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
SBH/Ygl (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder:
Medical College of Wisconsin
Description:
SBH/Ygl sequenced by MCW
SBN/Ygl (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
SBN/Ygl (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder:
Medical College of Wisconsin
Description:
SBN/Ygl sequenced by MCW
SDLEF7/Barth (UDEL)
Secondary Analysis:
GATK (HaplotypeCaller v.3.1-1, VariantAnnotator v.3.1-1, SnpEff v.3.6)
Description:
Provided by Barthold at al
SHR/NHsd (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
SR/JrHsd (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
SR/JrHsd (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.5.9-r16 and GATK v1.3-14
Breeder:
Harlan Laboratories
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/Jr (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
SS/JrHsdMcwi (MCW)
Sequenced By:
Medical College of Wisconsin (Dr. Howard Jacob)
Platform:
Illumina HiSeq 2000
Secondary Analysis:
BWA v0.5.9-r16 and GATK v1.3-14
Description:
Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
WAG/Rij (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
WKY/Gcrc (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
WKY/N (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
WKY/NCrl (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
WKY/NHsd (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
WN/N (KNAW)
Secondary Analysis:
GATK
Description:
Provided by Hermsen at al
ZF (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
ZFDM (KyushuU)
Sequenced By:
Kyushu University (Dr. Mikita Suyama)
Platform:
Illumina NextSeq 500
Secondary Analysis:
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:
NBRP-Rat/Kyoto University
Description:
Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:
Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.
Additional Information
External Database Links
Database Acc Id Source(s)
NCBI Gene 689971 ENTREZGENE
PhenoGen LOC689971 PhenoGen
Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2008-05-28
LOC689971
similar to histone aminotransferase 1
LOC689971
similar to histone aminotransferase 1 (predicted)
'predicted' is removed from gene name
2292626 APPROVED
2006-11-19
LOC689971
similar to histone aminotransferase 1 (predicted)
Symbol and Name status set to provisional
70820 PROVISIONAL
RGD Object Information
RGD ID:
1586329
Created:
2006-11-19
Species:
Rattus norvegicus
Last Modified:
2019-04-12
Status:
ACTIVE
Nucleotide Sequences
