Uap1l2 (UDP-N-acteylglucosamine pyrophosphorylase 1-like 2) - Rat Genome Database

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Gene: Uap1l2 (UDP-N-acteylglucosamine pyrophosphorylase 1-like 2) Rattus norvegicus
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Symbol: Uap1l2
Name: UDP-N-acteylglucosamine pyrophosphorylase 1-like 2
RGD ID: 1309234
Description: Predicted to enable uridylyltransferase activity; INTERACTS WITH (+)-schisandrin B; tetrachloromethane.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC304954; Uap1; UDP-N-acetylglucosamine pyrophosphorylase 1; UDP-N-acetylhexosamine pyrophosphorylase
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr867,467,892 - 7,469,778 (-)NCBIGRCr8
mRatBN7.261,714,320 - 1,741,396 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0617,754,248 - 17,760,364 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0627,665,819 - 27,667,486 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4616,893,311 - 16,895,050 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1616,896,263 - 16,898,436 (+)NCBI
Celera61,520,098 - 1,521,872 (-)NCBICelera
Cytogenetic Map6q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The cellular fate of glucose and its relevance in type 2 diabetes. Bouche C, etal., Endocr Rev. 2004 Oct;25(5):807-30.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Subcellular localization and tissue distribution of sialic acid precursor-forming enzymes. Van Rinsum J, etal., Biochem J. 1983 Jan 15;210(1):21-8.

Genomics

Variants

.
Variants in Uap1l2
40 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat

Markers in Region
AA437972  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.261,714,760 - 1,714,896 (-)MAPPERmRatBN7.2
mRatBN7.21382,350,887 - 82,351,891 (+)MAPPERmRatBN7.2
Rnor_6.01388,471,473 - 88,472,476NCBIRnor6.0
Rnor_6.0617,759,869 - 17,760,004NCBIRnor6.0
Rnor_5.01393,097,399 - 93,098,402UniSTSRnor5.0
Rnor_5.0627,667,010 - 27,667,145UniSTSRnor5.0
RGSC_v3.41385,961,013 - 85,962,016UniSTSRGSC3.4
RGSC_v3.4616,894,589 - 16,894,724UniSTSRGSC3.4
Celera61,520,459 - 1,520,594UniSTS
Celera1382,011,485 - 82,012,488UniSTS
Cytogenetic Map13q24UniSTS
Cytogenetic Map6q12UniSTS


Expression


Sequence


RefSeq Acc Id: XM_039078104   ⟹   XP_038934032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr867,467,892 - 7,469,778 (-)NCBI
mRatBN7.261,714,320 - 1,741,396 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038934032 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038934032   ⟸   XM_039078104


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-38808 BioCyc
NCBI Gene 304954 ENTREZGENE
PhenoGen Uap1l2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-05-12 Uap1l2  UDP-N-acteylglucosamine pyrophosphorylase 1-like 2  Uap1_predicted  UDP-N-acetylglucosamine pyrophosphorylase 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Uap1_predicted  UDP-N-acetylglucosamine pyrophosphorylase 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED