Slc30a3 (solute carrier family 30 member 3) - Rat Genome Database

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Gene: Slc30a3 (solute carrier family 30 member 3) Rattus norvegicus
Analyze
Symbol: Slc30a3
Name: solute carrier family 30 member 3
RGD ID: 1359689
Description: Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in response to zinc ion; zinc ion import into lysosome; and zinc ion import into synaptic vesicle. Predicted to act upstream of or within positive regulation of transport. Predicted to be located in hippocampal mossy fiber; late endosome; and synaptic vesicle. Predicted to be active in several cellular components, including hippocampal mossy fiber to CA3 synapse; microvesicle; and synaptic vesicle membrane. Orthologous to human SLC30A3 (solute carrier family 30 member 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: probable proton-coupled zinc antiporter SLC30A3; solute carrier family 30 (zinc transporter), member 3; solute carrier family 30 protein; zinc transporter 3; zinc transporter ZnT-3; znT-3; ZnT3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,984,241 - 31,004,689 (+)NCBIGRCr8
mRatBN7.2625,264,310 - 25,284,720 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,275,528 - 25,284,720 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,578,283 - 25,585,330 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,894,141 - 25,901,188 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,373,121 - 25,380,171 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,629,752 - 26,650,106 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,642,783 - 26,650,105 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,457,851 - 36,464,874 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,257,765 - 25,264,794 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1625,260,717 - 25,267,747 (+)NCBI
Celera624,768,548 - 24,775,600 (+)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Elimination of zinc from synaptic vesicles in the intact mouse brain by disruption of the ZnT3 gene. Cole TB, etal., Proc Natl Acad Sci U S A 1999 Feb 16;96(4):1716-21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Urine Proteome Changes in a TNBS-Induced Colitis Rat Model. Qin W, etal., Proteomics Clin Appl. 2019 Sep;13(5):e1800100. doi: 10.1002/prca.201800100. Epub 2019 May 28.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8. Regulation of zinc transporter 3 and carbonic anhydrases 2 and 14 mRNA expression in the retina of rats affected by low dietary zinc. Zhang PB, etal., Genet Mol Res. 2014 Feb 19;13(1):963-71. doi: 10.4238/2014.February.19.7.
Additional References at PubMed
PMID:15860731   PMID:17349999   PMID:19059322   PMID:19521526   PMID:20167268   PMID:21208276   PMID:21998198   PMID:22427991   PMID:25778834   PMID:26647834   PMID:29476059   PMID:29687372  
PMID:36373349  


Genomics

Comparative Map Data
Slc30a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,984,241 - 31,004,689 (+)NCBIGRCr8
mRatBN7.2625,264,310 - 25,284,720 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,275,528 - 25,284,720 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,578,283 - 25,585,330 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,894,141 - 25,901,188 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,373,121 - 25,380,171 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,629,752 - 26,650,106 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,642,783 - 26,650,105 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,457,851 - 36,464,874 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,257,765 - 25,264,794 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1625,260,717 - 25,267,747 (+)NCBI
Celera624,768,548 - 24,775,600 (+)NCBICelera
Cytogenetic Map6q14NCBI
SLC30A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,253,684 - 27,275,817 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,253,684 - 27,275,817 (-)EnsemblGRCh38hg38GRCh38
GRCh37227,476,552 - 27,498,685 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,330,944 - 27,339,464 (-)NCBINCBI36Build 36hg18NCBI36
Build 34227,389,091 - 27,397,611NCBI
Celera227,323,767 - 27,332,284 (-)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef227,219,146 - 27,227,667 (-)NCBIHuRef
CHM1_1227,407,345 - 27,415,865 (-)NCBICHM1_1
T2T-CHM13v2.0227,295,330 - 27,317,459 (-)NCBIT2T-CHM13v2.0
Slc30a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,243,450 - 31,265,576 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,243,450 - 31,265,581 (-)EnsemblGRCm39 Ensembl
GRCm38531,086,106 - 31,108,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,086,106 - 31,108,237 (-)EnsemblGRCm38mm10GRCm38
MGSCv37531,388,479 - 31,395,900 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,364,530 - 31,370,079 (-)NCBIMGSCv36mm8
Celera528,564,559 - 28,571,976 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.97NCBI
Slc30a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,235,104 - 9,254,964 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,235,159 - 9,254,291 (-)NCBIChiLan1.0ChiLan1.0
SLC30A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,237,770 - 99,258,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,241,738 - 99,262,537 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,255,944 - 27,276,720 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,344,045 - 27,364,820 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,344,045 - 27,353,543 (-)Ensemblpanpan1.1panPan2
SLC30A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,230,918 - 21,239,598 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,231,611 - 21,239,564 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1721,122,730 - 21,131,394 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,551,935 - 21,560,599 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,551,943 - 21,560,605 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,238,677 - 21,247,341 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,249,720 - 21,258,379 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,296,622 - 21,305,293 (-)NCBIUU_Cfam_GSD_1.0
Slc30a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,536,696 - 65,555,742 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,293,822 - 5,304,029 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,292,278 - 5,302,862 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC30A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,870,681 - 111,879,324 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,870,803 - 111,878,234 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC30A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,348,513 - 80,360,339 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,355,127 - 80,361,544 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,794,087 - 31,804,626 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc30a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,348,303 - 9,356,908 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,348,600 - 9,356,852 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc30a3
128 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:77
Interacting mature miRNAs:91
Transcripts:ENSRNOT00000008126
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)61653614027261739Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat

Markers in Region
RH137144  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2625,284,521 - 25,284,705 (+)MAPPERmRatBN7.2
Rnor_6.0626,649,908 - 26,650,091NCBIRnor6.0
Rnor_5.0636,464,899 - 36,465,082UniSTSRnor5.0
RGSC_v3.4625,264,819 - 25,265,002UniSTSRGSC3.4
Celera624,775,625 - 24,775,808UniSTS
RH 3.4 Map691.2UniSTS
Cytogenetic Map6q14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000008126   ⟹   ENSRNOP00000008126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,277,445 - 25,284,497 (+)Ensembl
Rnor_6.0 Ensembl626,642,783 - 26,650,105 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102704   ⟹   ENSRNOP00000090098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,275,528 - 25,284,720 (+)Ensembl
RefSeq Acc Id: NM_001013243   ⟹   NP_001013261
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,997,414 - 31,004,466 (+)NCBI
mRatBN7.2625,277,445 - 25,284,497 (+)NCBI
Rnor_6.0626,642,830 - 26,649,883 (+)NCBI
Rnor_5.0636,457,851 - 36,464,874 (+)NCBI
RGSC_v3.4625,257,765 - 25,264,794 (+)RGD
Celera624,768,548 - 24,775,600 (+)RGD
Sequence:
RefSeq Acc Id: XM_008764526   ⟹   XP_008762748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,984,242 - 31,004,689 (+)NCBI
mRatBN7.2625,264,310 - 25,284,720 (+)NCBI
Rnor_6.0626,629,752 - 26,650,106 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764527   ⟹   XP_008762749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,995,711 - 31,004,689 (+)NCBI
mRatBN7.2625,275,727 - 25,284,720 (+)NCBI
Rnor_6.0626,641,091 - 26,650,106 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764528   ⟹   XP_008762750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,996,142 - 31,004,689 (+)NCBI
mRatBN7.2625,276,044 - 25,284,720 (+)NCBI
Rnor_6.0626,641,400 - 26,650,106 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112621   ⟹   XP_038968549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,984,241 - 31,004,689 (+)NCBI
mRatBN7.2625,264,310 - 25,284,720 (+)NCBI
RefSeq Acc Id: XM_039112622   ⟹   XP_038968550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,995,711 - 31,004,689 (+)NCBI
mRatBN7.2625,275,726 - 25,284,720 (+)NCBI
RefSeq Acc Id: NP_001013261   ⟸   NM_001013243
- UniProtKB: Q5RJT1 (UniProtKB/Swiss-Prot),   Q6QIX3 (UniProtKB/Swiss-Prot),   A0A8I6AD52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762748   ⟸   XM_008764526
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AD52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762749   ⟸   XM_008764527
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AD52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762750   ⟸   XM_008764528
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AD52 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008126   ⟸   ENSRNOT00000008126
RefSeq Acc Id: XP_038968549   ⟸   XM_039112621
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AD52 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968550   ⟸   XM_039112622
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AD52 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090098   ⟸   ENSRNOT00000102704

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6QIX3-F1-model_v2 AlphaFold Q6QIX3 1-388 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694449
Promoter ID:EPDNEW_R4972
Type:multiple initiation site
Name:Slc30a3_1
Description:solute carrier family 30 member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,642,756 - 26,642,816EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359689 AgrOrtholog
BioCyc Gene G2FUF-38343 BioCyc
Ensembl Genes ENSRNOG00000006204 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000008126 ENTREZGENE
  ENSRNOT00000008126.8 UniProtKB/Swiss-Prot
  ENSRNOT00000137304 ENTREZGENE
  ENSRNOT00000150088 ENTREZGENE
Gene3D-CATH 1.20.1510.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7134069 IMAGE-MGC_LOAD
InterPro Cation_efflux UniProtKB/Swiss-Prot
  Cation_efflux_CTD_sf UniProtKB/Swiss-Prot
  Cation_efflux_TMD_sf UniProtKB/Swiss-Prot
  CDF/SLC30A UniProtKB/Swiss-Prot
KEGG Report rno:366568 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105899 IMAGE-MGC_LOAD
NCBI Gene 366568 ENTREZGENE
PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER UniProtKB/Swiss-Prot
  ZINC TRANSPORTER 3 UniProtKB/Swiss-Prot
Pfam Cation_efflux UniProtKB/Swiss-Prot
PhenoGen Slc30a3 PhenoGen
RatGTEx ENSRNOG00000006204 RatGTEx
Superfamily-SCOP SSF160240 UniProtKB/Swiss-Prot
  SSF161111 UniProtKB/Swiss-Prot
UniProt A0A8I6AD52 ENTREZGENE, UniProtKB/TrEMBL
  Q5RJT1 ENTREZGENE
  Q6QIX3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5RJT1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc30a3  solute carrier family 30 member 3  Slc30a3  solute carrier family 30 (zinc transporter), member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Slc30a3  solute carrier family 30 (zinc transporter), member 3  ZnT3  zinc transporter ZnT-3  Symbol and Name updated 1299863 APPROVED
2005-07-29 ZnT3  zinc transporter ZnT-3      Symbol and Name status set to provisional 70820 PROVISIONAL