Cript (CXXC repeat containing interactor of PDZ3 domain)

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Gene: Cript (CXXC repeat containing interactor of PDZ3 domain) Rattus norvegicus

Analyze

Symbol:

Cript

Name:

CXXC repeat containing interactor of PDZ3 domain

RGD ID:

621545

Description:

Exhibits PDZ domain binding activity and microtubule binding activity. Involved in several processes, including cytoplasmic microtubule organization; protein localization to microtubule; and regulation of postsynaptic density protein 95 clustering. Localizes to dendrite; neuronal cell body; and postsynaptic density. Orthologous to human CRIPT (CXXC repeat containing interactor of PDZ3 domain); INTERACTS WITH 2,6-dinitrotoluene; 3H-1,2-dithiole-3-thione; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

cysteine-rich interactor of PDZ three; cysteine-rich interactor of PDZ3; cysteine-rich PDZ-binding protein; postsynaptic protein Cript

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	7,581,428 - 7,589,384 (-)	NCBI
Rnor_6.0 Ensembl	6	10,594,122 - 10,602,085 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	10,594,147 - 10,602,103 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	20,582,664 - 20,590,620 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	10,475,037 - 10,482,993 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	10,475,036 - 10,482,992 (+)	NCBI
Celera	6	7,316,891 - 7,324,847 (-)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

isolated growth hormone deficiency type IA (ISO)

SHORT STATURE WITH MICROCEPHALY AND DISTINCTIVE FACIES (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3H-1,2-dithiole-3-thione (EXP)

ammonium chloride (EXP)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

disulfiram (ISO)

doxorubicin (ISO)

flavonoids (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

isobutanol (ISO)

isotretinoin (ISO)

leflunomide (ISO)

methyl methanesulfonate (ISO)

perfluorooctane-1-sulfonic acid (EXP)

quercetin (ISO)

rac-lactic acid (ISO)

urethane (ISO)

valproic acid (ISO)

vincaleukoblastine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytoplasmic microtubule organization (IBA,IDA)

establishment of protein localization (IDA)

protein localization to microtubule (IMP)

regulation of postsynaptic density protein 95 clustering (IMP)

Cellular Component

cytoplasm (IEA)

dendrite (IBA,IDA)

dendritic shaft (IDA)

dendritic spine (IDA)

neuronal cell body (IDA)

postsynaptic density (IDA)

Molecular Function

microtubule binding (IBA,IMP)

PDZ domain binding (IBA,IDA,ISO)

protein binding (ISO)

protein-containing complex binding (IPI)

scaffold protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
3.	Niethammer M, etal., Neuron 1998 Apr;20(4):693-707.
4.	Passafaro M, etal., Nat Neurosci. 1999 Dec;2(12):1063-9.
5.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	RGD automated import pipeline for gene-chemical interactions
7.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:9786987	PMID:17474715	PMID:32157575

Genomics

Comparative Map Data

Cript
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	7,581,428 - 7,589,384 (-)	NCBI
Rnor_6.0 Ensembl	6	10,594,122 - 10,602,085 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	10,594,147 - 10,602,103 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	20,582,664 - 20,590,620 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	10,475,037 - 10,482,993 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	10,475,036 - 10,482,992 (+)	NCBI
Celera	6	7,316,891 - 7,324,847 (-)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

CRIPT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	46,616,416 - 46,630,176 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	46,617,215 - 46,630,176 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	46,844,354 - 46,857,315 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	46,697,812 - 46,705,690 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	46,755,958 - 46,763,834	NCBI
Celera	2	46,683,006 - 46,691,562 (+)	NCBI
Cytogenetic Map	2	p21	NCBI
HuRef	2	46,581,752 - 46,590,308 (+)	NCBI		HuRef
CHM1_1	2	46,774,605 - 46,787,606 (+)	NCBI		CHM1_1

Cript
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	87,332,989 - 87,343,236 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	17	87,332,978 - 87,343,238 (+)	Ensembl
GRCm38	17	87,025,561 - 87,035,808 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	87,025,550 - 87,035,810 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	87,424,901 - 87,435,148 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	17	86,933,922 - 86,944,136 (+)	NCBI			mm8
Celera	17	91,403,072 - 91,413,302 (+)	NCBI		Celera
Cytogenetic Map	17	E4	NCBI

Cript
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955441	13,525,686 - 13,533,458 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955441	13,525,686 - 13,533,458 (+)	NCBI	ChiLan1.0	ChiLan1.0

CRIPT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	47,663,304 - 47,671,463 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	47,663,304 - 47,671,463 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	46,732,683 - 46,740,589 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

CRIPT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	10	48,839,509 - 48,851,258 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	10	48,840,243 - 48,851,461 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Cript
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936508	5,650,057 - 5,658,966 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CRIPT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	93,911,425 - 93,925,916 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	100,002,179 - 100,010,007 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CRIPT
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	60,564,994 - 60,572,929 (-)	NCBI

Cript
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624738	28,067,615 - 28,079,593 (+)	NCBI

Position Markers

RH141427

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	10,601,762 - 10,601,976	NCBI	Rnor6.0
Rnor_5.0	6	20,590,279 - 20,590,493	UniSTS	Rnor5.0
RGSC_v3.4	6	10,482,652 - 10,482,866	UniSTS	RGSC3.4
Celera	6	7,317,018 - 7,317,232	UniSTS
Cytogenetic Map	6	q12	UniSTS

RH132997

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	10,596,748 - 10,596,928	NCBI	Rnor6.0
Rnor_5.0	6	20,585,265 - 20,585,445	UniSTS	Rnor5.0
RGSC_v3.4	6	10,477,638 - 10,477,818	UniSTS	RGSC3.4
Celera	6	7,322,066 - 7,322,246	UniSTS
Cytogenetic Map	6	q12	UniSTS

RH138667

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	10,601,158 - 10,601,303	NCBI	Rnor6.0
Rnor_5.0	6	20,589,675 - 20,589,820	UniSTS	Rnor5.0
RGSC_v3.4	6	10,482,048 - 10,482,193	UniSTS	RGSC3.4
Celera	6	7,317,691 - 7,317,836	UniSTS
Cytogenetic Map	6	q12	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	23620518	Rat
1578758	Tcas9	Tongue tumor susceptibility QTL 9	3.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	6	1	25048718	Rat
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	35623029	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	35623029	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	35623029	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	35623029	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	35623029	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	41917988	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	42388212	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	42388212	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42388212	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	42388212	Rat
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	42388212	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	43665660	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	43665660	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	43665660	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	44015370	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	44570292	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	75623393	Rat
8693645	Alc31	Alcohol consumption QTL 31	3.7	0.038	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	135053	23600274	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	1120393	28706721	Rat
2292589	Emca10	Estrogen-induced mammary cancer QTL 10		0.048	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	1120393	46120393	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	1120393	75023446	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	2537030	111715717	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	6161722	76002731	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	6161722	76002731	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	7009971	115379601	Rat
1358190	Ept1	Estrogen-induced pituitary tumorigenesis QTL 1	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	8083222	21515439	Rat
2292616	Ept15	Estrogen-induced pituitary tumorigenesis QTL 15	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	8083222	21515439	Rat
8693699	Alc37	Alcohol consumption QTL 37	2.6	0.224	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	9974277	22477622	Rat
8693690	Alc35	Alcohol consumption QTL 35	2.2	0.606	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	9974277	22477622	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	10173862	55173862	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	123
Count of miRNA genes:	94
Interacting mature miRNAs:	109
Transcripts:	ENSRNOT00000020534
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	39	11	8
Low											2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF047384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC058146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000020534 ⟹ ENSRNOP00000020534

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	10,594,122 - 10,602,085 (+)	Ensembl

RefSeq Acc Id:

NM_019907 ⟹ NP_063972

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	7,581,428 - 7,589,384 (-)	NCBI
Rnor_6.0	6	10,594,147 - 10,602,103 (+)	NCBI
Rnor_5.0	6	20,582,664 - 20,590,620 (+)	NCBI
RGSC_v3.4	6	10,475,037 - 10,482,993 (+)	RGD
Celera	6	7,316,891 - 7,324,847 (-)	RGD

Sequence:

show sequence

TGATGTATTTTGGCAGCTGCTCCTGCTTTGCGGGTTGAGGGGGACAGGACGACCCGTGGAAGGA
TGGTGTGTGAAAAGTGTGAAAAGAAACTCGGCAGGGTTATCACTCCAGACACATGGAAGGACGG
GGCCCGGAACACCACAGAAAGTGGTGGAAGGAAGCTGAACGAAAACAAAGCTCTGACTTCGAAG
AAAGCAAGGTTTGATCCATATGGAAAAAATAAGTTCTCCACTTGCAGAATTTGTAAAAGTTCTG
TACACCAGCCAGGTTCTCATTACTGTCAAGGCTGTGCCTACAAGAAAGGCATCTGTGCGATGTG
TGGCAAAAAGGTTTTGGATACTAAAAACTACAAGCAGACTTCCGTCTAGTCTGTTGAAGATTCC
AACTCTACGGTTGTATTTGTGCTTCAGCTTTTCAAGCGTAACACGGATGTCCATCTCACAAAAT
GACCTGTTTGAGGATGAATGATTCAGTCTGAAGCAGGGACGTTGATCAGTATTGATCTGTCTGC
TCTCATGAAGTTGTGAATGAAGTTTCTGCCTTAGGTGGTTATTTTCCTTGTGAGCATTTTACTG
AACTAGATAAGTGACAAAATTAATGAACGAGGTTTCCCAACTTGTGTACGCACTGTCTACTCGA
CATTATCTAATTAATGAGTACGCACTGTCTACTCGACATTATCTGTATAATTAATGAGTAAGGT
GTTCCCTACTTCTGTACGCACTGTCTACTAGACATTATCCATATAATTCCTATCTGACCCACGC
GTTTTATTTATAGATATTGCAAATGTGAAATCACTGATTCTTTGCTCTGAACTTGACATCCAGA
CTTGAGATTTCTCACTTTCTCACAAACATTGCAGTTCTTAGAACAAACAGGGCCTTAGTTACTG
CATTTTCATGAGCTATAATGTCTGAGACCATTTTTGCAGAGTGGTTCCTTGGTGACCAGTCCTG
CCACAAGTCTAAGATAAGTTGCATTTTTATTTAAAGTTGCTGTTGCTGCTAAAGTGAGTTTCTT
TTACGTGTGACTGAGTGCCATGGGGCCCGATGTCCAGGCAGACACTGAAGTTCAGAGACGTGCG
TTCTGTCAGCATTATCTTAAATTCAAATGAGAATACATTTATTCTGTTTGGGAATGTTCTTTGA
AGAAGGATACATAGCTTTCCTTAACACCCCCCAACCCCCGCTGCCACTTCCTCAGAAATAAAGC
AGGCCTCTGGCCTCTGACATTGCTGCAGCCTGCCAGGGGGCTGCTGTGAATGAAGGTTTTTCTT
GTTGCCTTCTTTGGGTTGGGCCTTCCACCTTTAAAACCCTCAGCCTACCCAGAGACCAAAAGCA
TATTCTCTGTTTTTATCTGCAGGATCTTAAATGCATATCACTGTGTAATGTGAGACCTACTATA
AACAATGAAAAAATAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_063972	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC40102	(Get FASTA)	NCBI Sequence Viewer
	EDM02654	(Get FASTA)	NCBI Sequence Viewer
	EDM02655	(Get FASTA)	NCBI Sequence Viewer
	Q792Q4	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_063972 ⟸ NM_019907
- UniProtKB:	Q792Q4 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRICKSS VHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV hide sequence

RefSeq Acc Id:

ENSRNOP00000020534 ⟸ ENSRNOT00000020534

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694389

Promoter ID:

EPDNEW_R4914

Type:

initiation region

Name:

Cript_1

Description:

CXXC repeat containing interactor of PDZ3 domain

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	10,594,140 - 10,594,200	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621545	AgrOrtholog
Ensembl Genes	ENSRNOG00000015215	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000020534	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000020534	ENTREZGENE, UniProtKB/Swiss-Prot
InterPro	PDZ-binding_CRIPT	UniProtKB/Swiss-Prot
KEGG Report	rno:56725	UniProtKB/Swiss-Prot
NCBI Gene	56725	ENTREZGENE
PANTHER	PTHR11805	UniProtKB/Swiss-Prot
Pfam	Cript	UniProtKB/Swiss-Prot
PhenoGen	Cript	PhenoGen
UniProt	CRIPT_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-03	Cript	CXXC repeat containing interactor of PDZ3 domain	Cript	cysteine-rich PDZ-binding protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-25	Cript	cysteine-rich PDZ-binding protein	Cript	postsynaptic protein Cript	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Cript	postsynaptic protein Cript			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Cript				Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the postsynaptic density	632510
gene_physical_interaction	binds to the third PDZ domain of PSD-95 via its C terminus	632510

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM