Atraid (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 6 | 31,035,194 - 31,039,779 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 6 | 25,315,236 - 25,319,821 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | UTH_Rnor_SHR_Utx | 6 | 25,615,952 - 25,620,625 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 6 | 25,931,821 - 25,936,493 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 6 | 25,410,819 - 25,415,405 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 6 | 26,680,628 - 26,685,185 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 6 | 26,680,598 - 26,685,235 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 6 | 36,495,619 - 36,500,176 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 6 | 25,296,435 - 25,300,992 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 6 | 25,299,388 - 25,303,931 (-) | NCBI | | | | | Celera | 6 | 24,806,112 - 24,810,669 (-) | NCBI | | Celera | | | Cytogenetic Map | 6 | q14 | NCBI | | | | |
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ATRAID (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 2 | 27,212,041 - 27,217,183 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 2 | 27,212,041 - 27,217,178 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 2 | 27,434,909 - 27,440,051 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 2 | 27,288,403 - 27,293,557 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 2 | 27,281,225 - 27,286,373 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | p23.3 | NCBI | | | | | HuRef | 2 | 27,176,604 - 27,181,752 (+) | NCBI | | HuRef | | | CHM1_1 | 2 | 27,364,803 - 27,369,951 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 2 | 27,253,676 - 27,258,822 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Atraid (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 5 | 31,205,984 - 31,211,977 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 5 | 31,205,656 - 31,211,967 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 5 | 31,048,640 - 31,054,633 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 5 | 31,048,312 - 31,054,623 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 5 | 31,351,013 - 31,356,996 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 5 | 31,325,240 - 31,331,205 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 5 | 28,520,671 - 28,526,646 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | B1 | NCBI | | | | | cM Map | 5 | 16.94 | NCBI | | | | |
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Atraid (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 | NW_004955469 | 9,194,656 - 9,203,292 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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ATRAID (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 12 | 99,295,952 - 99,301,260 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 2A | 99,299,919 - 99,305,096 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 2A | 27,213,556 - 27,218,552 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 2A | 27,301,175 - 27,306,294 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 2A | 27,301,175 - 27,306,294 (+) | Ensembl | panpan1.1 | | panPan2 | |
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ATRAID (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 17 | 21,193,685 - 21,198,897 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 17 | 21,193,909 - 21,198,718 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 17 | 21,085,430 - 21,090,701 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 17 | 21,514,595 - 21,519,873 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 17 | 21,514,879 - 21,541,837 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 17 | 21,201,349 - 21,206,629 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 17 | 21,212,426 - 21,217,698 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 17 | 21,259,309 - 21,264,580 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Atraid (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024406292 | 65,501,434 - 65,506,414 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936493 | 5,333,169 - 5,338,116 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936493 | 5,333,151 - 5,338,157 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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ATRAID (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 3 | 111,914,708 - 111,919,946 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 3 | 111,914,710 - 111,919,766 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 3 | 118,912,964 - 118,918,196 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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ATRAID (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 14 | 80,399,298 - 80,404,539 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 14 | 80,399,513 - 80,404,280 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666045 | 31,750,835 - 31,755,984 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Atraid (Heterocephalus glaber - naked mole-rat) |
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