Srbd1 (S1 RNA binding domain 1) - Rat Genome Database

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Gene: Srbd1 (S1 RNA binding domain 1) Rattus norvegicus
Analyze
Symbol: Srbd1
Name: S1 RNA binding domain 1
RGD ID: 1562788
Description: Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Orthologous to human SRBD1 (S1 RNA binding domain 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cobalt dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC301665; RGD1562788; S1 RNA-binding domain-containing protein 1; similar to hypothetical protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.268,473,591 - 8,664,544 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl68,475,542 - 8,664,544 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx68,752,432 - 8,941,488 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.069,061,821 - 9,250,883 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.068,589,140 - 8,778,192 (+)NCBIRnor_WKY
Rnor_6.069,266,559 - 9,459,212 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl69,266,891 - 9,459,188 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.069,187,407 - 9,380,438 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.469,412,281 - 9,600,715 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera68,203,595 - 8,391,774 (+)NCBICelera
Cytogenetic Map6q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Srbd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.268,473,591 - 8,664,544 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl68,475,542 - 8,664,544 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx68,752,432 - 8,941,488 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.069,061,821 - 9,250,883 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.068,589,140 - 8,778,192 (+)NCBIRnor_WKY
Rnor_6.069,266,559 - 9,459,212 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl69,266,891 - 9,459,188 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.069,187,407 - 9,380,438 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.469,412,281 - 9,600,715 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera68,203,595 - 8,391,774 (+)NCBICelera
Cytogenetic Map6q12NCBI
SRBD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38245,388,680 - 45,611,267 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl245,388,680 - 45,612,165 (-)EnsemblGRCh38hg38GRCh38
GRCh37245,615,819 - 45,838,406 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36245,469,324 - 45,691,907 (-)NCBINCBI36Build 36hg18NCBI36
Celera245,454,104 - 45,676,639 (-)NCBICelera
Cytogenetic Map2p21NCBI
HuRef245,353,674 - 45,576,490 (-)NCBIHuRef
CHM1_1245,547,166 - 45,769,442 (-)NCBICHM1_1
T2T-CHM13v2.0245,393,909 - 45,616,311 (-)NCBIT2T-CHM13v2.0
Srbd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391786,292,093 - 86,452,644 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1786,292,093 - 86,452,603 (-)EnsemblGRCm39 Ensembl
GRCm381785,984,665 - 86,145,216 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1785,984,665 - 86,145,175 (-)EnsemblGRCm38mm10GRCm38
MGSCv371786,384,005 - 86,544,515 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361785,892,991 - 85,948,757 (-)NCBIMGSCv36mm8
Celera1790,356,710 - 90,517,663 (-)NCBICelera
Cytogenetic Map17E4NCBI
Srbd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544112,375,565 - 12,606,923 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544112,374,940 - 12,642,295 (-)NCBIChiLan1.0ChiLan1.0
SRBD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A46,424,686 - 46,648,193 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A46,424,686 - 46,641,817 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A45,493,552 - 45,717,823 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SRBD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11047,746,850 - 47,939,124 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1047,721,126 - 47,939,042 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1047,602,280 - 47,794,371 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01048,622,322 - 48,812,070 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1048,595,853 - 48,812,330 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11048,330,577 - 48,519,821 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01048,619,345 - 48,811,568 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01048,802,229 - 48,991,976 (-)NCBIUU_Cfam_GSD_1.0
Srbd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629235,105,621 - 35,316,132 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365086,534,218 - 6,746,018 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRBD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl394,909,127 - 95,138,915 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1394,909,053 - 95,133,939 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23101,031,977 - 101,319,820 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRBD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11461,612,299 - 61,836,002 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1461,612,312 - 61,836,522 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604550,035,373 - 50,257,178 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srbd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473826,830,682 - 27,077,955 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH139060  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.268,637,857 - 8,637,993 (-)MAPPERmRatBN7.2
Rnor_6.069,293,108 - 9,293,243NCBIRnor6.0
Rnor_5.069,213,956 - 9,214,091UniSTSRnor5.0
RGSC_v3.469,438,829 - 9,438,964UniSTSRGSC3.4
Celera68,365,091 - 8,365,226UniSTS
Cytogenetic Map6q12UniSTS
RH142869  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.268,637,877 - 8,637,994 (-)MAPPERmRatBN7.2
Rnor_6.069,293,107 - 9,293,223NCBIRnor6.0
Rnor_5.069,213,955 - 9,214,071UniSTSRnor5.0
RGSC_v3.469,438,828 - 9,438,944UniSTSRGSC3.4
Celera68,365,111 - 8,365,227UniSTS
Cytogenetic Map6q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:331
Count of miRNA genes:167
Interacting mature miRNAs:194
Transcripts:ENSRNOT00000019894, ENSRNOT00000073363
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 24 40 24 19 24 1 3 74 30 36 11 1
Low 1 19 17 17 17 7 8 5 5 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000019894   ⟹   ENSRNOP00000019895
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl68,475,542 - 8,664,544 (+)Ensembl
Rnor_6.0 Ensembl69,266,891 - 9,459,188 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096560   ⟹   ENSRNOP00000094376
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl68,588,166 - 8,664,544 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111529   ⟹   ENSRNOP00000096007
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl68,479,157 - 8,664,543 (+)Ensembl
RefSeq Acc Id: XM_006239708   ⟹   XP_006239770
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.268,475,517 - 8,664,544 (+)NCBI
Rnor_6.069,266,559 - 9,459,130 (-)NCBI
Rnor_5.069,187,407 - 9,380,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039113056   ⟹   XP_038968984
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.268,473,591 - 8,664,544 (+)NCBI
RefSeq Acc Id: XM_039113057   ⟹   XP_038968985
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.268,475,516 - 8,649,727 (+)NCBI
RefSeq Acc Id: XM_039113058   ⟹   XP_038968986
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.268,490,409 - 8,664,544 (+)NCBI
RefSeq Acc Id: XM_039113059   ⟹   XP_038968987
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.268,475,515 - 8,565,071 (+)NCBI
RefSeq Acc Id: XM_237474   ⟹   XP_237474
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.268,475,397 - 8,664,544 (+)NCBI
Rnor_6.069,266,559 - 9,459,212 (-)NCBI
Rnor_5.069,187,407 - 9,380,438 (-)NCBI
RGSC_v3.469,412,281 - 9,600,715 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: XP_237474   ⟸   XM_237474
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006239770   ⟸   XM_006239708
- Peptide Label: isoform X1
- UniProtKB: D4A9B0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000019895   ⟸   ENSRNOT00000019894
RefSeq Acc Id: XP_038968984   ⟸   XM_039113056
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968987   ⟸   XM_039113059
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038968985   ⟸   XM_039113057
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968986   ⟸   XM_039113058
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000094376   ⟸   ENSRNOT00000096560
RefSeq Acc Id: ENSRNOP00000096007   ⟸   ENSRNOT00000111529
Protein Domains
S1 motif

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9B0-F1-model_v2 AlphaFold D4A9B0 1-983 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694390
Promoter ID:EPDNEW_R4908
Type:initiation region
Name:Srbd1_1
Description:S1 RNA binding domain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.069,459,162 - 9,459,222EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562788 AgrOrtholog
BioCyc Gene G2FUF-38689 BioCyc
Ensembl Genes ENSRNOG00000014720 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000019895 ENTREZGENE
  ENSRNOP00000019895.7 UniProtKB/TrEMBL
  ENSRNOP00000094376.1 UniProtKB/TrEMBL
  ENSRNOP00000096007 ENTREZGENE
  ENSRNOP00000096007.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019894 ENTREZGENE
  ENSRNOT00000019894.8 UniProtKB/TrEMBL
  ENSRNOT00000096560.1 UniProtKB/TrEMBL
  ENSRNOT00000111529 ENTREZGENE
  ENSRNOT00000111529.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.650 UniProtKB/TrEMBL
  1.10.3500.10 UniProtKB/TrEMBL
  2.40.50.140 UniProtKB/TrEMBL
  3.30.420.140 UniProtKB/TrEMBL
InterPro HHH_9 UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
  Rbsml_prot_S1_RNA-bd_dom UniProtKB/TrEMBL
  RNA-binding_domain_S1 UniProtKB/TrEMBL
  RNaseH-like_dom UniProtKB/TrEMBL
  RuvA_2-like UniProtKB/TrEMBL
  S1_Tex UniProtKB/TrEMBL
  Tex-like_dom UniProtKB/TrEMBL
  Tex-like_HTH_dom UniProtKB/TrEMBL
  Tex-like_N UniProtKB/TrEMBL
  Tex_YqgF UniProtKB/TrEMBL
  YqgF/RNaseH-like_dom UniProtKB/TrEMBL
  YqgF/RNaseH-like_dom_sf UniProtKB/TrEMBL
KEGG Report rno:301665 UniProtKB/TrEMBL
NCBI Gene 301665 ENTREZGENE
Pfam HHH_9 UniProtKB/TrEMBL
  PF00575 UniProtKB/TrEMBL
  Tex_N UniProtKB/TrEMBL
  Tex_YqgF UniProtKB/TrEMBL
PhenoGen Srbd1 PhenoGen
PROSITE PS50126 UniProtKB/TrEMBL
SMART SM00316 UniProtKB/TrEMBL
  YqgFc UniProtKB/TrEMBL
Superfamily-SCOP Nucleic_acid_OB UniProtKB/TrEMBL
  SSF47781 UniProtKB/TrEMBL
  SSF53098 UniProtKB/TrEMBL
UniProt A0A8I6AKN6_RAT UniProtKB/TrEMBL
  A0A8I6GLE9_RAT UniProtKB/TrEMBL
  D4A9B0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-29 Srbd1  S1 RNA binding domain 1  RGD1562788_predicted  similar to hypothetical protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562788_predicted  similar to hypothetical protein (predicted)  LOC301665  similar to hypothetical protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC301665  similar to hypothetical protein      Symbol and Name status set to provisional 70820 PROVISIONAL