Mta3 (metastasis associated 1 family, member 3) - Rat Genome Database

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Gene: Mta3 (metastasis associated 1 family, member 3) Rattus norvegicus
Analyze
Symbol: Mta3
Name: metastasis associated 1 family, member 3
RGD ID: 1306803
Description: Predicted to enable several functions, including NuRD complex binding activity; histone deacetylase binding activity; and transcription coactivator activity. Predicted to be involved in chromatin remodeling; histone deacetylation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of G2/M transition of mitotic cell cycle and positive regulation of granulosa cell proliferation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Orthologous to human MTA3 (metastasis associated 1 family member 3); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; INTERACTS WITH 2,6-dinitrotoluene; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100362346; LOC298763; metastasis associated 3; metastasis-associated protein MTA3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2610,867,028 - 10,987,221 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl610,867,011 - 10,986,883 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx611,170,306 - 11,281,199 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0611,479,638 - 11,590,535 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0610,992,528 - 11,103,617 (-)NCBIRnor_WKY
Rnor_6.066,904,449 - 7,036,929 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl66,908,684 - 7,031,828 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.066,858,988 - 6,986,437 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.467,060,212 - 7,180,405 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.167,060,211 - 7,158,087 (+)NCBI
Celera610,573,980 - 10,694,134 (-)NCBICelera
Cytogenetic Map6q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Dwarfism  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The nucleosome remodeling and deacetylase complex in development and disease. Basta J and Rauchman M, Transl Res. 2014 May 10. pii: S1931-5244(14)00166-2. doi: 10.1016/j.trsl.2014.05.003.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:11483358   PMID:15454082   PMID:15632090   PMID:20720167   PMID:22075476   PMID:22770845   PMID:22926524   PMID:30816482  


Genomics

Comparative Map Data
Mta3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2610,867,028 - 10,987,221 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl610,867,011 - 10,986,883 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx611,170,306 - 11,281,199 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0611,479,638 - 11,590,535 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0610,992,528 - 11,103,617 (-)NCBIRnor_WKY
Rnor_6.066,904,449 - 7,036,929 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl66,908,684 - 7,031,828 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.066,858,988 - 6,986,437 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.467,060,212 - 7,180,405 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.167,060,211 - 7,158,087 (+)NCBI
Celera610,573,980 - 10,694,134 (-)NCBICelera
Cytogenetic Map6q12NCBI
MTA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38242,494,110 - 42,756,946 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl242,494,569 - 42,756,947 (+)EnsemblGRCh38hg38GRCh38
GRCh37242,721,250 - 42,984,086 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36242,649,175 - 42,789,857 (+)NCBINCBI36Build 36hg18NCBI36
Build 34242,707,321 - 42,848,003NCBI
Celera242,636,184 - 42,775,597 (+)NCBICelera
Cytogenetic Map2p21NCBI
HuRef242,530,841 - 42,670,522 (+)NCBIHuRef
CHM1_1242,725,097 - 42,865,672 (+)NCBICHM1_1
T2T-CHM13v2.0242,499,549 - 42,762,201 (+)NCBIT2T-CHM13v2.0
Mta3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391784,013,483 - 84,131,144 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1784,013,592 - 84,128,945 (+)EnsemblGRCm39 Ensembl
GRCm381783,706,163 - 83,823,715 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1783,706,163 - 83,821,516 (+)EnsemblGRCm38mm10GRCm38
MGSCv371784,105,503 - 84,214,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361783,614,535 - 83,723,228 (+)NCBIMGSCv36mm8
Celera1788,058,623 - 88,169,758 (+)NCBICelera
Cytogenetic Map17E4NCBI
Mta3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554419,965,500 - 10,108,467 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554419,965,727 - 10,108,467 (+)NCBIChiLan1.0ChiLan1.0
MTA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A43,444,119 - 43,694,314 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A43,513,514 - 43,694,314 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A42,593,721 - 42,847,045 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MTA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,288,796 - 34,301,636 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1733,899,194 - 34,072,464 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01734,897,656 - 35,043,556 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11734,022,785 - 34,196,744 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,038,500 - 34,258,846 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,302,876 - 34,476,917 (+)NCBIUU_Cfam_GSD_1.0
Mta3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629237,563,695 - 37,705,245 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365088,989,695 - 9,132,694 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl397,601,412 - 97,782,863 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1397,601,403 - 97,782,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23103,872,735 - 103,917,631 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11464,495,903 - 64,755,500 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1464,500,593 - 64,684,309 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604547,152,448 - 47,411,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mta3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473824,247,752 - 24,403,234 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D6Rat149  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2610,894,415 - 10,894,565 (-)MAPPERmRatBN7.2
Rnor_6.067,009,971 - 7,010,120NCBIRnor6.0
Rnor_5.066,959,479 - 6,959,628UniSTSRnor5.0
RGSC_v3.467,161,389 - 7,161,824RGDRGSC3.4
RGSC_v3.467,161,391 - 7,161,540UniSTSRGSC3.4
RGSC_v3.167,161,391 - 7,161,540RGD
Celera610,601,087 - 10,601,220UniSTS
RH 3.4 Map6535.4RGD
RH 3.4 Map6535.4UniSTS
RH 2.0 Map6754.9RGD
SHRSP x BN Map65.4899RGD
Cytogenetic Map6q12UniSTS
D6Got194  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2610,958,400 - 10,958,664 (-)MAPPERmRatBN7.2
Rnor_6.066,942,997 - 6,943,260NCBIRnor6.0
Rnor_5.066,896,534 - 6,896,797UniSTSRnor5.0
RGSC_v3.467,089,929 - 7,090,193RGDRGSC3.4
RGSC_v3.467,089,930 - 7,090,193UniSTSRGSC3.4
RGSC_v3.467,089,611 - 7,090,193UniSTSRGSC3.4
RGSC_v3.167,089,929 - 7,090,193RGD
Celera610,663,701 - 10,663,964UniSTS
Cytogenetic Map6q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6984331220338915Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:59
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000061921
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 40 24 19 24 74 30 36 11
Low 17 17 17 17 8 11 5 5 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000061921   ⟹   ENSRNOP00000058637
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl610,867,011 - 10,956,571 (-)Ensembl
Rnor_6.0 Ensembl66,946,695 - 7,031,828 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079095   ⟹   ENSRNOP00000068747
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl610,875,472 - 10,986,883 (-)Ensembl
Rnor_6.0 Ensembl66,908,684 - 7,017,561 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096808   ⟹   ENSRNOP00000084094
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl610,867,011 - 10,986,864 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108472   ⟹   ENSRNOP00000084165
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl610,867,011 - 10,986,864 (-)Ensembl
RefSeq Acc Id: XM_039078108   ⟹   XP_038934036
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2610,867,028 - 10,987,221 (-)NCBI
RefSeq Acc Id: XM_039078109   ⟹   XP_038934037
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2610,867,028 - 10,987,220 (-)NCBI
RefSeq Acc Id: XM_039078110   ⟹   XP_038934038
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2610,875,473 - 10,987,217 (-)NCBI
RefSeq Acc Id: XM_039078111   ⟹   XP_038934039
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2610,867,028 - 10,987,218 (-)NCBI
RefSeq Acc Id: XM_039078112   ⟹   XP_038934040
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2610,875,473 - 10,987,216 (-)NCBI
RefSeq Acc Id: XM_039078113   ⟹   XP_038934041
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2610,867,028 - 10,986,462 (-)NCBI
RefSeq Acc Id: XM_039078114   ⟹   XP_038934042
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2610,867,028 - 10,986,125 (-)NCBI
RefSeq Acc Id: XM_039078115   ⟹   XP_038934043
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2610,887,284 - 10,987,215 (-)NCBI
Reference Sequences
RefSeq Acc Id: ENSRNOP00000068747   ⟸   ENSRNOT00000079095
RefSeq Acc Id: ENSRNOP00000058637   ⟸   ENSRNOT00000061921
RefSeq Acc Id: XP_038934036   ⟸   XM_039078108
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038934037   ⟸   XM_039078109
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038934039   ⟸   XM_039078111
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038934041   ⟸   XM_039078113
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038934042   ⟸   XM_039078114
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038934038   ⟸   XM_039078110
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038934040   ⟸   XM_039078112
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038934043   ⟸   XM_039078115
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000084165   ⟸   ENSRNOT00000108472
RefSeq Acc Id: ENSRNOP00000084094   ⟸   ENSRNOT00000096808
Protein Domains
BAH   ELM2   SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JTK6-F1-model_v2 AlphaFold A0A0G2JTK6 1-582 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306803 AgrOrtholog
BioCyc Gene G2FUF-38618 BioCyc
Ensembl Genes ENSRNOG00000004685 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000058637 ENTREZGENE
  ENSRNOP00000058637.5 UniProtKB/TrEMBL
  ENSRNOP00000068747 ENTREZGENE
  ENSRNOP00000068747.2 UniProtKB/TrEMBL
  ENSRNOP00000084094 ENTREZGENE
  ENSRNOP00000084094.1 UniProtKB/TrEMBL
  ENSRNOP00000084165 ENTREZGENE
  ENSRNOP00000084165.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061921 ENTREZGENE
  ENSRNOT00000061921.5 UniProtKB/TrEMBL
  ENSRNOT00000079095 ENTREZGENE
  ENSRNOT00000079095.2 UniProtKB/TrEMBL
  ENSRNOT00000096808 ENTREZGENE
  ENSRNOT00000096808.1 UniProtKB/TrEMBL
  ENSRNOT00000108472 ENTREZGENE
  ENSRNOT00000108472.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.490 UniProtKB/TrEMBL
InterPro BAH_dom UniProtKB/TrEMBL
  BAH_sf UniProtKB/TrEMBL
  ELM2_dom UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  MIER/MTA UniProtKB/TrEMBL
  MTA1_R1 UniProtKB/TrEMBL
  Myb_dom UniProtKB/TrEMBL
  SANT_DNA-bd UniProtKB/TrEMBL
  SANT_eukarya UniProtKB/TrEMBL
  Znf_GATA UniProtKB/TrEMBL
NCBI Gene 100362346 ENTREZGENE
PANTHER PTHR10865 UniProtKB/TrEMBL
Pfam BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  GATA UniProtKB/TrEMBL
  MTA_R1 UniProtKB/TrEMBL
  Myb_DNA-binding UniProtKB/TrEMBL
PhenoGen Mta3 PhenoGen
PROSITE BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
SMART BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
  ZnF_GATA UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
UniProt A0A0G2JTK6_RAT UniProtKB/TrEMBL
  A0A8I5ZYK6_RAT UniProtKB/TrEMBL
  A0A8I6A0K7_RAT UniProtKB/TrEMBL
  D3ZPH3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-09-08 Mta3  metastasis associated 1 family, member 3  LOC100362346  metastasis associated 3  Data Merged 737654 APPROVED
2010-05-05 LOC100362346  metastasis associated 3      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-08-29 Mta3  metastasis associated 1 family, member 3  Mta3  metastasis associated 3   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Mta3  metastasis associated 3   Mta3_predicted  metastasis associated 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mta3_predicted  metastasis associated 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED