Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | medulloblastoma | | ISO | BRD3 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:24231268 | |
|
Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | medulloblastoma | | ISO | BRD3 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:24231268 | |
|
|
|
|
|
|
|
|
# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
5. | The bromodomain: From epigenome reader to druggable target. | Sanchez R, etal., Biochim Biophys Acta. 2014 Aug;1839(8):676-685. doi: 10.1016/j.bbagrm.2014.03.011. Epub 2014 Mar 28. |
Brd3 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
BRD3 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Brd3 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Brd3 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
BRD3 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
BRD3 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Brd3 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
BRD3 (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Brd3 (Heterocephalus glaber - naked mole-rat) |
|
.
Variants in Brd3
153 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D3Mgh16 |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
RH133905 |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
RH136842 |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
UniSTS:234347 |
|
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 34 | 51 | 35 | 19 | 35 | 1 | 4 | 72 | 30 | 41 | 11 | 1 |
Low | 9 | 6 | 6 | 6 | 7 | 7 | 2 | 5 | 7 | ||||
Below cutoff |
RefSeq Transcripts | NM_001108575 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006233825 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006233826 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006233830 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017591876 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017591877 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017591878 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039105362 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039105364 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284058 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284059 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284060 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284061 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063284062 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC168949 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH474001 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000003 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000065867 ⟹ ENSRNOP00000059977 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000084491 ⟹ ENSRNOP00000073373 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | NM_001108575 ⟹ NP_001102045 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_006233825 ⟹ XP_006233887 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
|
||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_006233826 ⟹ XP_006233888 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
|
||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_006233830 ⟹ XP_006233892 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
|
||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_017591876 ⟹ XP_017447365 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_017591877 ⟹ XP_017447366 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_039105362 ⟹ XP_038961290 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039105364 ⟹ XP_038961292 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_063284058 ⟹ XP_063140128 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063284059 ⟹ XP_063140129 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063284060 ⟹ XP_063140130 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063284061 ⟹ XP_063140131 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063284062 ⟹ XP_063140132 | ||||||||
Type: | CODING | ||||||||
Position: |
|
Protein RefSeqs | NP_001102045 | (Get FASTA) | NCBI Sequence Viewer |
XP_006233887 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006233888 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006233892 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017447365 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017447366 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038961290 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038961292 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063140128 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063140129 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063140130 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063140131 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063140132 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI68949 | (Get FASTA) | NCBI Sequence Viewer |
EDL93434 | (Get FASTA) | NCBI Sequence Viewer | |
EDL93435 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000059977 | ||
ENSRNOP00000059977.2 | |||
ENSRNOP00000073373 | |||
ENSRNOP00000073373.1 |
RefSeq Acc Id: | NP_001102045 ⟸ NM_001108575 |
- UniProtKB: | D3ZWU1 (UniProtKB/TrEMBL), A6JTL2 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006233888 ⟸ XM_006233826 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B5DF71 (UniProtKB/TrEMBL), A0A0G2K5C4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006233892 ⟸ XM_006233830 |
- Peptide Label: | isoform X2 |
- UniProtKB: | D3ZWU1 (UniProtKB/TrEMBL), A6JTL2 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006233887 ⟸ XM_006233825 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B5DF71 (UniProtKB/TrEMBL), A0A0G2K5C4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017447365 ⟸ XM_017591876 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B5DF71 (UniProtKB/TrEMBL), A0A0G2K5C4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017447366 ⟸ XM_017591877 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B5DF71 (UniProtKB/TrEMBL), A0A0G2K5C4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000073373 ⟸ ENSRNOT00000084491 |
RefSeq Acc Id: | ENSRNOP00000059977 ⟸ ENSRNOT00000065867 |
RefSeq Acc Id: | XP_038961292 ⟸ XM_039105364 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B5DF71 (UniProtKB/TrEMBL), A0A0G2K5C4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038961290 ⟸ XM_039105362 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B5DF71 (UniProtKB/TrEMBL), A0A0G2K5C4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063140129 ⟸ XM_063284059 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_063140130 ⟸ XM_063284060 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_063140132 ⟸ XM_063284062 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_063140128 ⟸ XM_063284058 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_063140131 ⟸ XM_063284061 |
- Peptide Label: | isoform X2 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-B5DF71-F1-model_v2 | AlphaFold | B5DF71 | 1-742 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13691926 | ||||||||
Promoter ID: | EPDNEW_R2451 | ||||||||
Type: | initiation region | ||||||||
Name: | Brd3_1 | ||||||||
Description: | bromodomain containing 3 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | RGD:1308925 | AgrOrtholog |
BioCyc Gene | G2FUF-50299 | BioCyc |
Ensembl Genes | ENSRNOG00000007681 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000065867 | ENTREZGENE |
ENSRNOT00000065867.4 | UniProtKB/TrEMBL | |
ENSRNOT00000084491.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.1270.220 | UniProtKB/TrEMBL |
1.20.920.10 | UniProtKB/TrEMBL | |
InterPro | Bromo_Brdt_I | UniProtKB/TrEMBL |
Bromo_Brdt_II | UniProtKB/TrEMBL | |
Bromodomain | UniProtKB/TrEMBL | |
Bromodomain-like_sf | UniProtKB/TrEMBL | |
Bromodomain_CS | UniProtKB/TrEMBL | |
NET_dom | UniProtKB/TrEMBL | |
NET_sf | UniProtKB/TrEMBL | |
KEGG Report | rno:362092 | UniProtKB/TrEMBL |
NCBI Gene | 362092 | ENTREZGENE |
PANTHER | BROMODOMAIN-CONTAINING PROTEIN 3 | UniProtKB/TrEMBL |
FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS | UniProtKB/TrEMBL | |
Pfam | BET | UniProtKB/TrEMBL |
Bromodomain | UniProtKB/TrEMBL | |
PhenoGen | Brd3 | PhenoGen |
PRINTS | BROMODOMAIN | UniProtKB/TrEMBL |
PROSITE | BROMODOMAIN_1 | UniProtKB/TrEMBL |
BROMODOMAIN_2 | UniProtKB/TrEMBL | |
NET | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000007681 | RatGTEx |
SMART | BROMO | UniProtKB/TrEMBL |
Superfamily-SCOP | Bromodomain | UniProtKB/TrEMBL |
UniProt | A0A0G2K5C4 | ENTREZGENE, UniProtKB/TrEMBL |
A6JTL2 | ENTREZGENE, UniProtKB/TrEMBL | |
B5DF71 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZWU1 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2008-04-30 | Brd3 | bromodomain containing 3 | Brd3_predicted | bromodomain containing 3 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Brd3_predicted | bromodomain containing 3 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |