Yipf4l1 (Yip1 domain family, member 4 like 1) - Rat Genome Database

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Gene: Yipf4l1 (Yip1 domain family, member 4 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Yipf4l1
Name: Yip1 domain family, member 4 like 1
RGD ID: 1565766
Description: Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane.
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: ENSRNOG00000065148; hypothetical gene supported by BC088468; hypothetical gene supported by BC088468; NM_001009712; LOC500622; NM_001009712; RGD1565766; Yip1 domain family, member 4-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8632,643,116 - 32,644,298 (+)NCBIGRCr8
mRatBN7.2626,923,605 - 26,924,789 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl626,923,795 - 26,924,535 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl626,923,795 - 26,924,535 (+)NCBImRatBN7.2 Ensembl
Rnor_6.0628,367,389 - 28,368,750 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0638,176,267 - 38,178,075 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4626,913,435 - 26,914,175 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera626,399,955 - 26,401,140 (+)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:60
Interacting mature miRNAs:61
Transcripts:ENSRNOT00000000223
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)62228825732981219Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000113488
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl626,923,795 - 26,924,535 (+)Ensembl
RefSeq Acc Id: XM_039113095   ⟹   XP_038969023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8632,643,116 - 32,644,298 (+)NCBI
mRatBN7.2626,923,605 - 26,924,789 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038969023 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007607.5
RefSeq Acc Id: XP_038969023   ⟸   XM_039113095
- UniProtKB: A0A8L2Q3C8 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-38286 BioCyc
Ensembl Genes ENSRNOG00000005610 UniProtKB/TrEMBL
  ENSRNOG00000065148 Ensembl
Ensembl Transcript ENSRNOT00000007607.6 UniProtKB/TrEMBL
InterPro Yip1/4-like UniProtKB/TrEMBL
NCBI Gene 500622 ENTREZGENE
PANTHER GOLGI MEMBRANE PROTEIN YIP1 UniProtKB/TrEMBL
  PROTEIN YIPF4 UniProtKB/TrEMBL
PhenoGen Yipf4l1 PhenoGen
RatGTEx ENSRNOG00000005610 RatGTEx
  ENSRNOG00000065148 RatGTEx
UniProt A0A8L2Q3C8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Yipf4l1  Yip1 domain family, member 4 like 1  RGD1565766  hypothetical gene supported by BC088468; NM_001009712  Symbol and Name Changed 1299863 APPROVED
2022-06-02 RGD1565766  hypothetical gene supported by BC088468; NM_001009712  ENSRNOG00000065148    Data merged from RGD:150341270 737654 PROVISIONAL
2021-08-31 ENSRNOG00000065148        Symbol and Name status set to provisional 45752 PROVISIONAL
2013-05-24 RGD1565766  hypothetical gene supported by BC088468; NM_001009712  LOC100365314  Yip1 domain family, member 4-like  Data merged from RGD:2319264 1643240 APPROVED
2010-05-05 LOC100365314  Yip1 domain family, member 4-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1565766  hypothetical gene supported by BC088468; NM_001009712   RGD1565766_predicted  hypothetical gene supported by BC088468; NM_001009712 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565766_predicted  hypothetical gene supported by BC088468; NM_001009712 (predicted)  LOC500622  hypothetical gene supported by BC088468; NM_001009712  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500622  hypothetical gene supported by BC088468; NM_001009712      Symbol and Name status set to provisional 70820 PROVISIONAL