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Pathways

CHROMATIN MODIFICATION/REMODELING PATHWAY (PW:0001337)

View Ontology Report

Description

Epigenetic changes, the modification and remodeling of chromatin, play a key role in the differential expression of genes. Chromatin modification and remodeling directly affect the relative relaxation or compaction of chromatin and thus, the extent to which DNA replication, transcription, damage response and repair, associated RNA processing and splicing are promoted or are silenced, respectively. The basic unit of chromatin is the nucleosome - it consists of 145-147 base pairs of DNA wrapped ar

Pathway Diagram:

Elsevier Inc. chromatin remodeling pathway ---> gene expression gene expression histone modification pathway ---> gene expression histone modification pathway chromatin remodeling pathway DNA modification pathway DNA modification pathway ---> gene expression chromatin remodeling pathway <--> DNA modification pathway histone modification pathway <--> chromatin remodeling pathway DNA modification pathway <--> histone modification pathway
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Genes in Pathway:


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altered DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase ISO in silico assessment of loss of DNA-protein interactions and observed enhancement of DNA repair capacity (DRC) in the context of nucleotide excision repair (NER) pathway for SNP RGD PMID:24004570 RGD:9588971 NCBI chr 4:150,565,646...150,577,433
Ensembl chr 4:150,565,655...150,577,578
JBrowse link
altered SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A ISO RGD PMID:23355908 RGD:8694154 NCBI chr 2:117,413,206...117,436,758
Ensembl chr 2:117,418,601...117,436,754
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO RGD PMID:23355908 RGD:8694154 NCBI chr 5:151,192,014...151,269,291
Ensembl chr 5:151,192,014...151,265,386
JBrowse link
G Arid1b AT-rich interaction domain 1B ISO RGD PMID:23355908 RGD:8694154 NCBI chr 1:47,973,199...48,328,793
Ensembl chr 1:47,973,997...48,328,793
JBrowse link
G Pbrm1 polybromo 1 ISO RGD PMID:23355908 RGD:8694154 NCBI chr16:6,219,933...6,319,336
Ensembl chr16:6,219,917...6,319,336
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:23355908 RGD:8694154 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:28,443,810...28,535,070
JBrowse link
CHD family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd3 chromodomain helicase DNA binding protein 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chr10:54,562,437...54,588,842
Ensembl chr10:54,562,437...54,588,810
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 4:159,584,623...159,617,867
Ensembl chr 4:159,584,654...159,617,866
JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 5:168,130,851...168,181,705
Ensembl chr 5:168,130,575...168,179,441
JBrowse link
G Gatad2a GATA zinc finger domain containing 2A ISO RGD PMID:24880148 RGD:9585661 NCBI chr16:19,463,500...19,553,497
Ensembl chr16:19,463,500...19,553,497
JBrowse link
G Gatad2b GATA zinc finger domain containing 2B ISO RGD PMID:24880148 RGD:9585661 NCBI chr 2:178,046,192...178,127,633
Ensembl chr 2:178,046,085...178,147,315
JBrowse link
G Hdac1 histone deacetylase 1 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:147,138,156...147,165,387
JBrowse link
G Hdac2 histone deacetylase 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chr20:42,101,815...42,126,486
Ensembl chr20:42,102,861...42,126,311
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chr18:66,449,196...66,516,112
Ensembl chr18:66,449,358...66,516,111
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 7:9,961,053...9,970,845
Ensembl chr 7:9,963,797...9,970,265
JBrowse link
G Mta1 metastasis associated 1 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 6:137,999,845...138,038,696
Ensembl chr 6:137,999,915...138,038,696
JBrowse link
G Mta2 metastasis associated 1 family, member 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 1:215,267,286...215,276,008
Ensembl chr 1:215,267,046...215,276,062
JBrowse link
G Mta3 metastasis associated 1 family, member 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 6:16,619,575...16,739,732
Ensembl chr 6:16,621,998...16,739,485
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:24880148 RGD:9585661 NCBI chr 5:146,940,207...146,959,501
Ensembl chr 5:146,922,611...146,959,501
JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:24880148 RGD:9585661 NCBI chr  X:35,544,873...35,563,030
Ensembl chr  X:35,544,873...35,563,030
JBrowse link
DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxxc1 CXXC finger protein 1 ISO RGD PMID:23697932 RGD:9479164 NCBI chr18:70,088,407...70,093,786
Ensembl chr18:70,088,460...70,093,778
JBrowse link
G Dnmt1 DNA methyltransferase 1 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 8:27,716,797...27,763,405
Ensembl chr 8:27,716,797...27,763,119
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 6:32,507,316...32,621,678
Ensembl chr 6:32,512,070...32,614,970
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 3:162,590,777...162,629,313
Ensembl chr 3:162,604,037...162,629,313
JBrowse link
G Ebf1 EBF transcription factor 1 ISO RGD PMID:24825349 RGD:8695944 NCBI chr10:29,597,221...29,990,571
Ensembl chr10:29,601,351...29,988,702
JBrowse link
G Kdm2a lysine demethylase 2A ISO RGD PMID:23697932 RGD:9479164 NCBI chr 1:211,041,859...211,125,749
Ensembl chr 1:211,041,885...211,084,479
JBrowse link
G Kdm2b lysine demethylase 2B ISO RGD PMID:23697932 RGD:9479164 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:39,235,301...39,362,127
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO RGD PMID:23697932 RGD:9479164 NCBI chr 8:54,013,547...54,089,219
Ensembl chr 8:54,013,547...54,089,317
JBrowse link
G Kmt2c lysine methyltransferase 2C ISO RGD PMID:23697932 RGD:9479164 NCBI chr 4:10,353,698...10,755,965
Ensembl chr 4:10,353,735...10,568,620
JBrowse link
G Mbd1 methyl-CpG binding domain protein 1 ISO RGD PMID:23324617 RGD:8695954 NCBI chr18:70,145,093...70,159,744
Ensembl chr18:70,145,114...70,159,703
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr18:66,449,196...66,516,112
Ensembl chr18:66,449,358...66,516,111
JBrowse link
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase ISO RGD PMID:23324617 RGD:8695954 NCBI chr 4:150,565,646...150,577,433
Ensembl chr 4:150,565,655...150,577,578
JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr  X:156,932,481...156,995,981
Ensembl chr  X:156,941,234...156,943,560
JBrowse link
G Nanog Nanog homeobox ISO RGD PMID:24825349 RGD:8695944 NCBI chr 4:157,615,687...157,623,061
Ensembl chr 4:157,615,687...157,623,061
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase ISO RGD PMID:24825349 RGD:8695944 NCBI chr  X:70,811,317...70,856,123
Ensembl chr  X:70,811,319...70,856,123
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma ISO RGD PMID:24825349 RGD:8695944 NCBI chr 4:150,095,743...150,221,104
Ensembl chr 4:150,095,787...150,221,104
JBrowse link
G Prdm14 PR/SET domain 14 ISO RGD PMID:24825349 RGD:8695944 NCBI chr 5:10,864,137...10,876,666
Ensembl chr 5:10,864,137...10,876,666
JBrowse link
G Sin3a SIN3 transcription regulator family member A ISO RGD PMID:24825349 RGD:8695944 NCBI chr 8:66,377,471...66,432,150
Ensembl chr 8:66,381,657...66,434,542
JBrowse link
G Spi1 Spi-1 proto-oncogene ISO RGD PMID:24825349 RGD:8695944 NCBI chr 3:97,529,509...97,548,204
Ensembl chr 3:97,527,572...97,549,540
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr20:25,766,806...25,839,598
Ensembl chr20:25,760,057...25,832,730
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 2:224,662,654...224,746,819
Ensembl chr 2:224,662,654...224,746,186
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 ISO RGD PMID:22770212 PMID:23697932 PMID:24825349 RGD:8695943, RGD:9479164, RGD:8695944 NCBI chr 4:117,425,106...117,525,495
Ensembl chr 4:117,429,857...117,520,486
JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 9:1,220,162...1,241,792
Ensembl chr 9:1,222,063...1,241,792
JBrowse link
G Uhrf2 ubiquitin like with PHD and ring finger domains 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 1:237,224,050...237,291,406
Ensembl chr 1:237,228,456...237,292,353
JBrowse link
G Zbtb33 zinc finger and BTB domain containing 33 ISO RGD PMID:23324617 RGD:8695954 NCBI chr  X:121,828,960...121,836,193
Ensembl chr  X:121,828,952...121,839,399
JBrowse link
G Zbtb38 zinc finger and BTB domain containing 38 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 8:106,124,181...106,231,215
Ensembl chr 8:106,157,084...106,230,951
JBrowse link
G Zbtb4 zinc finger and BTB domain containing 4 ISO RGD PMID:23324617 RGD:8695954 NCBI chr10:54,979,421...55,000,215
Ensembl chr10:54,979,648...55,000,215
JBrowse link
G Zfp57 zinc finger protein 57 ISO RGD PMID:23324617 RGD:8695954 NCBI chr20:1,526,565...1,546,480
Ensembl chr20:1,527,961...1,535,041
JBrowse link
histone modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp2 AE binding protein 2 ISO RGD PMID:24148750 RGD:9479059 NCBI chr 4:175,258,286...175,297,149
Ensembl chr 4:175,258,887...175,326,422
JBrowse link
G Aplf aprataxin and PNKP like factor ISO RGD PMID:23288364 RGD:9068945 NCBI chr 4:121,627,800...121,679,980
Ensembl chr 4:121,627,800...121,679,961
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chr20:33,436,632...33,451,478
Ensembl chr20:33,436,707...33,449,639
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chr19:41,085,786...41,100,352
Ensembl chr19:41,086,114...41,100,352
JBrowse link
G Ash1l ASH1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:176,644,393...176,780,848
Ensembl chr 2:176,644,924...176,780,847
JBrowse link
G Ash2l ASH2 like histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr16:72,943,527...72,966,791
Ensembl chr16:72,944,949...72,967,839
JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chr16:6,453,126...6,461,952
Ensembl chr16:6,452,974...6,461,952
JBrowse link
G Birc5 baculoviral IAP repeat-containing 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chr10:103,567,369...103,580,069
Ensembl chr10:103,572,080...103,582,155
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr17:86,240,683...86,250,044
Ensembl chr17:86,243,491...86,250,024
JBrowse link
G Bptf bromodomain PHD finger transcription factor ISO RGD PMID:24686119 PMID:23642229 RGD:9479075, RGD:9479074 NCBI chr10:92,480,007...92,582,485
Ensembl chr10:92,480,007...92,582,413
JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 9:2,073,927...2,076,469
Ensembl chr 9:2,073,184...2,084,185
JBrowse link
G Brd1 bromodomain containing 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 7:121,653,859...121,701,700
Ensembl chr 7:121,653,859...121,701,700
JBrowse link
G Brd2 bromodomain containing 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chr20:4,728,282...4,737,286
Ensembl chr20:4,728,951...4,737,290
JBrowse link
G Brd3 bromodomain containing 3 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 3:31,173,332...31,227,749
Ensembl chr 3:31,173,332...31,227,629
JBrowse link
G Brd4 bromodomain containing 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 7:11,866,997...11,946,575
Ensembl chr 7:11,866,997...11,946,923
JBrowse link
G Brd7 bromodomain containing 7 ISO RGD PMID:24686119 RGD:9479075 NCBI chr19:34,882,238...34,910,944
Ensembl chr19:34,882,304...34,910,944
JBrowse link
G Brdt bromodomain testis associated ISO RGD PMID:24686119 RGD:9479075 NCBI chr14:2,532,275...2,590,780
Ensembl chr14:2,532,275...2,590,760
JBrowse link
G Brf1 BRF1 general transcription factor IIIB subunit ISO RGD PMID:23642229 RGD:9479074 NCBI chr 6:137,854,055...137,902,629
Ensembl chr 6:137,855,449...137,902,386
JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 8:28,373,370...28,418,056
Ensembl chr 8:28,373,362...28,418,056
JBrowse link
G Cbx2 chromobox 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:104,777,054...104,785,922
Ensembl chr10:104,777,056...104,785,926
JBrowse link
G Cbx4 chromobox 4 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:104,835,685...104,841,727
Ensembl chr10:104,835,685...104,841,727
JBrowse link
G Cbx5 chromobox 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 7:136,203,827...136,254,575
Ensembl chr 7:136,211,649...136,229,118
JBrowse link
G Cbx6 chromobox 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 7:113,253,364...113,263,413
Ensembl chr 7:113,253,364...113,263,413
JBrowse link
G Cbx7 chromobox 7 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 7:113,341,030...113,358,716
Ensembl chr 7:113,341,030...113,358,346
JBrowse link
G Cbx8 chromobox 8 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:104,793,062...104,795,500
Ensembl chr10:104,793,062...104,795,500
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO RGD PMID:23288364 RGD:9068945 NCBI chr 9:961,225...987,825
Ensembl chr 9:961,084...987,868
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO RGD PMID:23288364 RGD:9068945 NCBI chr11:46,670,560...46,690,739
Ensembl chr11:46,670,630...46,690,733
JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 1:65,334,905...65,402,270
Ensembl chr 1:65,335,218...65,401,280
JBrowse link
G Crebbp CREB binding lysine acetyltransferase ISO RGD PMID:21151613 PMID:24686119 RGD:9104959, RGD:9479075 NCBI chr10:11,842,307...11,968,266
Ensembl chr10:11,822,620...11,968,266
JBrowse link
G Cxxc1 CXXC finger protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr18:70,088,407...70,093,786
Ensembl chr18:70,088,460...70,093,778
JBrowse link
G Daxx death-domain associated protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr20:4,971,973...4,978,062
Ensembl chr20:4,971,941...4,977,720
JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 7:9,569,439...9,607,095
Ensembl chr 7:9,569,439...9,607,095
JBrowse link
G Dpf3 double PHD fingers 3 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 6:108,577,792...108,856,724
Ensembl chr 6:108,577,183...108,856,798
JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr 6:26,872,812...26,893,580
Ensembl chr 6:26,872,732...26,894,930
JBrowse link
G Eed embryonic ectoderm development ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr 1:153,280,419...153,307,537
Ensembl chr 1:153,280,422...153,307,500
JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 3:27,978,888...28,127,178
Ensembl chr 3:27,978,888...28,127,349
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 ISO RGD PMID:23200123 PMID:23642229 RGD:7242632, RGD:9479074 NCBI chr20:3,924,263...3,941,238
Ensembl chr20:3,924,263...3,941,384
JBrowse link
G Ep300 EP300 lysine acetyltransferase ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:114,946,982...115,058,574
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr10:86,626,307...86,662,257
Ensembl chr10:86,626,308...86,652,620
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:23200123 PMID:24148750 PMID:23473600 RGD:7242632, RGD:9479059, RGD:9479058 NCBI chr 4:77,624,223...77,698,598
Ensembl chr 4:77,624,223...77,687,183
JBrowse link
G H2ax H2A.X variant histone ISO RGD PMID:24614311 RGD:9075965 NCBI chr 8:53,568,718...53,570,072
Ensembl chr 8:53,568,281...53,573,079
JBrowse link
G H2az1 H2A.Z variant histone 1 ISO RGD PMID:24696452 RGD:9074213 NCBI chr 2:229,026,464...229,031,411
Ensembl chr 2:229,028,843...229,031,411
JBrowse link
G H3f3a H3.3 histone A ISO RGD PMID:24614311 RGD:9075965 NCBI chr13:95,065,085...95,076,695
Ensembl chr13:95,065,085...95,076,695
JBrowse link
G H3f3b H3.3 histone B ISO RGD PMID:24614311 RGD:9075965 NCBI chr10:101,755,404...101,764,616
Ensembl chr10:101,755,404...101,757,636
JBrowse link
G Hat1 histone acetyltransferase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 3:76,624,442...76,672,701
Ensembl chr 3:76,624,869...76,672,696
JBrowse link
G Hcfc1 host cell factor C1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr  X:156,839,100...156,864,132
Ensembl chr  X:156,839,100...156,863,813
JBrowse link
G Hdac1 histone deacetylase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:147,138,156...147,165,387
JBrowse link
G Hdac10 histone deacetylase 10 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:122,078,768...122,084,457
Ensembl chr 7:122,078,768...122,083,870
JBrowse link
G Hdac11 histone deacetylase 11 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 4:125,203,044...125,224,584
Ensembl chr 4:125,202,299...125,224,582
JBrowse link
G Hdac2 histone deacetylase 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chr20:42,101,815...42,126,486
Ensembl chr20:42,102,861...42,126,311
JBrowse link
G Hdac3 histone deacetylase 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chr18:30,021,847...30,041,061
Ensembl chr18:30,021,941...30,041,025
JBrowse link
G Hdac4 histone deacetylase 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 9:99,950,972...100,200,994
Ensembl chr 9:99,955,116...100,197,637
JBrowse link
G Hdac5 histone deacetylase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr10:87,653,139...87,688,078
Ensembl chr10:87,652,656...87,694,244
JBrowse link
G Hdac6 histone deacetylase 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chr  X:17,222,538...17,244,373
Ensembl chr  X:17,222,856...17,244,370
JBrowse link
G Hdac7 histone deacetylase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:130,803,013...130,841,181
Ensembl chr 7:130,803,013...130,841,017
JBrowse link
G Hdac8 histone deacetylase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chr  X:71,425,240...71,632,865
Ensembl chr  X:71,394,928...71,632,865
JBrowse link
G Hdac9 histone deacetylase 9 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 6:56,489,472...57,351,654
Ensembl chr 6:56,490,988...57,351,835
JBrowse link
G Hira histone cell cycle regulator ISO RGD PMID:23288364 RGD:9068945 NCBI chr11:95,528,831...95,637,565
Ensembl chr11:95,528,831...95,638,549
JBrowse link
G Hjurp Holliday junction recognition protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr 9:96,301,183...96,315,587
Ensembl chr 9:96,302,530...96,315,657
JBrowse link
G Ing2 inhibitor of growth family, member 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chr16:51,305,311...51,316,177
Ensembl chr16:51,307,466...51,316,177
JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr17:19,983,217...20,163,598
Ensembl chr17:19,983,217...20,161,970
JBrowse link
G Jmjd1c jumonji domain containing 1C ISO RGD PMID:23200123 RGD:7242632 NCBI chr20:21,330,990...21,508,580
Ensembl chr20:21,330,990...21,461,916
JBrowse link
G Kat2a lysine acetyltransferase 2A ISO RGD PMID:21151613 PMID:23642229 RGD:9104959, RGD:9479074 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:86,132,535...86,140,485
JBrowse link
G Kat2b lysine acetyltransferase 2B ISO RGD PMID:21151613 RGD:9104959 NCBI chr 9:6,799,101...6,903,616
Ensembl chr 9:6,799,145...6,903,616
JBrowse link
G Kat5 lysine acetyltransferase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:212,325,090...212,332,587
JBrowse link
G Kat6a lysine acetyltransferase 6A ISO RGD PMID:21151613 RGD:9104959 NCBI chr16:75,787,411...75,868,584
Ensembl chr16:75,787,411...75,866,099
JBrowse link
G Kat6b lysine acetyltransferase 6B ISO RGD PMID:21151613 RGD:9104959 NCBI chr15:2,688,535...2,861,443
Ensembl chr15:2,688,811...2,844,343
JBrowse link
G Kat7 lysine acetyltransferase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr10:80,718,335...80,752,387
Ensembl chr10:80,718,335...80,752,387
JBrowse link
G Kat8 lysine acetyltransferase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:191,954,827...191,967,107
Ensembl chr 1:191,954,438...191,967,105
JBrowse link
G Kdm1a lysine demethylase 1A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:154,066,436...154,121,913
Ensembl chr 5:154,065,543...154,121,775
JBrowse link
G Kdm1b lysine demethylase 1B ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:17,809,232...17,850,141
Ensembl chr17:17,809,232...17,850,068
JBrowse link
G Kdm2a lysine demethylase 2A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:211,041,859...211,125,749
Ensembl chr 1:211,041,885...211,084,479
JBrowse link
G Kdm2b lysine demethylase 2B ISO RGD PMID:23200123 RGD:7242632 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:39,235,301...39,362,127
JBrowse link
G Kdm3a lysine demethylase 3A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:105,189,208...105,233,526
Ensembl chr 4:105,189,208...105,233,370
JBrowse link
G Kdm3b lysine demethylase 3B ISO RGD PMID:23200123 RGD:7242632 NCBI chr18:26,655,004...26,710,814
Ensembl chr18:26,655,687...26,710,814
JBrowse link
G Kdm4a lysine demethylase 4A ISO RGD PMID:23200123 PMID:23642229 PMID:24035451 RGD:7242632, RGD:9479074, RGD:9479148 NCBI chr 5:136,958,178...137,004,942
Ensembl chr 5:136,958,178...137,004,951
JBrowse link
G Kdm4b lysine demethylase 4B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 9:1,245,885...1,324,384
Ensembl chr 9:1,245,899...1,324,384
JBrowse link
G Kdm4c lysine demethylase 4C ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:93,146,404...93,353,040
Ensembl chr 5:93,146,969...93,353,040
JBrowse link
G Kdm4d lysine demethylase 4D ISO RGD PMID:23200123 RGD:7242632 NCBI chr 8:19,561,253...19,586,412
Ensembl chr 8:19,548,676...19,587,331
JBrowse link
G Kdm5a lysine demethylase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:155,238,124...155,316,121
Ensembl chr 4:155,238,044...155,316,121
JBrowse link
G Kdm5b lysine demethylase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chr13:48,554,367...48,625,721
Ensembl chr13:48,554,420...48,626,423
JBrowse link
G Kdm5c lysine demethylase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:24,821,568...24,866,423
Ensembl chr  X:24,824,859...24,866,423
JBrowse link
G Kdm5d lysine demethylase 5D ISO RGD PMID:23200123 RGD:7242632 NCBI chr  Y:551,621...647,742
Ensembl chr  Y:564,261...660,970
JBrowse link
G Kdm6a lysine demethylase 6A ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr  X:6,920,374...7,060,027
Ensembl chr  X:6,920,343...7,059,960
JBrowse link
G Kdm6b lysine demethylase 6B ISO RGD PMID:23200123 RGD:7242632 NCBI chr10:54,619,520...54,641,014
Ensembl chr10:54,619,544...54,629,610
JBrowse link
G Kdm7a lysine demethylase 7A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:68,866,263...68,992,979
Ensembl chr 4:68,871,677...68,931,506
JBrowse link
G Kdm8 lysine demethylase 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:189,444,527...189,459,507
Ensembl chr 1:189,444,555...189,459,491
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr 8:54,013,547...54,089,219
Ensembl chr 8:54,013,547...54,089,317
JBrowse link
G Kmt2b lysine methyltransferase 2B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:94,949,144...94,969,239
Ensembl chr 1:94,949,144...94,968,441
JBrowse link
G Kmt2c lysine methyltransferase 2C ISO RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr 4:10,353,698...10,755,965
Ensembl chr 4:10,353,735...10,568,620
JBrowse link
G Kmt2d lysine methyltransferase 2D ISO RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr 7:131,859,696...131,901,032
Ensembl chr 7:131,859,696...131,900,072
JBrowse link
G Kmt2e lysine methyltransferase 2E ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:12,550,570...12,655,329
Ensembl chr 4:12,550,570...12,619,721
JBrowse link
G Kmt5a lysine methyltransferase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chr12:37,800,339...37,823,706
Ensembl chr12:37,800,344...37,823,783
JBrowse link
G Kmt5al1 lysine methyltransferase 5A like 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:144,439,657...144,441,462 JBrowse link
G Kmt5b lysine methyltransferase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:210,429,672...210,479,042
Ensembl chr 1:210,430,127...210,479,035
JBrowse link
G Kmt5c lysine methyltransferase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:78,128,325...78,135,931
Ensembl chr 1:78,128,325...78,135,931
JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 3:172,014,774...172,053,181
Ensembl chr 3:172,021,416...172,053,181
JBrowse link
G Lbr lamin B receptor ISO RGD PMID:24035451 RGD:9479148 NCBI chr13:96,071,058...96,095,709
Ensembl chr13:96,071,081...96,095,709
JBrowse link
G LOC100911617 protein arginine N-methyltransferase 6-like ISO RGD PMID:24583552 RGD:9479047
G Macroh2a1 macroH2A.1 histone ISO RGD PMID:24696452 RGD:9074213 NCBI chr17:8,484,340...8,547,268
Ensembl chr17:8,484,246...8,547,257
JBrowse link
G Macroh2a2 macroH2A.2 histone ISO RGD PMID:24696452 RGD:9074213 NCBI chr20:30,220,975...30,270,652
Ensembl chr20:30,221,011...30,270,652
JBrowse link
G Mcph1 microcephalin 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr16:77,724,251...77,926,773
Ensembl chr16:77,724,251...77,926,462
JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr20:2,898,496...2,914,960
Ensembl chr20:2,900,308...2,914,960
JBrowse link
G Men1 menin 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 1:213,068,166...213,074,132
Ensembl chr 1:213,068,166...213,074,120
JBrowse link
G Mtf2 metal response element binding transcription factor 2 ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr14:1,784,218...1,828,463
Ensembl chr14:1,783,627...1,828,414
JBrowse link
G Mysm1 myb-like, SWIRM and MPN domains 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 5:114,877,112...114,981,463
Ensembl chr 5:114,889,269...114,942,385
JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chr 7:48,819,464...48,844,108
Ensembl chr 7:48,819,477...48,844,104
JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr 5:135,294,599...135,319,992
Ensembl chr 5:135,294,032...135,319,591
JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 3:164,351,062...164,422,079
Ensembl chr 3:164,351,062...164,421,991
JBrowse link
G Nsd1 nuclear receptor binding SET domain protein 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:9,317,085...9,431,528
Ensembl chr17:9,317,085...9,452,250
JBrowse link
G Nsd3 nuclear receptor binding SET domain protein 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chr16:73,056,748...73,170,082
Ensembl chr16:73,061,694...73,168,130
JBrowse link
G Orc1 origin recognition complex, subunit 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 5:128,552,975...128,581,943
Ensembl chr 5:128,552,991...128,577,071
JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 1:191,053,228...191,055,554 JBrowse link
G Paxip1 PAX interacting protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 4:8,258,930...8,310,490
Ensembl chr 4:8,258,952...8,310,488
JBrowse link
G Pbrm1 polybromo 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chr16:6,219,933...6,319,336
Ensembl chr16:6,219,917...6,319,336
JBrowse link
G Pcgf1 polycomb group ring finger 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 4:117,140,144...117,144,729
Ensembl chr 4:117,142,061...117,145,040
JBrowse link
G Pcgf2 polycomb group ring finger 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr10:83,178,926...83,191,610
Ensembl chr10:83,179,916...83,183,999
JBrowse link
G Pcgf3 polycomb group ring finger 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr14:1,381,976...1,436,709
Ensembl chr14:1,381,380...1,436,912
JBrowse link
G Pcgf5 polycomb group ring finger 5 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 1:243,476,450...243,592,603
Ensembl chr 1:243,476,261...243,587,869
JBrowse link
G Pcgf6 polycomb group ring finger 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 1:255,866,709...255,886,306
Ensembl chr 1:255,866,711...255,886,266
JBrowse link
G Phc1 polyhomeotic homolog 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 4:157,182,348...157,205,504
Ensembl chr 4:157,182,348...157,204,709
JBrowse link
G Phc2 polyhomeotic homolog 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 5:146,285,000...146,383,664
Ensembl chr 5:146,285,008...146,383,663
JBrowse link
G Phc3 polyhomeotic homolog 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 2:114,337,180...114,412,132
Ensembl chr 2:114,337,227...114,405,816
JBrowse link
G Phf1 PHD finger protein 1 ISO RGD PMID:23473600 PMID:23642229 PMID:24035451 PMID:24148750 RGD:9479058, RGD:9479074, RGD:9479148, RGD:9479059 NCBI chr20:5,019,650...5,024,732
Ensembl chr20:5,019,673...5,024,731
JBrowse link
G Phf19 PHD finger protein 19 ISO RGD PMID:23473600 PMID:23642229 PMID:24035451 PMID:24148750 RGD:9479058, RGD:9479074, RGD:9479148, RGD:9479059 NCBI chr 3:38,572,766...38,604,950
Ensembl chr 3:38,572,766...38,593,854
JBrowse link
G Phf2 PHD finger protein 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:15,989,594...16,057,583
Ensembl chr17:15,981,604...16,057,583
JBrowse link
G Phf8 PHD finger protein 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:23,967,126...24,066,473
Ensembl chr  X:23,967,556...24,066,471
JBrowse link
G Prdm16 PR/SET domain 16 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:170,162,275...170,486,371
Ensembl chr 5:170,162,275...170,485,804
JBrowse link
G Prdm2 PR/SET domain 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:160,704,396...160,815,184
Ensembl chr 5:160,705,462...160,815,140
JBrowse link
G Prdm6 PR/SET domain 6 ISO RGD PMID:23200123 RGD:7242632 NCBI chr18:49,102,290...49,206,763
Ensembl chr18:49,102,641...49,206,761
JBrowse link
G Prdm8 PR/SET domain 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr14:11,708,477...11,728,111
Ensembl chr14:11,708,269...11,715,125
JBrowse link
G Prdm9 PR/SET domain 9 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:65,178,666...65,198,851
Ensembl chr 1:65,178,666...65,198,737
JBrowse link
G Prmt1 protein arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 1:104,595,339...104,605,552
Ensembl chr 1:104,595,335...104,604,827
JBrowse link
G Prmt2 protein arginine methyltransferase 2 ISO RGD PMID:24583552 RGD:9479047 NCBI chr20:12,391,388...12,420,096
Ensembl chr20:12,394,268...12,420,108
JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO RGD PMID:24583552 RGD:9479047 NCBI chr15:31,938,927...31,948,318
Ensembl chr15:31,938,719...31,948,426
JBrowse link
G Prmt6 protein arginine methyltransferase 6 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 2:200,615,780...200,620,790
Ensembl chr 2:200,614,979...200,623,308
JBrowse link
G Prmt7 protein arginine methyltransferase 7 ISO RGD PMID:24583552 RGD:9479047 NCBI chr19:51,020,596...51,071,401
Ensembl chr19:51,020,512...51,072,424
JBrowse link
G Rag2 recombination activating 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 3:108,357,399...108,367,186
Ensembl chr 3:108,357,399...108,365,253
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr 5:146,940,207...146,959,501
Ensembl chr 5:146,922,611...146,959,501
JBrowse link
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr13:46,464,389...46,494,244
Ensembl chr13:46,464,389...46,491,238
JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr  X:35,544,873...35,563,030
Ensembl chr  X:35,544,873...35,563,030
JBrowse link
G Ring1 ring finger protein 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr20:4,832,013...4,835,516
Ensembl chr20:4,831,993...4,835,513
JBrowse link
G Rnf2 ring finger protein 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr13:66,103,943...66,136,038
Ensembl chr13:66,083,653...66,133,161
JBrowse link
G Setd1a SET domain containing 1A, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr 1:191,818,752...191,842,167
Ensembl chr 1:191,818,752...191,842,160
JBrowse link
G Setd1b SET domain containing 1B, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr12:39,056,809...39,082,399
Ensembl chr12:39,058,262...39,082,566
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:119,390,207...119,475,863
JBrowse link
G Setd7 SET domain containing 7, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:137,713,545...137,756,319
Ensembl chr 2:137,713,545...137,756,319
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:185,587,722...185,619,084
Ensembl chr 2:185,587,722...185,618,982
JBrowse link
G Sgf29 SAGA complex associated factor 29 ISO RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 1:190,668,803...190,702,500
Ensembl chr 1:190,669,028...190,717,906
JBrowse link
G Sirt1 sirtuin 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr20:25,305,953...25,328,000
Ensembl chr20:25,305,476...25,328,000
JBrowse link
G Sirt2 sirtuin 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:93,181,472...93,204,499
Ensembl chr 1:93,181,224...93,204,499
JBrowse link
G Sirt3 sirtuin 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:205,371,703...205,394,145
Ensembl chr 1:205,371,710...205,394,076
JBrowse link
G Sirt4 sirtuin 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chr12:46,785,852...46,800,179
Ensembl chr12:46,791,898...46,800,173
JBrowse link
G Sirt5 sirtuin 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr17:21,515,982...21,543,529
Ensembl chr17:21,515,985...21,537,442
JBrowse link
G Sirt6 sirtuin 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:8,733,056...8,738,543
Ensembl chr 7:8,732,974...8,738,542
JBrowse link
G Sirt7 sirtuin 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr10:106,394,802...106,401,627
Ensembl chr10:106,394,802...106,401,498
JBrowse link
G Smarca2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 1:233,617,277...233,784,908
Ensembl chr 1:233,617,366...233,784,869
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:28,443,810...28,535,070
JBrowse link
G Smyd1 SET and MYND domain containing 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:104,757,281...104,811,307
Ensembl chr 4:104,760,475...104,870,081
JBrowse link
G Smyd2 SET and MYND domain containing 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr13:103,956,470...103,997,774
Ensembl chr13:103,956,473...103,997,774
JBrowse link
G Smyd3 SET and MYND domain containing 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chr13:93,241,274...93,798,221
Ensembl chr13:93,241,279...93,798,237
JBrowse link
G Spin1 spindlin 1 ISO RGD PMID:24035451 RGD:9479148 NCBI chr17:14,207,384...14,257,330
Ensembl chr17:14,207,384...14,257,190
JBrowse link
G Ssrp1 structure specific recognition protein 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chr 3:90,531,024...90,541,132
Ensembl chr 3:90,530,829...90,541,129
JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:23288364 RGD:9068945 NCBI chr15:27,341,196...27,378,314
Ensembl chr15:27,341,196...27,378,314
JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:17,093,059...17,105,942
Ensembl chr  X:17,092,986...17,105,942
JBrowse link
G Suv39h1-ps1 SUV39H1 histone lysine methyltransferase, pseudogene 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:146,828,818...146,831,485 JBrowse link
G Suv39h2 SUV39H2 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:79,665,467...79,684,492
Ensembl chr17:79,665,376...79,684,492
JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr10:65,464,948...65,510,846
Ensembl chr10:65,464,969...65,510,846
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074, RGD:9479075 NCBI chr  X:70,680,901...70,756,535
Ensembl chr  X:70,680,906...70,756,735
JBrowse link
G Tdrd3 tudor domain containing 3 ISO RGD PMID:24035451 PMID:23211769 RGD:9479148, RGD:9479163 NCBI chr15:69,748,754...69,911,605
Ensembl chr15:69,749,217...69,884,656
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 3:128,620,320...128,724,716
Ensembl chr 3:128,620,322...128,696,747
JBrowse link
G Trim24 tripartite motif-containing 24 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 4:67,534,240...67,659,014
Ensembl chr 4:67,534,335...67,684,226
JBrowse link
G Trim33 tripartite motif-containing 33 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074, RGD:9479075 NCBI chr 2:193,495,743...193,588,595
Ensembl chr 2:193,500,755...193,581,156
JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 ISO RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 9:1,220,162...1,241,792
Ensembl chr 9:1,222,063...1,241,792
JBrowse link
G Usp12 ubiquitin specific peptidase 12 ISO RGD PMID:24647359 RGD:9479061 NCBI chr12:13,423,625...13,477,547
Ensembl chr12:13,422,427...13,477,547
JBrowse link
G Usp16 ubiquitin specific peptidase 16 ISO RGD PMID:24647359 RGD:9479061 NCBI chr11:40,166,651...40,196,792
Ensembl chr11:40,167,692...40,196,823
JBrowse link
G Usp21 ubiquitin specific peptidase 21 ISO RGD PMID:24647359 RGD:9479061 NCBI chr13:86,235,122...86,241,663
Ensembl chr13:86,235,081...86,241,714
JBrowse link
G Usp22 ubiquitin specific peptidase 22 ISO RGD PMID:24647359 RGD:9479061 NCBI chr10:46,328,092...46,354,939
Ensembl chr10:46,328,092...46,371,723
JBrowse link
G Usp3 ubiquitin specific peptidase 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 8:75,973,278...76,049,151
Ensembl chr 8:75,974,615...76,049,153
JBrowse link
G Usp44 ubiquitin specific peptidase 44 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 7:30,251,142...30,301,185
Ensembl chr 7:30,251,205...30,297,906
JBrowse link
G Uty ubiquitously transcribed tetratricopeptide repeat containing, Y-linked ISO RGD PMID:22663077 PMID:23200123 RGD:9479053, RGD:7242632 NCBI chr  Y:1,018,111...1,178,493
Ensembl chr  Y:1,010,273...1,178,355
JBrowse link
G Wdr5 WD repeat domain 5 ISO RGD PMID:22663077 PMID:23642229 RGD:9479053, RGD:9479074 NCBI chr 3:31,233,048...31,254,730
Ensembl chr 3:31,235,222...31,254,727
JBrowse link
G Wdr82 WD repeat domain 82 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 8:115,693,297...115,713,262
Ensembl chr 8:115,693,315...115,713,242
JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta ISO RGD PMID:23642229 RGD:9479074 NCBI chr 7:69,826,404...69,848,702
Ensembl chr 7:69,826,404...69,849,007
JBrowse link
INO80 family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:16,776,664...16,779,634
Ensembl chr12:16,776,661...16,780,242
JBrowse link
G Actl6a actin-like 6A ISO RGD PMID:21502417 RGD:9495926 NCBI chr 2:117,413,206...117,436,758
Ensembl chr 2:117,418,601...117,436,754
JBrowse link
G Actr5 actin related protein 5 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:167,702,299...167,715,736
Ensembl chr 3:167,702,482...167,715,730
JBrowse link
G Actr6 actin related protein 6 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 7:26,037,574...26,058,362
Ensembl chr 7:26,037,574...26,060,604
JBrowse link
G Actr8 actin related protein 8 ISO RGD PMID:21502417 RGD:9495926 NCBI chr16:5,170,649...5,192,883
Ensembl chr16:5,167,237...5,186,180
JBrowse link
G Brd8 bromodomain containing 8 ISO RGD PMID:21502417 RGD:9495926 NCBI chr18:26,455,824...26,504,106
Ensembl chr18:26,455,512...26,504,006
JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 5:136,380,211...136,388,229
Ensembl chr 5:136,380,216...136,388,219
JBrowse link
G Ep400 E1A binding protein p400 ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:51,551,665...51,658,635
Ensembl chr12:51,551,695...51,658,634
JBrowse link
G Epc1 enhancer of polycomb 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr17:59,198,513...59,289,535
Ensembl chr17:59,197,677...59,289,519
JBrowse link
G Epc2 enhancer of polycomb 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:54,276,187...54,376,373
Ensembl chr 3:54,276,239...54,376,916
JBrowse link
G Ing3 inhibitor of growth family, member 3 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 4:51,439,218...51,469,502
Ensembl chr 4:51,443,763...51,470,951
JBrowse link
G Ino80 INO80 complex ATPase subunit ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:126,822,280...126,919,532
Ensembl chr 3:126,822,280...126,919,532
JBrowse link
G Ino80b INO80 complex subunit B ISO RGD PMID:21502417 RGD:9495926 NCBI chr 4:117,185,427...117,188,930
Ensembl chr 4:117,185,620...117,189,168
JBrowse link
G Ino80c INO80 complex subunit C ISO RGD PMID:21502417 RGD:9495926 NCBI chr18:15,653,508...15,752,455
Ensembl chr18:15,653,511...15,668,144
JBrowse link
G Ino80d INO80 complex subunit D ISO RGD PMID:21502417 RGD:9495926 NCBI chr 9:71,940,941...72,007,879
Ensembl chr 9:71,951,031...72,040,232
JBrowse link
G Ino80e INO80 complex subunit E ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:190,891,315...190,902,902
Ensembl chr 1:190,891,936...190,902,541
JBrowse link
G Kat5 lysine acetyltransferase 5 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:212,325,089...212,332,640
Ensembl chr 1:212,325,090...212,332,587
JBrowse link
G Mcrs1 microspherule protein 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 7:132,262,719...132,271,533
Ensembl chr 7:132,262,722...132,271,533
JBrowse link
G Meaf6 MYST/Esa1-associated factor 6 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 5:142,628,281...142,653,076
Ensembl chr 5:142,628,968...142,656,293
JBrowse link
G Morf4l1 mortality factor 4 like 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 8:99,522,801...99,544,432
Ensembl chr 8:99,500,898...99,544,331
JBrowse link
G Morf4l2 mortality factor 4 like 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chr  X:104,874,850...104,885,946
Ensembl chr  X:104,852,693...104,892,855
JBrowse link
G Mrgbp MRG domain binding protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:188,074,695...188,078,162
Ensembl chr 3:188,074,709...188,078,153
JBrowse link
G Nfrkb nuclear factor related to kappa B binding protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr 8:38,089,574...38,121,506
Ensembl chr 8:38,089,999...38,121,501
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 4:122,489,754...122,524,666
Ensembl chr 4:122,489,680...122,524,665
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:105,038,487...105,051,851
Ensembl chr 1:105,038,174...105,051,720
JBrowse link
G Srcap Snf2-related CREBBP activator protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:191,554,043...191,607,096
Ensembl chr 1:191,554,043...191,604,265
JBrowse link
G Tfpt TCF3 fusion partner ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:74,502,994...74,512,766
Ensembl chr 1:74,502,994...74,513,370
JBrowse link
G Trrap transformation/transcription domain-associated protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:14,851,758...14,941,444
Ensembl chr12:14,851,758...14,941,407
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 ISO RGD PMID:21502417 RGD:9495926 NCBI chr13:58,070,947...58,106,825
Ensembl chr13:58,042,029...58,107,441
JBrowse link
G Vps72 vacuolar protein sorting 72 homolog ISO RGD PMID:21502417 RGD:9495926 NCBI chr 2:185,367,329...185,379,199
Ensembl chr 2:185,367,623...185,379,191
JBrowse link
G Yeats4 YEATS domain containing 4 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 7:54,744,220...54,751,361
Ensembl chr 7:54,744,221...54,751,361
JBrowse link
G Yy1 YY1 transcription factor ISO RGD PMID:21502417 RGD:9495926 NCBI chr 6:133,471,615...133,500,875
Ensembl chr 6:133,471,562...133,497,257
JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:25,323,292...25,329,566
Ensembl chr12:25,323,114...25,329,563
JBrowse link
ISWI family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1a bromodomain adjacent to zinc finger domain, 1A ISO RGD PMID:21358755 RGD:9495920 NCBI chr 6:78,124,872...78,247,672
Ensembl chr 6:78,124,872...78,247,648
JBrowse link
G Baz1b bromodomain adjacent to zinc finger domain, 1B ISO RGD PMID:21358755 RGD:9495920 NCBI chr12:27,068,541...27,126,511
Ensembl chr12:27,068,541...27,126,511
JBrowse link
G Bptf bromodomain PHD finger transcription factor ISO RGD PMID:21358755 RGD:9495920 NCBI chr10:92,480,007...92,582,485
Ensembl chr10:92,480,007...92,582,413
JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 ISO RGD PMID:21358755 RGD:9495920 NCBI chr 7:106,901,841...106,905,441 JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit ISO RGD PMID:21358755 RGD:9495920 NCBI chr 5:80,989,508...80,992,742
Ensembl chr 5:80,989,511...80,992,742
Ensembl chr 7:80,989,511...80,992,742
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:21358755 RGD:9495920 NCBI chr 5:146,940,207...146,959,501
Ensembl chr 5:146,922,611...146,959,501
JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:21358755 RGD:9495920 NCBI chr  X:35,544,873...35,563,030
Ensembl chr  X:35,544,873...35,563,030
JBrowse link
G Smarca1 SNF2 related chromatin remodeling ATPase 1 ISO RGD PMID:21358755 RGD:9495920 NCBI chr  X:131,858,148...131,944,639
Ensembl chr  X:131,859,088...131,944,282
JBrowse link
G Smarca5 SNF2 related chromatin remodeling ATPase 5 ISO RGD PMID:21358755 RGD:9495920 NCBI chr19:44,172,465...44,208,967
Ensembl chr19:44,175,733...44,208,957
JBrowse link
SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta ISO RGD PMID:21358755 RGD:9495920 NCBI chr12:16,776,664...16,779,634
Ensembl chr12:16,776,661...16,780,242
JBrowse link
G Actl6a actin-like 6A ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 2:117,413,206...117,436,758
Ensembl chr 2:117,418,601...117,436,754
JBrowse link
G Actl6b actin-like 6B ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr12:24,761,660...24,778,193
Ensembl chr12:24,761,693...24,778,151
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 5:151,192,014...151,269,291
Ensembl chr 5:151,192,014...151,265,386
JBrowse link
G Arid1b AT-rich interaction domain 1B ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 1:47,973,199...48,328,793
Ensembl chr 1:47,973,997...48,328,793
JBrowse link
G Arid2 AT-rich interaction domain 2 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 7:129,326,371...129,443,813
Ensembl chr 7:129,324,137...129,443,187
JBrowse link
G Brd7 bromodomain containing 7 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr19:34,882,238...34,910,944
Ensembl chr19:34,882,304...34,910,944
JBrowse link
G Brd9 bromodomain containing 9 ISO RGD PMID:21358755 RGD:9495920 NCBI chr 1:31,158,546...31,185,812
Ensembl chr 1:31,158,546...31,186,125
JBrowse link
G Dpf1 double PHD fingers 1 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 1:93,729,683...93,743,425
Ensembl chr 1:93,726,970...93,743,425
JBrowse link
G Dpf2 double PHD fingers 2 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 1:212,612,986...212,628,376
Ensembl chr 1:212,612,986...212,628,289
JBrowse link
G Dpf3 double PHD fingers 3 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 6:108,577,792...108,856,724
Ensembl chr 6:108,577,183...108,856,798
JBrowse link
G Pbrm1 polybromo 1 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr16:6,219,933...6,319,336
Ensembl chr16:6,219,917...6,319,336
JBrowse link
G Phf10 PHD finger protein 10 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 1:64,625,373...64,642,110
Ensembl chr 1:64,624,465...64,642,049
JBrowse link
G Smarca2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 1:233,617,277...233,784,908
Ensembl chr 1:233,617,366...233,784,869
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:28,443,810...28,535,070
JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr20:12,740,105...12,763,054
Ensembl chr20:12,740,943...12,763,055
JBrowse link
G Smarcc1 SWI/SNF related BAF chromatin remodeling complex subunit C1 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 8:118,986,917...119,093,161
Ensembl chr 8:118,989,516...119,093,152
JBrowse link
G Smarcc2 SWI/SNF related BAF chromatin remodeling complex subunit C2 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 7:1,466,223...1,494,627
Ensembl chr 7:1,466,454...1,494,626
JBrowse link
G Smarcd1 SWI/SNF related BAF chromatin remodeling complex subunit D1 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 7:132,708,627...132,719,167
Ensembl chr 7:132,708,432...132,719,167
JBrowse link
G Smarcd2 SWI/SNF related BAF chromatin remodeling complex subunit D2 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr10:91,693,542...91,702,408
Ensembl chr10:91,693,542...91,702,522
JBrowse link
G Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 4:11,441,142...11,472,781
Ensembl chr 4:11,441,157...11,472,781
JBrowse link
G Smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr10:84,655,468...84,678,259
Ensembl chr10:84,655,468...84,676,185
JBrowse link

Pathway Gene Annotations

References Associated with the chromatin modification/remodeling pathway:

Ontology Path Diagram:

paths to the root
paths to the root

Import into Pathway Studio: