Gene: LOC120093289 (U6 spliceosomal RNA) Rattus norvegicus |
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Analyze |
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Symbol: |
LOC120093289 |
Name: |
U6 spliceosomal RNA |
RGD ID: |
41010483 |
Description: |
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Type: |
snrna
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RefSeq Status: |
MODEL |
Previously known as: |
U6 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 6 | 33,574,281 - 33,574,387 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 6 | 27,854,836 - 27,854,942 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 6 | 27,854,836 - 27,854,942 (+) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 6 | 29,971,526 - 29,971,632 (-) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 6 | q14 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
LOC120093289 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 6 | 33,574,281 - 33,574,387 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 6 | 27,854,836 - 27,854,942 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 6 | 27,854,836 - 27,854,942 (+) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 6 | 29,971,526 - 29,971,632 (-) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 6 | q14 | NCBI | | | | |
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RNU6-451P (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 2 | 230,587,122 - 230,587,221 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 2 | 230,587,121 - 230,587,227 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 2 | 231,451,837 - 231,451,936 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 2 | q37.1 | NCBI | | | | | CHM1_1 | 2 | 231,457,639 - 231,457,738 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 2 | 231,070,184 - 231,070,283 (+) | NCBI | | T2T-CHM13v2.0 | | |
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LOC119872399 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Dog10K_Boxer_Tasha | 6 | 11,218,904 - 11,219,007 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 6 | 9,517,562 - 9,517,665 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 6 | 9,517,562 - 9,517,665 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 6 | 9,366,331 - 9,366,434 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 6 | 9,346,717 - 9,346,820 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 6 | 9,526,317 - 9,526,420 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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QTLs in Region (mRatBN7.2)
1331743 | Uae28 | Urinary albumin excretion QTL 28 | 4.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 6 | 1 | 34235784 | Rat | 1578758 | Tcas9 | Tongue tumor susceptibility QTL 9 | 3.29 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 6 | 1 | 37618905 | Rat | 1598843 | Cm63 | Cardiac mass QTL 63 | 2.6 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 6 | 1 | 39036266 | Rat | 7411603 | Foco13 | Food consumption QTL 13 | 5.5 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 6 | 1 | 41223769 | Rat | 8552962 | Pigfal16 | Plasma insulin-like growth factor 1 level QTL 16 | 9.4 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 6 | 1 | 41223769 | Rat | 7411542 | Bw127 | Body weight QTL 127 | 5.5 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 6 | 1 | 41223769 | Rat | 9589129 | Insul24 | Insulin level QTL 24 | 19.06 | 0.001 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 6 | 1 | 41223769 | Rat | 9589048 | Scfw3 | Subcutaneous fat weight QTL 3 | 4.57 | 0.001 | subcutaneous adipose mass (VT:1000472) | abdominal subcutaneous fat pad weight (CMO:0002069) | 6 | 1 | 41223769 | Rat | 2293709 | Bss23 | Bone structure and strength QTL 23 | 5.18 | 0.0001 | femur morphology trait (VT:0000559) | femur cross-sectional area (CMO:0001661) | 6 | 1 | 42487980 | Rat | 2293650 | Bss31 | Bone structure and strength QTL 31 | 5.05 | 0.0001 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 6 | 1 | 42487980 | Rat | 2293656 | Bss28 | Bone structure and strength QTL 28 | 6.79 | 0.0001 | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 6 | 1 | 42487980 | Rat | 7411584 | Foco4 | Food consumption QTL 4 | 4.3 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 6 | 1 | 42838846 | Rat | 738024 | Sach5 | Saccharine consumption QTL 5 | 3.9 | 0.00039 | consumption behavior trait (VT:0002069) | saccharin intake volume to total fluid intake volume ratio (CMO:0001601) | 6 | 1 | 43394190 | Rat | 2301972 | Bp325 | Blood pressure QTL 325 | 4.8 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 6 | 1 | 72227641 | Rat | 1300128 | Rf16 | Renal function QTL 16 | 3.89 | | renal blood flow trait (VT:2000006) | absolute change in renal blood flow rate (CMO:0001168) | 6 | 5074497 | 34434305 | Rat | 1300164 | Rf15 | Renal function QTL 15 | 3.12 | | renal blood flow trait (VT:2000006) | absolute change in renal blood flow rate (CMO:0001168) | 6 | 5074497 | 54641141 | Rat | 4145119 | Mcs25 | Mammary carcinoma susceptibility QTL 25 | | 0.0001 | mammary gland integrity trait (VT:0010552) | ratio of deaths to total study population during a period of time (CMO:0001023) | 6 | 10894415 | 110548006 | Rat | 1578665 | Bss16 | Bone structure and strength QTL 16 | 4.4 | | femur morphology trait (VT:0000559) | bone trabecular cross-sectional area (CMO:0002311) | 6 | 11735669 | 72593685 | Rat | 1578668 | Bmd14 | Bone mineral density QTL 14 | 3.8 | | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 6 | 11735669 | 72593685 | Rat | 10401812 | Kidm54 | Kidney mass QTL 54 | | | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 6 | 14368788 | 59368788 | Rat | 10401800 | Kidm49 | Kidney mass QTL 49 | | | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 6 | 14368788 | 59368788 | Rat | 1576309 | Emca7 | Estrogen-induced mammary cancer QTL 7 | 4 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 6 | 15107216 | 107351382 | Rat | 2292589 | Emca10 | Estrogen-induced mammary cancer QTL 10 | | 0.048 | mammary gland integrity trait (VT:0010552) | post-insult time to mammary tumor formation (CMO:0000345) | 6 | 16536140 | 61536140 | Rat | 1354664 | Slep2 | Serum leptin concentration QTL 2 | 4.49 | | blood leptin amount (VT:0005667) | serum leptin level (CMO:0000780) | 6 | 16536140 | 71636405 | Rat | 1641898 | Colcr4 | Colorectal carcinoma resistance QTL4 | 3.71 | 0.0007 | intestine integrity trait (VT:0010554) | well differentiated malignant colorectal tumor surface area measurement (CMO:0002077) | 6 | 20338777 | 62613667 | Rat | 2293839 | Kiddil2 | Kidney dilation QTL 2 | 4.8 | | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 6 | 20866422 | 81133036 | Rat | 2293841 | Kiddil4 | Kidney dilation QTL 4 | 4.4 | | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 6 | 20866422 | 81133036 | Rat | |
Expression
Sequence
RefSeq Acc Id: |
ENSRNOT00000084623 |
Type: |
CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 Ensembl | 6 | 27,854,836 - 27,854,942 (+) | Ensembl |
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RefSeq Acc Id: |
XR_005486397 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 6 | 33,574,281 - 33,574,387 (+) | NCBI | mRatBN7.2 | 6 | 27,854,836 - 27,854,942 (+) | NCBI |
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Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2022-06-02 |
LOC120093289 |
U6 spliceosomal RNA |
U6 |
U6 spliceosomal RNA |
Data merged from RGD:15011704 |
737654 |
PROVISIONAL |
2021-01-26 |
LOC120093289 |
U6 spliceosomal RNA |
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Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
2019-11-08 |
U6 |
U6 spliceosomal RNA |
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Symbol and Name status set to provisional |
45752 |
PROVISIONAL |
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