Cbx4 (chromobox 4) - Rat Genome Database

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Gene: Cbx4 (chromobox 4) Rattus norvegicus
Analyze
Symbol: Cbx4
Name: chromobox 4
RGD ID: 1587243
Description: Predicted to enable several functions, including SUMO binding activity; SUMO ligase activity; and nucleic acid binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and protein sumoylation. Predicted to be located in nuclear body. Predicted to be part of PRC1 complex. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human CBX4 (chromobox 4); PARTICIPATES IN histone modification pathway; INTERACTS WITH amphetamine; endosulfan; orphenadrine.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromobox homolog 4; chromobox homolog 4 (Drosophila Pc class); chromobox homolog 4 (Pc class homolog, Drosophila); E3 SUMO-protein ligase CBX4; LOC501403; similar to Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2) (MPc2)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210104,337,140 - 104,343,210 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10104,336,876 - 104,356,706 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.010108,190,947 - 108,196,455 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10108,190,995 - 108,196,217 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010107,803,761 - 107,809,306 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10102,881,315 - 102,890,183 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
butan-1-ol  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
depsipeptide  (ISO)
diarsenic trioxide  (ISO)
diethyl maleate  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenpyroximate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
leflunomide  (ISO)
Licochalcone B  (ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
orphenadrine  (EXP)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tebufenpyrad  (ISO)
tetrachloromethane  (EXP)
thifluzamide  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
tungsten  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
XL147  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. PRC1 complex diversity: where is it taking us? Gil J and O'Loghlen A, Trends Cell Biol. 2014 Jul 22. pii: S0962-8924(14)00102-0. doi: 10.1016/j.tcb.2014.06.005.
3. Polycomb chromobox 4 enhances migration and pulmonary metastasis of hepatocellular carcinoma cell line MHCC97L. Mei Z, etal., Sci China Life Sci. 2014 Jun;57(6):610-7. doi: 10.1007/s11427-014-4663-9. Epub 2014 May 16.
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
8. Chromobox homolog 4 is correlated with prognosis and tumor cell growth in hepatocellular carcinoma. Wang B, etal., Ann Surg Oncol. 2013 Dec;20 Suppl 3:S684-92. doi: 10.1245/s10434-013-3171-7. Epub 2013 Aug 14.
Additional References at PubMed
PMID:9367786   PMID:12167701   PMID:12679040   PMID:16537902   PMID:17087506   PMID:17392792   PMID:17439403   PMID:18555800   PMID:18567530   PMID:19636380   PMID:20098713   PMID:20176810  
PMID:20417598   PMID:21282530   PMID:22082260   PMID:35880565  


Genomics

Comparative Map Data
Cbx4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210104,337,140 - 104,343,210 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10104,336,876 - 104,356,706 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.010108,190,947 - 108,196,455 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10108,190,995 - 108,196,217 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010107,803,761 - 107,809,306 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10102,881,315 - 102,890,183 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
CBX4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381779,833,156 - 79,839,440 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1779,833,156 - 79,839,440 (-)EnsemblGRCh38hg38GRCh38
GRCh371777,806,955 - 77,813,239 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361775,421,550 - 75,427,808 (-)NCBINCBI36Build 36hg18NCBI36
Build 341775,421,550 - 75,427,808NCBI
Celera1774,433,438 - 74,439,695 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1773,247,786 - 73,258,221 (-)NCBIHuRef
CHM1_11777,893,186 - 77,899,450 (-)NCBICHM1_1
T2T-CHM13v2.01780,730,965 - 80,737,249 (-)NCBIT2T-CHM13v2.0
Cbx4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911118,968,397 - 118,977,063 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11118,968,399 - 118,977,047 (-)EnsemblGRCm39 Ensembl
GRCm3811119,077,571 - 119,086,237 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11119,077,573 - 119,086,221 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711118,938,885 - 118,947,551 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611118,896,245 - 118,902,231 (-)NCBIMGSCv36mm8
Celera11130,821,957 - 130,830,758 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.34NCBI
Cbx4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555062,998,237 - 3,002,788 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555062,998,241 - 3,002,788 (+)NCBIChiLan1.0ChiLan1.0
CBX4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11779,450,190 - 79,458,866 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1779,449,919 - 79,458,866 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01773,913,264 - 73,919,540 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CBX4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.191,799,847 - 1,807,500 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl91,802,047 - 1,807,690 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha92,441,071 - 2,447,341 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.092,433,610 - 2,439,872 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl92,433,687 - 2,440,062 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.192,456,843 - 2,463,104 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.092,582,319 - 2,588,578 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.092,663,556 - 2,669,818 (+)NCBIUU_Cfam_GSD_1.0
Cbx4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056022,461,814 - 2,468,024 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365943,943,924 - 3,950,196 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365943,943,933 - 3,950,124 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBX4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl122,521,027 - 2,527,241 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1122,520,913 - 2,527,245 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2122,591,117 - 2,597,525 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CBX4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11671,795,919 - 71,802,184 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1671,795,862 - 71,802,051 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607743,093,037 - 43,099,314 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cbx4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248019,003,059 - 9,008,203 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248019,002,290 - 9,008,305 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cbx4
17 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:66
Interacting mature miRNAs:75
Transcripts:ENSRNOT00000075440
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1558652Bw57Body weight QTL 574.20.0008body mass (VT:0001259)body weight (CMO:0000012)1090910316107211142Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)1096703043107057807Rat
631539Oia6Oil induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1097010147104670812Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 18 21 5 19 5 64 13 30 10
Low 25 36 36 36 8 11 10 22 11 1 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000075440   ⟹   ENSRNOP00000066624
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl10108,190,995 - 108,196,217 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115792   ⟹   ENSRNOP00000091742
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10104,336,876 - 104,356,706 (-)Ensembl
RefSeq Acc Id: XM_008768485   ⟹   XP_008766707
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210104,337,140 - 104,343,210 (-)NCBI
Rnor_6.010108,190,947 - 108,196,455 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008766707 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM06774 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008766707   ⟸   XM_008768485
- UniProtKB: A0A8I6ACN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000066624   ⟸   ENSRNOT00000075440
RefSeq Acc Id: ENSRNOP00000091742   ⟸   ENSRNOT00000115792
Protein Domains
Chromo

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RAR7-F1-model_v2 AlphaFold M0RAR7 1-481 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587243 AgrOrtholog
BioCyc Gene G2FUF-22506 BioCyc
Ensembl Genes ENSRNOG00000046207 Ensembl
  ENSRNOG00000063043 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000091742 ENTREZGENE
  ENSRNOP00000091742.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000115792 ENTREZGENE
  ENSRNOT00000115792.1 UniProtKB/TrEMBL
InterPro CBX4 UniProtKB/TrEMBL
  CBX7_C UniProtKB/TrEMBL
  Chromo-like_dom_sf UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/TrEMBL
  Chromo_dom_subgr UniProtKB/TrEMBL
  Chromo_domain UniProtKB/TrEMBL
  Chromodomain_CS UniProtKB/TrEMBL
NCBI Gene 501403 ENTREZGENE
PANTHER PTHR46727 UniProtKB/TrEMBL
Pfam CBX7_C UniProtKB/TrEMBL
  Chromo UniProtKB/TrEMBL
PhenoGen Cbx4 PhenoGen
PRINTS CHROMODOMAIN UniProtKB/TrEMBL
PROSITE CHROMO_1 UniProtKB/TrEMBL
  CHROMO_2 UniProtKB/TrEMBL
SMART CHROMO UniProtKB/TrEMBL
Superfamily-SCOP SSF54160 UniProtKB/TrEMBL
UniProt A0A8I6ACN6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Cbx4  chromobox 4  Cbx4  chromobox 4  Data Merged 737654 PROVISIONAL
2021-08-09 Cbx4  chromobox 4      Symbol and Name status set to provisional 45752 PROVISIONAL
2015-12-02 Cbx4  chromobox 4  Cbx4  chromobox homolog 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-29 Cbx4  chromobox homolog 4  Cbx4  chromobox homolog 4 (Pc class homolog, Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Cbx4  chromobox homolog 4 (Pc class homolog, Drosophila)  Cbx4  chromobox homolog 4 (Drosophila Pc class)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Cbx4  chromobox homolog 4 (Drosophila Pc class)  LOC501403  similar to Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2) (MPc2)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC501403  similar to Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2) (MPc2)      Symbol and Name status set to provisional 70820 PROVISIONAL