Slc30a3 (solute carrier family 30 member 3)

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Gene: Slc30a3 (solute carrier family 30 member 3) Rattus norvegicus

Analyze

Symbol:

Slc30a3

Name:

solute carrier family 30 member 3

RGD ID:

1359689

Description:

Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in regulation of sequestering of zinc ion; response to zinc ion; and zinc ion import into synaptic vesicle. Predicted to act upstream of or within positive regulation of transport. Predicted to be located in hippocampal mossy fiber; late endosome; and synaptic vesicle. Predicted to be active in several cellular components, including glutamatergic synapse; hippocampal mossy fiber to CA3 synapse; and synaptic vesicle membrane. Orthologous to human SLC30A3 (solute carrier family 30 member 3); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

probable proton-coupled zinc antiporter SLC30A3; solute carrier family 30 (zinc transporter), member 3; solute carrier family 30 protein; zinc transporter 3; zinc transporter ZnT-3; znT-3; ZnT3

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	25,264,310 - 25,284,720 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	25,275,528 - 25,284,720 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	25,578,283 - 25,585,330 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	6	25,894,141 - 25,901,188 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	6	25,373,121 - 25,380,171 (+)	NCBI	Rnor_WKY
Rnor_6.0	6	26,629,752 - 26,650,106 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	26,642,783 - 26,650,105 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	36,457,851 - 36,464,874 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	25,257,765 - 25,264,794 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	25,260,717 - 25,267,747 (+)	NCBI
Celera	6	24,768,548 - 24,775,600 (+)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Febrile Seizures (ISO)

short-rib thoracic dysplasia 10 with or without polydactyly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

aldehydo-D-glucose (EXP,ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

bafilomycin A1 (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (EXP)

carmustine (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP)

cisplatin (EXP,ISO)

clofibrate (ISO)

Cuprizon (EXP)

D-glucose (EXP,ISO)

dichloroacetic acid (ISO)

disodium selenite (ISO)

ethanol (EXP,ISO)

fluoxetine (EXP)

flurotyl (EXP)

folic acid (ISO)

gentamycin (EXP)

glucose (EXP,ISO)

lead(0) (ISO)

lead(2+) (ISO)

ozone (EXP)

paracetamol (EXP)

paraquat (EXP)

pentanal (ISO)

propanal (ISO)

reactive oxygen species (EXP)

silicon dioxide (ISO)

sunitinib (ISO)

temozolomide (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triphenyl phosphate (EXP)

triptonide (ISO)

valproic acid (ISO)

vanadium atom (ISO)

vanadium(0) (ISO)

vinclozolin (EXP)

zidovudine (ISO)

zinc atom (EXP,ISO)

zinc(0) (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

monoatomic cation transmembrane transport (IEA)

positive regulation of transport (ISO)

regulation of sequestering of zinc ion (IBA,ISO)

response to zinc ion (IBA)

zinc ion import into synaptic vesicle (ISO)

zinc ion transmembrane transport (IBA,ISO,ISS)

Cellular Component

cytoplasm (ISO)

glutamatergic synapse (ISO)

hippocampal mossy fiber (ISO)

hippocampal mossy fiber to CA3 synapse (ISO)

late endosome (ISO)

late endosome membrane (IEA)

lysosomal membrane (IEA)

membrane (IEA)

neuron projection (ISO,ISS)

obsolete integral component of synaptic vesicle membrane (ISO)

plasma membrane (IBA)

synaptic vesicle (ISO,ISS)

synaptic vesicle membrane (ISO)

Molecular Function

antiporter activity (IEA)

metal ion binding (IEA)

monoatomic cation transmembrane transporter activity (IEA)

protein binding (ISO)

zinc ion transmembrane transporter activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Elimination of zinc from synaptic vesicles in the intact mouse brain by disruption of the ZnT3 gene.	Cole TB, etal., Proc Natl Acad Sci U S A 1999 Feb 16;96(4):1716-21.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15860731	PMID:17349999	PMID:19059322	PMID:19521526	PMID:20167268	PMID:21208276	PMID:21998198	PMID:22427991	PMID:25778834	PMID:26647834	PMID:29476059	PMID:29687372
PMID:36373349

Genomics

Comparative Map Data

Slc30a3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	25,264,310 - 25,284,720 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	25,275,528 - 25,284,720 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	25,578,283 - 25,585,330 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	6	25,894,141 - 25,901,188 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	6	25,373,121 - 25,380,171 (+)	NCBI	Rnor_WKY
Rnor_6.0	6	26,629,752 - 26,650,106 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	26,642,783 - 26,650,105 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	36,457,851 - 36,464,874 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	25,257,765 - 25,264,794 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	25,260,717 - 25,267,747 (+)	NCBI
Celera	6	24,768,548 - 24,775,600 (+)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

SLC30A3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	27,253,684 - 27,275,817 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	27,253,684 - 27,275,817 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	27,476,552 - 27,498,685 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	27,330,944 - 27,339,464 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	27,389,091 - 27,397,611	NCBI
Celera	2	27,323,767 - 27,332,284 (-)	NCBI		Celera
Cytogenetic Map	2	p23.3	NCBI
HuRef	2	27,219,146 - 27,227,667 (-)	NCBI		HuRef
CHM1_1	2	27,407,345 - 27,415,865 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	27,295,330 - 27,317,459 (-)	NCBI		T2T-CHM13v2.0

Slc30a3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	31,243,450 - 31,265,588 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	31,243,450 - 31,265,581 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	31,086,106 - 31,108,244 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	31,086,106 - 31,108,237 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	31,388,479 - 31,395,900 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	31,364,530 - 31,370,079 (-)	NCBI		MGSCv36	mm8
Celera	5	28,564,559 - 28,571,976 (-)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI
cM Map	5	16.97	NCBI

Slc30a3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	9,235,104 - 9,254,964 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955469	9,235,159 - 9,254,291 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC30A3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	27,344,045 - 27,364,820 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	27,344,045 - 27,353,543 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	27,255,944 - 27,276,720 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

SLC30A3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	21,230,918 - 21,239,598 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	21,231,611 - 21,239,564 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	21,122,730 - 21,131,394 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	21,551,935 - 21,560,599 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	21,551,943 - 21,560,605 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	21,238,677 - 21,247,341 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	21,249,720 - 21,258,379 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	21,296,622 - 21,305,293 (-)	NCBI		UU_Cfam_GSD_1.0

Slc30a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	65,536,696 - 65,555,742 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	5,293,822 - 5,304,029 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936493	5,292,278 - 5,302,862 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC30A3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	111,870,681 - 111,879,324 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	111,870,803 - 111,878,234 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SLC30A3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	80,348,513 - 80,360,339 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	80,355,127 - 80,361,544 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	31,794,087 - 31,804,626 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc30a3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	9,348,303 - 9,356,908 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	9,348,600 - 9,356,852 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc30a3
87 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	96
Count of miRNA genes:	77
Interacting mature miRNAs:	91
Transcripts:	ENSRNOT00000008126
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	27574569	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	27574569	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	27574569	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	27574569	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	27574569	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	34235784	Rat
1578758	Tcas9	Tongue tumor susceptibility QTL 9	3.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	6	1	37618905	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	39036266	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	41223769	Rat
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	41223769	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	41223769	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	41223769	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	41223769	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	42487980	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	42487980	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	42487980	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42838846	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	43394190	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	72227641	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	34434305	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	54641141	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	11735669	72593685	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	11735669	72593685	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	14368788	59368788	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	14368788	59368788	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	15107216	107351382	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	16536140	27261739	Rat
2292589	Emca10	Estrogen-induced mammary cancer QTL 10		0.048	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	16536140	61536140	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	16536140	71636405	Rat
1641898	Colcr4	Colorectal carcinoma resistance QTL4	3.71	0.0007	intestine integrity trait (VT:0010554)	well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)	6	20338777	62613667	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	20866422	81133036	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	20866422	81133036	Rat

Markers in Region

RH137144

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	25,284,521 - 25,284,705 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	26,649,908 - 26,650,091	NCBI	Rnor6.0
Rnor_5.0	6	36,464,899 - 36,465,082	UniSTS	Rnor5.0
RGSC_v3.4	6	25,264,819 - 25,265,002	UniSTS	RGSC3.4
Celera	6	24,775,625 - 24,775,808	UniSTS
RH 3.4 Map	6	91.2	UniSTS
Cytogenetic Map	6	q14	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		34						1	44		8
Low	3	9	35	25	6	25	6	8	30	35	33	11	6
Below cutoff			22	16	13	16	2	2					2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ458940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY538655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000008126 ⟹ ENSRNOP00000008126

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	25,277,445 - 25,284,497 (+)	Ensembl
Rnor_6.0 Ensembl	6	26,642,783 - 26,650,105 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102704 ⟹ ENSRNOP00000090098

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	25,275,528 - 25,284,720 (+)	Ensembl

RefSeq Acc Id:

NM_001013243 ⟹ NP_001013261

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	25,277,445 - 25,284,497 (+)	NCBI
Rnor_6.0	6	26,642,830 - 26,649,883 (+)	NCBI
Rnor_5.0	6	36,457,851 - 36,464,874 (+)	NCBI
RGSC_v3.4	6	25,257,765 - 25,264,794 (+)	RGD
Celera	6	24,768,548 - 24,775,600 (+)	RGD

Sequence:

show sequence

TTTGGGCCGCTGGGATTTGGCGCAAGGCCTGCCCCGCCTCACCCCCTCTGTGCGGCCTAGACGG
TCGAGGCAGCGGGGACATGGAACCTTCTCCGGCCAGCGGAGGCTCGGAGACCACCCGCCTAGTG
AGTCCCCGAGACCGCAGCAGCGCCGGCGGCGGCCTGCGATTGAAGAGTCTTTTCACAGAGCCCT
CAGAGCCCCTGCCGGAGGGGCCCAAGCTTGAGGGGATGGCCTTCCACCACTGCCACAAGAACCG
CGTGTCTCAGTCAGGCCTCTCTCCAGAGAGGGCGCAGGCCCGGAGGCAGCTGTATGCTGCCTGC
GTCGTGTGCTTCATCTTCATGGCTGGGGAGGTGGTTGGTGGGTATTTAGCACACAGCTTGGCCA
TCATGACCGACGCCGCCCACTTGCTGGCAGACATAGGCAGTATGATGGCCAGCCTCTTTTCCCT
CTGGCTCTCTACTCGGCCAGCCACCCGCACCATGACCTTTGGCTGGCACCGCTCAGAGACTCTG
GGAGCTTTGGCCTCCGTGGTCTCCCTCTGGATAGTCACCGGCATCCTCCTGTACCTGGCCTTCC
TCCGCCTGCTTCACAGTGACTACCACATTGAGGCGGGCGCCATGCTGCTGACTGCCAGCATTGC
TGTCTGTGCCAACATGATAATGGCCTTTGTGCTGCACCAGACTGGAGCCCCCCACAGCCACGGA
CCTAGGGGTGCAGAGTATGCACCACTGGAGGAGGGGCACGGGCACCCACTGTCCCTGGGAAACA
CCAGTGTCCGGGCTGCCTTTGTGCATGTGCTGGGAGATCTCCTTCAGAGCCTCGGGGTCCTGGC
CGCCTCTATCCTCATCTACTTCAAGCCCCAGTACAAGGTGGCCGACCCCATCAGCACCTTCCTC
TTCTCTATCTGCGCCCTTGGGTCCACAGCTCCTACACTTCGAGATGTTCTCCTCGTCCTCATGG
AAGGTGCCCCTCGGAGTGTGGAATTTGAGCCTGTAAGGGACACCTTGTTGTCAGTGCCGGGTGT
CCGAGCCACCCATGATCTCCACCTGTGGGCGCTGACGCTTACTTACCACGTTGCCTCCGCACAC
CTGGCTATTGACTCCACGGCTGACCCTGAAGCCATCCTGGCTGAAGCCTCATCCCGGCTCTATT
CCCGGTTTGGATTCTCTAGCTGCACCCTGCAGGTGGAGAAATACCGGTCTGAGATGGCCCACTG
TCTTCGCTGCCGGGAGCCCCCCAAAGCCTGAGCCTCAGCCCCACCCTCGCCCCACTGCCAGGAC
TAGGCTTGTGCCTGGACCCTCAGCACCTGCCTCCCAGATCACAGAAGAGACCTTTCTCTCTCCA
TCTTCCACCTGCCAAATGCCCTCACCCCTGCCCCGGTGGTCAAGACCAAAGTGTATATGAAGGC
AGTGGGGGGAGGGGAGGATCGGATTGAATAGCTGTAAGCGATTCAGGGGTGTGGGGCGTGTGGA
AGCCCCCTGCCATCCGTGCTCCACATGGAGAGAGTCATGCTTGTCCTCTACGATTCCTGTGTCC
CTGTGGCAGGCTGGCTGGCTAGCTGGGGACATCTGCCTGTCTGTGTGCTGTTCGTGTGCCTATG
CCTGGGGAGGTCAGCAGGGGCCCCCTCCCCACGTGATCCTTGCTCTTGTCTATGCAGGGGCCCC
AAAGCCTGCACTTTGTTTGTGTGCCA

hide sequence

RefSeq Acc Id:

XM_008764526 ⟹ XP_008762748

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	25,264,310 - 25,284,720 (+)	NCBI
Rnor_6.0	6	26,629,752 - 26,650,106 (+)	NCBI

Sequence:

show sequence

GGCTCAGGGCTGAGCGTTACTTCCAGCACAGCCTTCCACATCATCCCTCTTCCCTTAGGAGAGG
CCATGACCATCCCGATCACCGTCACGGGTCTTCAACTCACTCACGGAAAAACTATGGGCTTGGT
GACCTAGCAGATGAGAGTGGCGGCAGGTGCGAAGAGTAGAGAGCACTGAGCATTTGAAGTTTCC
GTCAGACCCCAGCCTTAACCACCGACGGCTTCTTTTCACAGAGCCCTCAGAGCCCCTGCCGGAG
GGGCCCAAGCTTGAGGGGATGGCCTTCCACCACTGCCACAAGAACCGCGTGTCTCAGTCAGGCC
TCTCTCCAGAGAGGGCGCAGGCCCGGAGGCAGCTGTATGCTGCCTGCGTCGTGTGCTTCATCTT
CATGGCTGGGGAGGTGGTTGGTGGGTATTTAGCACACAGCTTGGCCATCATGACCGACGCCGCC
CACTTGCTGGCAGACATAGGCAGTATGATGGCCAGCCTCTTTTCCCTCTGGCTCTCTACTCGGC
CAGCCACCCGCACCATGACCTTTGGCTGGCACCGCTCAGAGACTCTGGGAGCTTTGGCCTCCGT
GGTCTCCCTCTGGATAGTCACCGGCATCCTCCTGTACCTGGCCTTCCTCCGCCTGCTTCACAGT
GACTACCACATTGAGGCGGGCGCCATGCTGCTGACTGCCAGCATTGCTGTCTGTGCCAACATGA
TAATGGCCTTTGTGCTGCACCAGACTGGAGCCCCCCACAGCCACGGACCTAGGGGTGCAGAGTA
TGCACCACTGGAGGAGGGGCACGGGCACCCACTGTCCCTGGGAAACACCAGTGTCCGGGCTGCC
TTTGTGCATGTGCTGGGAGATCTCCTTCAGAGCCTCGGGGTCCTGGCCGCCTCTATCCTCATCT
ACTTCAAGCCCCAGTACAAGGTGGCCGACCCCATCAGCACCTTCCTCTTCTCTATCTGCGCCCT
TGGGTCCACAGCTCCTACACTTCGAGATGTTCTCCTCGTCCTCATGGAAGGTGCCCCTCGGAGT
GTGGAATTTGAGCCTGTAAGGGACACCTTGTTGTCAGTGCCGGGTGTCCGAGCCACCCATGATC
TCCACCTGTGGGCGCTGACGCTTACTTACCACGTTGCCTCCGCACACCTGGCTATTGACTCCAC
GGCTGACCCTGAAGCCATCCTGGCTGAAGCCTCATCCCGGCTCTATTCCCGGTTTGGATTCTCT
AGCTGCACCCTGCAGGTGGAGAAATACCGGTCTGAGATGGCCCACTGTCTTCGCTGCCGGGAGC
CCCCCAAAGCCTGAGCCTCAGCCCCACCCTCGCCCCACTGCCAGGACTAGGCTTGTGCCTGGAC
CCTCAGCACCTGCCTCCCAGATCACAGAAGAGACCTTTCTCTCTCCATCTTCCACCTGCCAAAT
GCCCTCACCCCTGCCCCGGTGGTCAAGACCAAAGTGTATATGAAGGCAGTGGGGGGAGGGGAGG
ATCGGATTGAATAGCTGTAAGCGATTCAGGGGTGTGGGGCGTGTGGAAGCCCCCTGCCATCCGT
GCTCCACATGGAGAGAGTCATGCTTGTCCTCTACGATTCCTGTGTCCCTGTGGCAGGCTGGCTG
GCTAGCTGGGGACATCTGCCTGTCTGTGTGCTGTTCGTGTGCCTATGCCTGGGGAGGTCAGCAG
GGGCCCCCTCCCCACGTGATCCTTGCTCTTGTCTATGCAGGGGCCCCAAAGCCTGCACTTTGTT
TGTGTGCCCTAGTCTTGTGGTTTTGTGTGTTGTATATTTGCGTCCTTTGGTGCTGTGGCCTGTG
TGTCCCTGTGCCTGTGTGGCTGTGCTGGTCGTTGTGAGTCTGCTCCACTTGTGTGTCCATATGG
GATCTGTCTGTCCATCCCTGTGTTGGTGCTGTGTCCTCAGCTTTTCCCAAGGGAGAGGGGGGAC
TCCACTGCAGCTCCACCAATAAACTTGGATCTCACTGTA

hide sequence

RefSeq Acc Id:

XM_008764527 ⟹ XP_008762749

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	25,275,727 - 25,284,720 (+)	NCBI
Rnor_6.0	6	26,641,091 - 26,650,106 (+)	NCBI

Sequence:

show sequence

TTGCCTGGTGGCTGGCTCTCCTCAGTATGTCCTCCTGAGACGCAAGCCGAGAGCTGAGGCCCTC
GAGACCGTTGGGAAGTTGGAAGGAGAGAGCCCCCTTTGGTCCAGACGCCGGCACAGAGGGAAGG
CGGACAGTGGCCCCGGGCGCGCGTGGGCGTAGGCCCGCGTCCAGGACATGCAGACAGGGTTTTC
TGCTCTGTTTCCCGCTCACTACCATCCCTTTGCGCACGCCGCCCCTCTGCAATCATGGCGCGAA
CTTAGCCGCACTCTCCCCCGCCGGAACAACAGCCTGCCCGCTGCCCGTGGCGGCAGGTGCGAAG
AGTAGAGAGCACTGAGCATTTGAAGTTTCCGTCAGACCCCAGCCTTAACCACCGACGGCTTCTT
TTCACAGAGCCCTCAGAGCCCCTGCCGGAGGGGCCCAAGCTTGAGGGGATGGCCTTCCACCACT
GCCACAAGAACCGCGTGTCTCAGTCAGGCCTCTCTCCAGAGAGGGCGCAGGCCCGGAGGCAGCT
GTATGCTGCCTGCGTCGTGTGCTTCATCTTCATGGCTGGGGAGGTGGTTGGTGGGTATTTAGCA
CACAGCTTGGCCATCATGACCGACGCCGCCCACTTGCTGGCAGACATAGGCAGTATGATGGCCA
GCCTCTTTTCCCTCTGGCTCTCTACTCGGCCAGCCACCCGCACCATGACCTTTGGCTGGCACCG
CTCAGAGACTCTGGGAGCTTTGGCCTCCGTGGTCTCCCTCTGGATAGTCACCGGCATCCTCCTG
TACCTGGCCTTCCTCCGCCTGCTTCACAGTGACTACCACATTGAGGCGGGCGCCATGCTGCTGA
CTGCCAGCATTGCTGTCTGTGCCAACATGATAATGGCCTTTGTGCTGCACCAGACTGGAGCCCC
CCACAGCCACGGACCTAGGGGTGCAGAGTATGCACCACTGGAGGAGGGGCACGGGCACCCACTG
TCCCTGGGAAACACCAGTGTCCGGGCTGCCTTTGTGCATGTGCTGGGAGATCTCCTTCAGAGCC
TCGGGGTCCTGGCCGCCTCTATCCTCATCTACTTCAAGCCCCAGTACAAGGTGGCCGACCCCAT
CAGCACCTTCCTCTTCTCTATCTGCGCCCTTGGGTCCACAGCTCCTACACTTCGAGATGTTCTC
CTCGTCCTCATGGAAGGTGCCCCTCGGAGTGTGGAATTTGAGCCTGTAAGGGACACCTTGTTGT
CAGTGCCGGGTGTCCGAGCCACCCATGATCTCCACCTGTGGGCGCTGACGCTTACTTACCACGT
TGCCTCCGCACACCTGGCTATTGACTCCACGGCTGACCCTGAAGCCATCCTGGCTGAAGCCTCA
TCCCGGCTCTATTCCCGGTTTGGATTCTCTAGCTGCACCCTGCAGGTGGAGAAATACCGGTCTG
AGATGGCCCACTGTCTTCGCTGCCGGGAGCCCCCCAAAGCCTGAGCCTCAGCCCCACCCTCGCC
CCACTGCCAGGACTAGGCTTGTGCCTGGACCCTCAGCACCTGCCTCCCAGATCACAGAAGAGAC
CTTTCTCTCTCCATCTTCCACCTGCCAAATGCCCTCACCCCTGCCCCGGTGGTCAAGACCAAAG
TGTATATGAAGGCAGTGGGGGGAGGGGAGGATCGGATTGAATAGCTGTAAGCGATTCAGGGGTG
TGGGGCGTGTGGAAGCCCCCTGCCATCCGTGCTCCACATGGAGAGAGTCATGCTTGTCCTCTAC
GATTCCTGTGTCCCTGTGGCAGGCTGGCTGGCTAGCTGGGGACATCTGCCTGTCTGTGTGCTGT
TCGTGTGCCTATGCCTGGGGAGGTCAGCAGGGGCCCCCTCCCCACGTGATCCTTGCTCTTGTCT
ATGCAGGGGCCCCAAAGCCTGCACTTTGTTTGTGTGCCCTAGTCTTGTGGTTTTGTGTGTTGTA
TATTTGCGTCCTTTGGTGCTGTGGCCTGTGTGTCCCTGTGCCTGTGTGGCTGTGCTGGTCGTTG
TGAGTCTGCTCCACTTGTGTGTCCATATGGGATCTGTCTGTCCATCCCTGTGTTGGTGCTGTGT
CCTCAGCTTTTCCCAAGGGAGAGGGGGGACTCCACTGCAGCTCCACCAATAAACTTGGATCTCA
CTGTA

hide sequence

RefSeq Acc Id:

XM_008764528 ⟹ XP_008762750

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	25,276,044 - 25,284,720 (+)	NCBI
Rnor_6.0	6	26,641,400 - 26,650,106 (+)	NCBI

Sequence:

show sequence

CTAATCCGTTTTAAGCCTCACCTCCTCCGCGAAGCTCTCCCGCCTTAACCCCATCACTTCCAGA
CACGGTGTGGCTTTCTCGCGGTGTCTTTGACTTTATCGTTTTTTGTTTGGTTTGGTTTGCCTTT
TGGAAATGCACACACGATCCCCTTGTTTGGAACAGAAGTGCTGAGGGCAGTGGCGGCAGGTGCG
AAGAGTAGAGAGCACTGAGCATTTGAAGTTTCCGTCAGACCCCAGCCTTAACCACCGACGGCTT
CTTTTCACAGAGCCCTCAGAGCCCCTGCCGGAGGGGCCCAAGCTTGAGGGGATGGCCTTCCACC
ACTGCCACAAGAACCGCGTGTCTCAGTCAGGCCTCTCTCCAGAGAGGGCGCAGGCCCGGAGGCA
GCTGTATGCTGCCTGCGTCGTGTGCTTCATCTTCATGGCTGGGGAGGTGGTTGGTGGGTATTTA
GCACACAGCTTGGCCATCATGACCGACGCCGCCCACTTGCTGGCAGACATAGGCAGTATGATGG
CCAGCCTCTTTTCCCTCTGGCTCTCTACTCGGCCAGCCACCCGCACCATGACCTTTGGCTGGCA
CCGCTCAGAGACTCTGGGAGCTTTGGCCTCCGTGGTCTCCCTCTGGATAGTCACCGGCATCCTC
CTGTACCTGGCCTTCCTCCGCCTGCTTCACAGTGACTACCACATTGAGGCGGGCGCCATGCTGC
TGACTGCCAGCATTGCTGTCTGTGCCAACATGATAATGGCCTTTGTGCTGCACCAGACTGGAGC
CCCCCACAGCCACGGACCTAGGGGTGCAGAGTATGCACCACTGGAGGAGGGGCACGGGCACCCA
CTGTCCCTGGGAAACACCAGTGTCCGGGCTGCCTTTGTGCATGTGCTGGGAGATCTCCTTCAGA
GCCTCGGGGTCCTGGCCGCCTCTATCCTCATCTACTTCAAGCCCCAGTACAAGGTGGCCGACCC
CATCAGCACCTTCCTCTTCTCTATCTGCGCCCTTGGGTCCACAGCTCCTACACTTCGAGATGTT
CTCCTCGTCCTCATGGAAGGTGCCCCTCGGAGTGTGGAATTTGAGCCTGTAAGGGACACCTTGT
TGTCAGTGCCGGGTGTCCGAGCCACCCATGATCTCCACCTGTGGGCGCTGACGCTTACTTACCA
CGTTGCCTCCGCACACCTGGCTATTGACTCCACGGCTGACCCTGAAGCCATCCTGGCTGAAGCC
TCATCCCGGCTCTATTCCCGGTTTGGATTCTCTAGCTGCACCCTGCAGGTGGAGAAATACCGGT
CTGAGATGGCCCACTGTCTTCGCTGCCGGGAGCCCCCCAAAGCCTGAGCCTCAGCCCCACCCTC
GCCCCACTGCCAGGACTAGGCTTGTGCCTGGACCCTCAGCACCTGCCTCCCAGATCACAGAAGA
GACCTTTCTCTCTCCATCTTCCACCTGCCAAATGCCCTCACCCCTGCCCCGGTGGTCAAGACCA
AAGTGTATATGAAGGCAGTGGGGGGAGGGGAGGATCGGATTGAATAGCTGTAAGCGATTCAGGG
GTGTGGGGCGTGTGGAAGCCCCCTGCCATCCGTGCTCCACATGGAGAGAGTCATGCTTGTCCTC
TACGATTCCTGTGTCCCTGTGGCAGGCTGGCTGGCTAGCTGGGGACATCTGCCTGTCTGTGTGC
TGTTCGTGTGCCTATGCCTGGGGAGGTCAGCAGGGGCCCCCTCCCCACGTGATCCTTGCTCTTG
TCTATGCAGGGGCCCCAAAGCCTGCACTTTGTTTGTGTGCCCTAGTCTTGTGGTTTTGTGTGTT
GTATATTTGCGTCCTTTGGTGCTGTGGCCTGTGTGTCCCTGTGCCTGTGTGGCTGTGCTGGTCG
TTGTGAGTCTGCTCCACTTGTGTGTCCATATGGGATCTGTCTGTCCATCCCTGTGTTGGTGCTG
TGTCCTCAGCTTTTCCCAAGGGAGAGGGGGGACTCCACTGCAGCTCCACCAATAAACTTGGATC
TCACTGTA

hide sequence

RefSeq Acc Id:

XM_017594247 ⟹ XP_017449736

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	25,275,545 - 25,284,720 (+)	NCBI
Rnor_6.0	6	26,640,878 - 26,650,106 (+)	NCBI

Sequence:

show sequence

ATTGGGGCGGGGGGGGGGGAGCTAGCACACTGATCTCTGAAGTGCGGAATGGCTCTTTGGCCAC
TTAAGCACCAGCGCCATTGGAATCCGGGGAACTCCAGGGCAAGCAGTAAATTTAGAAAACCGAC
GGTGCTGGGCAAGATGAGCTCGCTGGTTTAGCTGGACAGACACATGATTTCCACCTTTGCTCTG
ACATGGGCCGACAAGTGGCGGCAGGTGCGAAGAGTAGAGAGCACTGAGCATTTGAAGTTTCCGT
CAGACCCCAGCCTTAACCACCGACGGCTTCTTTTCACAGAGCCCTCAGAGCCCCTGCCGGAGGG
GCCCAAGCTTGAGGGGATGGCCTTCCACCACTGCCACAAGAACCGCGTGTCTCAGTCAGGCCTC
TCTCCAGAGAGGGCGCAGGCCCGGAGGCAGCTGTATGCTGCCTGCGTCGTGTGCTTCATCTTCA
TGGCTGGGGAGGTGGTTGGTGGGTATTTAGCACACAGCTTGGCCATCATGACCGACGCCGCCCA
CTTGCTGGCAGACATAGGCAGTATGATGGCCAGCCTCTTTTCCCTCTGGCTCTCTACTCGGCCA
GCCACCCGCACCATGACCTTTGGCTGGCACCGCTCAGAGACTCTGGGAGCTTTGGCCTCCGTGG
TCTCCCTCTGGATAGTCACCGGCATCCTCCTGTACCTGGCCTTCCTCCGCCTGCTTCACAGTGA
CTACCACATTGAGGCGGGCGCCATGCTGCTGACTGCCAGCATTGCTGTCTGTGCCAACATGATA
ATGGCCTTTGTGCTGCACCAGACTGGAGCCCCCCACAGCCACGGACCTAGGGGTGCAGAGTATG
CACCACTGGAGGAGGGGCACGGGCACCCACTGTCCCTGGGAAACACCAGTGTCCGGGCTGCCTT
TGTGCATGTGCTGGGAGATCTCCTTCAGAGCCTCGGGGTCCTGGCCGCCTCTATCCTCATCTAC
TTCAAGCCCCAGTACAAGGTGGCCGACCCCATCAGCACCTTCCTCTTCTCTATCTGCGCCCTTG
GGTCCACAGCTCCTACACTTCGAGATGTTCTCCTCGTCCTCATGGAAGGTGCCCCTCGGAGTGT
GGAATTTGAGCCTGTAAGGGACACCTTGTTGTCAGTGCCGGGTGTCCGAGCCACCCATGATCTC
CACCTGTGGGCGCTGACGCTTACTTACCACGTTGCCTCCGCACACCTGGCTATTGACTCCACGG
CTGACCCTGAAGCCATCCTGGCTGAAGCCTCATCCCGGCTCTATTCCCGGTTTGGATTCTCTAG
CTGCACCCTGCAGGTGGAGAAATACCGGTCTGAGATGGCCCACTGTCTTCGCTGCCGGGAGCCC
CCCAAAGCCTGAGCCTCAGCCCCACCCTCGCCCCACTGCCAGGACTAGGCTTGTGCCTGGACCC
TCAGCACCTGCCTCCCAGATCACAGAAGAGACCTTTCTCTCTCCATCTTCCACCTGCCAAATGC
CCTCACCCCTGCCCCGGTGGTCAAGACCAAAGTGTATATGAAGGCAGTGGGGGGAGGGGAGGAT
CGGATTGAATAGCTGTAAGCGATTCAGGGGTGTGGGGCGTGTGGAAGCCCCCTGCCATCCGTGC
TCCACATGGAGAGAGTCATGCTTGTCCTCTACGATTCCTGTGTCCCTGTGGCAGGCTGGCTGGC
TAGCTGGGGACATCTGCCTGTCTGTGTGCTGTTCGTGTGCCTATGCCTGGGGAGGTCAGCAGGG
GCCCCCTCCCCACGTGATCCTTGCTCTTGTCTATGCAGGGGCCCCAAAGCCTGCACTTTGTTTG
TGTGCCCTAGTCTTGTGGTTTTGTGTGTTGTATATTTGCGTCCTTTGGTGCTGTGGCCTGTGTG
TCCCTGTGCCTGTGTGGCTGTGCTGGTCGTTGTGAGTCTGCTCCACTTGTGTGTCCATATGGGA
TCTGTCTGTCCATCCCTGTGTTGGTGCTGTGTCCTCAGCTTTTCCCAAGGGAGAGGGGGGACTC
CACTGCAGCTCCACCAATAAACTTGGATCTCACTGTA

hide sequence

RefSeq Acc Id:

XM_039112621 ⟹ XP_038968549

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	25,264,310 - 25,284,720 (+)	NCBI

RefSeq Acc Id:

XM_039112622 ⟹ XP_038968550

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	25,275,726 - 25,284,720 (+)	NCBI

RefSeq Acc Id:

XM_039112623 ⟹ XP_038968551

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	25,276,043 - 25,284,720 (+)	NCBI

RefSeq Acc Id:

XM_039112624 ⟹ XP_038968552

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	25,276,082 - 25,284,720 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013261	(Get FASTA)	NCBI Sequence Viewer
	XP_008762748	(Get FASTA)	NCBI Sequence Viewer
	XP_008762749	(Get FASTA)	NCBI Sequence Viewer
	XP_008762750	(Get FASTA)	NCBI Sequence Viewer
	XP_017449736	(Get FASTA)	NCBI Sequence Viewer
	XP_038968549	(Get FASTA)	NCBI Sequence Viewer
	XP_038968550	(Get FASTA)	NCBI Sequence Viewer
	XP_038968551	(Get FASTA)	NCBI Sequence Viewer
	XP_038968552	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86513	(Get FASTA)	NCBI Sequence Viewer
	AAS46250	(Get FASTA)	NCBI Sequence Viewer
	CAD30327	(Get FASTA)	NCBI Sequence Viewer
	EDM02934	(Get FASTA)	NCBI Sequence Viewer
	Q6QIX3	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001013261 ⟸ NM_001013243

- UniProtKB:

Q5RJT1 (UniProtKB/Swiss-Prot), Q6QIX3 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEPSPASGGSETTRLVSPRDRSSAGGGLRLKSLFTEPSEPLPEGPKLEGMAFHHCHKNRVSQSG
LSPERAQARRQLYAACVVCFIFMAGEVVGGYLAHSLAIMTDAAHLLADIGSMMASLFSLWLSTR
PATRTMTFGWHRSETLGALASVVSLWIVTGILLYLAFLRLLHSDYHIEAGAMLLTASIAVCANM
IMAFVLHQTGAPHSHGPRGAEYAPLEEGHGHPLSLGNTSVRAAFVHVLGDLLQSLGVLAASILI
YFKPQYKVADPISTFLFSICALGSTAPTLRDVLLVLMEGAPRSVEFEPVRDTLLSVPGVRATHD
LHLWALTLTYHVASAHLAIDSTADPEAILAEASSRLYSRFGFSSCTLQVEKYRSEMAHCLRCRE
PPKA

hide sequence

RefSeq Acc Id:	XP_008762748 ⟸ XM_008764526
- Peptide Label:	isoform X2
- UniProtKB:	Q6QIX3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAFHHCHKNRVSQSGLSPERAQARRQLYAACVVCFIFMAGEVVGGYLAHSLAIMTDAAHLLADI GSMMASLFSLWLSTRPATRTMTFGWHRSETLGALASVVSLWIVTGILLYLAFLRLLHSDYHIEA GAMLLTASIAVCANMIMAFVLHQTGAPHSHGPRGAEYAPLEEGHGHPLSLGNTSVRAAFVHVLG DLLQSLGVLAASILIYFKPQYKVADPISTFLFSICALGSTAPTLRDVLLVLMEGAPRSVEFEPV RDTLLSVPGVRATHDLHLWALTLTYHVASAHLAIDSTADPEAILAEASSRLYSRFGFSSCTLQV EKYRSEMAHCLRCREPPKA hide sequence

RefSeq Acc Id:	XP_008762749 ⟸ XM_008764527
- Peptide Label:	isoform X2
- UniProtKB:	Q6QIX3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAFHHCHKNRVSQSGLSPERAQARRQLYAACVVCFIFMAGEVVGGYLAHSLAIMTDAAHLLADI GSMMASLFSLWLSTRPATRTMTFGWHRSETLGALASVVSLWIVTGILLYLAFLRLLHSDYHIEA GAMLLTASIAVCANMIMAFVLHQTGAPHSHGPRGAEYAPLEEGHGHPLSLGNTSVRAAFVHVLG DLLQSLGVLAASILIYFKPQYKVADPISTFLFSICALGSTAPTLRDVLLVLMEGAPRSVEFEPV RDTLLSVPGVRATHDLHLWALTLTYHVASAHLAIDSTADPEAILAEASSRLYSRFGFSSCTLQV EKYRSEMAHCLRCREPPKA hide sequence

RefSeq Acc Id:	XP_008762750 ⟸ XM_008764528
- Peptide Label:	isoform X2
- UniProtKB:	Q6QIX3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAFHHCHKNRVSQSGLSPERAQARRQLYAACVVCFIFMAGEVVGGYLAHSLAIMTDAAHLLADI GSMMASLFSLWLSTRPATRTMTFGWHRSETLGALASVVSLWIVTGILLYLAFLRLLHSDYHIEA GAMLLTASIAVCANMIMAFVLHQTGAPHSHGPRGAEYAPLEEGHGHPLSLGNTSVRAAFVHVLG DLLQSLGVLAASILIYFKPQYKVADPISTFLFSICALGSTAPTLRDVLLVLMEGAPRSVEFEPV RDTLLSVPGVRATHDLHLWALTLTYHVASAHLAIDSTADPEAILAEASSRLYSRFGFSSCTLQV EKYRSEMAHCLRCREPPKA hide sequence

RefSeq Acc Id:	XP_017449736 ⟸ XM_017594247
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AD52 (UniProtKB/TrEMBL)
- Sequence:	show sequence MISTFALTWADKWRQVRRVESTEHLKFPSDPSLNHRRLLFTEPSEPLPEGPKLEGMAFHHCHKN RVSQSGLSPERAQARRQLYAACVVCFIFMAGEVVGGYLAHSLAIMTDAAHLLADIGSMMASLFS LWLSTRPATRTMTFGWHRSETLGALASVVSLWIVTGILLYLAFLRLLHSDYHIEAGAMLLTASI AVCANMIMAFVLHQTGAPHSHGPRGAEYAPLEEGHGHPLSLGNTSVRAAFVHVLGDLLQSLGVL AASILIYFKPQYKVADPISTFLFSICALGSTAPTLRDVLLVLMEGAPRSVEFEPVRDTLLSVPG VRATHDLHLWALTLTYHVASAHLAIDSTADPEAILAEASSRLYSRFGFSSCTLQVEKYRSEMAH CLRCREPPKA hide sequence

RefSeq Acc Id:

ENSRNOP00000008126 ⟸ ENSRNOT00000008126

RefSeq Acc Id:	XP_038968549 ⟸ XM_039112621
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038968550 ⟸ XM_039112622
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038968551 ⟸ XM_039112623
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038968552 ⟸ XM_039112624
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSRNOP00000090098 ⟸ ENSRNOT00000102704

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6QIX3-F1-model_v2	AlphaFold	Q6QIX3	1-388	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694449

Promoter ID:

EPDNEW_R4972

Type:

multiple initiation site

Name:

Slc30a3_1

Description:

solute carrier family 30 member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	26,642,756 - 26,642,816	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359689	AgrOrtholog
BioCyc Gene	G2FUF-38343	BioCyc
Ensembl Genes	ENSRNOG00000006204	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000008126	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000090098	ENTREZGENE
	ENSRNOP00000090098.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008126	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000102704	ENTREZGENE
	ENSRNOT00000102704.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1510.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134069	IMAGE-MGC_LOAD
InterPro	Cation_efflux	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cation_efflux_CTD_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cation_efflux_TMD_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:366568	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105899	IMAGE-MGC_LOAD
NCBI Gene	366568	ENTREZGENE
Pfam	Cation_efflux	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc30a3	PhenoGen
Superfamily-SCOP	SSF160240	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF161111	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs	CDF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6AD52	ENTREZGENE, UniProtKB/TrEMBL
	Q5RJT1	ENTREZGENE
	Q6QIX3	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q5RJT1	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc30a3	solute carrier family 30 member 3	Slc30a3	solute carrier family 30 (zinc transporter), member 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Slc30a3	solute carrier family 30 (zinc transporter), member 3	ZnT3	zinc transporter ZnT-3	Symbol and Name updated	1299863	APPROVED
2005-07-29	ZnT3	zinc transporter ZnT-3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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