Slc4a1ap (solute carrier family 4 member 1 adaptor protein)

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Gene: Slc4a1ap (solute carrier family 4 member 1 adaptor protein) Rattus norvegicus

Analyze

Symbol:

Slc4a1ap

Name:

solute carrier family 4 member 1 adaptor protein

RGD ID:

1307080

Description:

Predicted to have mRNA binding activity. Predicted to localize to nucleoplasm and plasma membrane. Orthologous to human SLC4A1AP (solute carrier family 4 member 1 adaptor protein); INTERACTS WITH 17alpha-ethynylestradiol; 2,6-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

kanadaptin; LOC298805; solute carrier family 4 (anion exchanger), member 1, adaptor protein

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	6	26,214,083 - 26,241,337 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	26,214,335 - 26,241,337 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	36,037,605 - 36,064,887 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	24,966,415 - 24,969,487 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	24,969,374 - 24,996,865 (-)	NCBI
Celera	6	24,400,906 - 24,428,310 (-)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dinitrotoluene (EXP)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP)

clofibrate (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

enzyme inhibitor (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

hexadecanoic acid (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methyl methanesulfonate (ISO)

N-methyl-N-nitrosourea (ISO)

paracetamol (ISO)

phenylephrine (EXP)

sodium arsenite (EXP)

Soman (EXP)

sulindac (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

intracellular membrane-bounded organelle (ISO)

nucleoplasm (IEA,ISO)

plasma membrane (IEA,ISO)

Molecular Function

mRNA binding (IBA)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Slc4a1ap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	6	26,214,083 - 26,241,337 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	26,214,335 - 26,241,337 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	36,037,605 - 36,064,887 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	24,966,415 - 24,969,487 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	24,969,374 - 24,996,865 (-)	NCBI
Celera	6	24,400,906 - 24,428,310 (-)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

SLC4A1AP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	27,663,471 - 27,694,976 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	27,663,471 - 27,694,980 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	27,886,338 - 27,917,847 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	27,739,842 - 27,771,351 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	27,797,988 - 27,829,482	NCBI
Celera	2	27,731,809 - 27,763,317 (+)	NCBI
Cytogenetic Map	2	p23.3	NCBI
HuRef	2	27,627,294 - 27,659,109 (+)	NCBI		HuRef
CHM1_1	2	27,817,073 - 27,848,599 (+)	NCBI		CHM1_1

Slc4a1ap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	31,684,125 - 31,723,318 (+)	NCBI	GRCm39		mm39
GRCm38	5	31,526,781 - 31,561,755 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	31,526,995 - 31,556,932 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	31,829,368 - 31,856,411 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	5	31,803,602 - 31,830,624 (+)	NCBI			mm8
Celera	5	29,005,884 - 29,032,691 (+)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI

Slc4a1ap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	9,617,269 - 9,654,458 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955469	9,617,238 - 9,654,972 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC4A1AP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	27,747,433 - 27,778,466 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	27,747,433 - 27,778,466 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	27,661,396 - 27,692,923 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

MRPL33
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	17	21,784,183 - 21,793,484 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	17	21,784,127 - 21,793,486 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Slc4a1ap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936493	4,931,755 - 4,959,628 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC4A1AP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	111,453,816 - 111,531,625 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	111,503,994 - 111,532,133 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	118,470,245 - 118,497,762 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103220585
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	79,934,049 - 79,965,589 (-)	NCBI
ChlSab1.1 Ensembl	14	79,931,917 - 79,966,493 (-)	Ensembl

Slc4a1ap
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624738	9,684,427 - 9,735,021 (+)	NCBI

Position Markers

RH130046

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	26,214,104 - 26,214,285	NCBI	Rnor6.0
Rnor_5.0	6	36,037,626 - 36,037,807	UniSTS	Rnor5.0
RGSC_v3.4	6	24,966,441 - 24,966,622	UniSTS	RGSC3.4
Celera	6	24,400,927 - 24,401,108	UniSTS
Cytogenetic Map	6	q13	UniSTS
RH 3.4 Map	6	89.0	UniSTS

RH135398

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	26,228,796 - 26,228,979	NCBI	Rnor6.0
Rnor_5.0	6	36,052,319 - 36,052,502	UniSTS	Rnor5.0
RGSC_v3.4	6	24,981,233 - 24,981,416	UniSTS	RGSC3.4
Celera	6	24,415,938 - 24,416,121	UniSTS
Cytogenetic Map	6	q13	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	35623029	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	35623029	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	35623029	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	35623029	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	35623029	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	41917988	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	42388212	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	42388212	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42388212	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	42388212	Rat
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	42388212	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	43665660	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	43665660	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	43665660	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	44015370	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	44570292	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	75623393	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	1120393	28706721	Rat
2292589	Emca10	Estrogen-induced mammary cancer QTL 10		0.048	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	1120393	46120393	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	1120393	75023446	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	2537030	111715717	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	6161722	76002731	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	6161722	76002731	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	7009971	115379601	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	10173862	55173862	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	13122958	34367603	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	13122958	57516539	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	16810107	61810107	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	16810107	61810107	Rat
8552910	Pigfal5	Plasma insulin-like growth factor 1 level QTL 5	4.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	19417887	64417887	Rat
1641898	Colcr4	Colorectal carcinoma resistance QTL4	3.71	0.0007	intestine integrity trait (VT:0010554)	well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)	6	21515302	65784818	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	22042854	84763421	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	22042854	84763421	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	149
Count of miRNA genes:	116
Interacting mature miRNAs:	125
Transcripts:	ENSRNOT00000006525
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	41	35	20	19	20	8	11	74	32	41	11	8
Low		2	22	21		21				3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07063275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AABR07063276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01042305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01042306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01042307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000006525 ⟹ ENSRNOP00000006525

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	26,214,335 - 26,241,337 (-)	Ensembl

RefSeq Acc Id:

NM_001106709 ⟹ NP_001100179

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	26,214,083 - 26,241,337 (-)	NCBI
Rnor_5.0	6	36,037,605 - 36,064,887 (-)	NCBI
RGSC_v3.4	6	24,966,415 - 24,969,487 (-)	RGD
Celera	6	24,400,906 - 24,428,310 (-)	NCBI

Sequence:

show sequence

ATGGCTGATGCTACCTCTCAGTTAGAAGCGCCAGCACCTCAGGATGTTAGTAGCGAGTTTAAGA
AGCCTGTTTTGCCGGTGCCTCCCGCAGTGCGGAGTAAGGCTCCGGCCTCCAGTCCATCAGTTCC
TGAAGATGTGAAGAAGGAATGTAGCACGGCGCAGCTAGACTCTGGATGTGGGGAGCCCGAGGTC
TCGCCACCGCAGCCGGACAGCGAGGAGACTGGGGGTCCACCGGTGGAACAGCTCCGCTCTCCGA
GGGTAGCTCCTGCTTCTGGCGGTCCGACCCGGGCTCCCCCGTACCAAGAGCCATCGTGGGGCAG
CCCAGCCACGGCCCCTTACAGTCTCGAAACCCTGAAGGGTGGCACCATCCTTGGTACACGCACC
TTGAAAGACACGAGCTACTGCCTTTTCGGGAGGCTTGCTAGCTGTGACATATGCCTGGAGCATC
CTTCCGTGTCTCGGTACCATGCTGTACTACAGCACCGGGGGTCGGATCCCAGCGGAGACTCTGA
GGATCAGGGGCAGGGCTTTTATCTCTATGATCTGGGAAGTACCCACGGCACTTTCCTCAACAAA
ACTCGCATCCCACCCCGCACTTACTGTAGAGTCCATGTCGGGCACGTTATTCGCTTTGGAGGCA
GCACTCGGCTCTTTATCCTTCAGGGACCAGAGGAAGACCGAGAGGCAGAATCTGAATTAACAGT
AACACAGTTGAAGGAACTTCGCAAACAGCAGCAGGCGTTATTGGAGAAGAAGATGTTAGGTGAA
GATTCAGATGAAGAAGATGAAGCAGATACCACTGCAGGGAAGAGAAATACAAGTGGTCAAGATG
AGGAGATGGGTTGCACGTGGGGAATGGGAGAAGATGCTGTAGAGGATGAGGCCGAGGAGAACCC
CATTGCCTTGGAGTTTCAGCAGGACCGGGAGGCGTTTTATATAAAGGATCCGAAGAAGGCTCTT
CAAGGCTTCTTTGACAGAGAAGGAGAAGAGTTGGAATATGAATTTGATGAGCAGGGACATAGCA
CTTGGCTCTGCAGGGTGAGGTTACCGGTAGATGATTCAACTGGGAAACAGCTGGTGGCTGAGGC
CATTCACTCAGGAAAGAAAAAAGAAGCAATGATACAGTGCTCACTGGAAGCTTGTCGGATCCTT
GATACCTTGGGCTTGCTACGGCAGGAAGCAGTATCTCGGAAAAGGAAAGCCAAGAACTGGGAAG
ATGAGGATTTTTATGACAGTGATGATGATACATTCCTCGATCGGACCGGCCTGGTCGAGAAGAA
GCGCTTGAACCGGATGAAGAAGGCTGGCAAGATTGATGAGAAGCCAGAAACTTTTGAGTCACTG
GTTGCAAAACTAAATGATGCCGAAAGGGAACTCTCTGAGATTTCTGAAAGGCTCAAGGCATCAA
GCAAAGTTCAGTCAGAATCATCGTCTCAGGATTCTTTAGATGCGTTCATGTCAGAAATGAAATC
AGGGAGCACGTTAGATGGGGTGTCCCGGAAGAAACTTCATCTGAGGACTTTTGAACTACGGAAA
GAACAACAGAGACTGAAAGGGTTAATAAAACTTGTAAAGCCAGCAGAGATCCCAGAACTAAAGA
AAACTGAACTTCAGACTACAAATGCAGAAAACAAAACTAAGAAACTTGCACTGCCTCTCTTTGG
TGCCATGAAAGGAGGAAGCAAATTCAAATTAAAAACTGGAACAGTAGGGAAGTTGCCACCCAAG
CGTCCTGAACTCCCTCCAGCTTTAATGCAAATGAAGGATGAACCTGAAGTAGAGGAGGAGGAGG
AAGAGGAAGAGGAGGAGAAAGCAAAGGAGGAGCATGAAGAAGGAGTGGAGGACGGAGGTGTCAG
GCTGTCTCAGGGGCCGGAGCCAGAGCCGGAAGCAGCCGGGGAGCACCCGGGTGCTCCCCCAGAG
CCCTCGTGCTCCAAGGAGACAAAGAGCCATGCAGCACCAGAGAATGAATGTAAAAAAGACAGAG
ATGAGTTGAAGAAAAAGAAATCTGGGCCAGGGAAATTTCCACCCATACTTTCTTCCAAATATCC
TGAGGATGACCCAGACTACTGCGTATGGGTCCCACCTGAAGGTCAAAGTGGAGATGGCAGAACG
CATCTTAATGACAAGTATGGCTATTGATTGGTTCAGAGTCCCAGAGGAAGACCTTGTGGGCCAC
AGGATGTCTGGGAGAAGGCATCAAGTCTGACCCGGGAAGTTCAGACGGCCATTTGTAAAATCTG
GTGACTGGCTTTTTCTTCTGTACCCCTGACTTCCTAAACTCACCTGCCCATTGGATTCTCCTGG
ATTTCAGTGTTTATATTTAAGTGTCTGTGTATATATGTAAAAAAGAACCATGCACACTGAGAAT
AAAGTAAGAGACATGACCCATGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100179	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM02900	(Get FASTA)	NCBI Sequence Viewer
	EDM02901	(Get FASTA)	NCBI Sequence Viewer
	EDM02902	(Get FASTA)	NCBI Sequence Viewer
	EDM02903	(Get FASTA)	NCBI Sequence Viewer
	EDM02904	(Get FASTA)	NCBI Sequence Viewer
	EDM02905	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001100179 ⟸ NM_001106709

- Sequence:

show sequence

MADATSQLEAPAPQDVSSEFKKPVLPVPPAVRSKAPASSPSVPEDVKKECSTAQLDSGCGEPEV
SPPQPDSEETGGPPVEQLRSPRVAPASGGPTRAPPYQEPSWGSPATAPYSLETLKGGTILGTRT
LKDTSYCLFGRLASCDICLEHPSVSRYHAVLQHRGSDPSGDSEDQGQGFYLYDLGSTHGTFLNK
TRIPPRTYCRVHVGHVIRFGGSTRLFILQGPEEDREAESELTVTQLKELRKQQQALLEKKMLGE
DSDEEDEADTTAGKRNTSGQDEEMGCTWGMGEDAVEDEAEENPIALEFQQDREAFYIKDPKKAL
QGFFDREGEELEYEFDEQGHSTWLCRVRLPVDDSTGKQLVAEAIHSGKKKEAMIQCSLEACRIL
DTLGLLRQEAVSRKRKAKNWEDEDFYDSDDDTFLDRTGLVEKKRLNRMKKAGKIDEKPETFESL
VAKLNDAERELSEISERLKASSKVQSESSSQDSLDAFMSEMKSGSTLDGVSRKKLHLRTFELRK
EQQRLKGLIKLVKPAEIPELKKTELQTTNAENKTKKLALPLFGAMKGGSKFKLKTGTVGKLPPK
RPELPPALMQMKDEPEVEEEEEEEEEEKAKEEHEEGVEDGGVRLSQGPEPEPEAAGEHPGAPPE
PSCSKETKSHAAPENECKKDRDELKKKKSGPGKFPPILSSKYPEDDPDYCVWVPPEGQSGDGRT
HLNDKYGY

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RefSeq Acc Id:

ENSRNOP00000006525 ⟸ ENSRNOT00000006525

Protein Domains

FHA

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694431

Promoter ID:

EPDNEW_R4956

Type:

single initiation site

Name:

Slc4a1ap_1

Description:

solute carrier family 4 member 1 adaptor protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	26,241,351 - 26,241,411	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307080	AgrOrtholog
Ensembl Genes	ENSRNOG00000004901	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000006525	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006525	ENTREZGENE, UniProtKB/TrEMBL
InterPro	FHA_dom	UniProtKB/TrEMBL
	SMAD_FHA_domain	UniProtKB/TrEMBL
NCBI Gene	298805	ENTREZGENE
Pfam	FHA	UniProtKB/TrEMBL
PhenoGen	Slc4a1ap	PhenoGen
PROSITE	FHA_DOMAIN	UniProtKB/TrEMBL
SMART	FHA	UniProtKB/TrEMBL
Superfamily-SCOP	SMAD_FHA	UniProtKB/TrEMBL
UniGene	Rn.226907	ENTREZGENE
	Rn.36032	ENTREZGENE
UniProt	D3ZTF1_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc4a1ap	solute carrier family 4 member 1 adaptor protein	Slc4a1ap	solute carrier family 4 (anion exchanger), member 1, adaptor protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc4a1ap	solute carrier family 4 (anion exchanger), member 1, adaptor protein	Slc4a1ap_predicted	solute carrier family 4 (anion exchanger), member 1, adaptor protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slc4a1ap_predicted	solute carrier family 4 (anion exchanger), member 1, adaptor protein (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)