Brd3 (bromodomain containing 3) - Rat Genome Database

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Gene: Brd3 (bromodomain containing 3) Rattus norvegicus
Analyze
Symbol: Brd3
Name: bromodomain containing 3
RGD ID: 1308925
Description: Predicted to enable chromatin binding activity and lysine-acetylated histone binding activity. Predicted to be involved in chromatin remodeling and regulation of transcription by RNA polymerase II. Predicted to be active in chromatin and nucleus. Orthologous to human BRD3 (bromodomain containing 3); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: bromodomain-containing protein 3; LOC362092
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2310,773,163 - 10,829,675 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,775,272 - 10,829,577 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx313,842,647 - 13,863,056 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0322,428,063 - 22,448,472 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0320,683,348 - 20,703,636 (-)NCBIRnor_WKY
Rnor_6.035,995,204 - 6,054,467 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl35,997,315 - 6,054,483 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0311,356,155 - 11,415,329 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.436,369,903 - 6,390,116 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.136,347,707 - 6,425,179 (-)NCBI
Celera35,569,850 - 5,590,130 (-)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IBA)
nucleus  (IBA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. The bromodomain: From epigenome reader to druggable target. Sanchez R, etal., Biochim Biophys Acta. 2014 Aug;1839(8):676-685. doi: 10.1016/j.bbagrm.2014.03.011. Epub 2014 Mar 28.
Additional References at PubMed
PMID:12477932   PMID:18406326   PMID:22464331   PMID:27105114  


Genomics

Comparative Map Data
Brd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2310,773,163 - 10,829,675 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,775,272 - 10,829,577 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx313,842,647 - 13,863,056 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0322,428,063 - 22,448,472 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0320,683,348 - 20,703,636 (-)NCBIRnor_WKY
Rnor_6.035,995,204 - 6,054,467 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl35,997,315 - 6,054,483 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0311,356,155 - 11,415,329 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.436,369,903 - 6,390,116 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.136,347,707 - 6,425,179 (-)NCBI
Celera35,569,850 - 5,590,130 (-)NCBICelera
Cytogenetic Map3p12NCBI
BRD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389134,030,305 - 134,068,548 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9134,030,305 - 134,068,535 (-)EnsemblGRCh38hg38GRCh38
GRCh379136,895,427 - 136,933,148 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,887,784 - 135,922,913 (-)NCBINCBI36Build 36hg18NCBI36
Build 349133,927,516 - 133,962,646NCBI
Celera9107,443,656 - 107,481,364 (-)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9106,393,244 - 106,416,418 (-)NCBIHuRef
CHM1_19137,043,869 - 137,081,779 (-)NCBICHM1_1
T2T-CHM13v2.09146,246,241 - 146,283,964 (-)NCBIT2T-CHM13v2.0
Brd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39227,335,588 - 27,397,669 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl227,335,591 - 27,397,674 (-)EnsemblGRCm39 Ensembl
GRCm38227,445,576 - 27,507,657 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl227,445,579 - 27,507,662 (-)EnsemblGRCm38mm10GRCm38
MGSCv37227,301,101 - 27,331,193 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36227,269,799 - 27,309,212 (-)NCBIMGSCv36mm8
Celera227,148,111 - 27,178,261 (-)NCBICelera
Cytogenetic Map2A3NCBI
Brd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555133,145,288 - 3,174,370 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555133,145,267 - 3,164,791 (-)NCBIChiLan1.0ChiLan1.0
BRD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19133,759,096 - 133,782,419 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9133,759,111 - 133,782,419 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09105,151,354 - 105,189,754 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
BRD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1950,290,488 - 50,322,243 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl950,288,240 - 50,322,127 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha949,570,495 - 49,602,820 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0951,164,163 - 51,196,161 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl951,161,924 - 51,196,086 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,925,110 - 49,957,260 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0950,268,030 - 50,300,071 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0950,346,115 - 50,377,911 (-)NCBIUU_Cfam_GSD_1.0
Brd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947200,351,873 - 200,381,780 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366692,993,187 - 3,021,200 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049366692,993,284 - 3,023,185 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1124,075,123 - 4,112,727 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl124,089,621 - 4,109,441 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666058981,257 - 1,019,790 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Brd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247602,221,472 - 2,247,388 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247602,220,019 - 2,247,322 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Brd3
153 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:129
Interacting mature miRNAs:140
Transcripts:ENSRNOT00000065867
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat

Markers in Region
D3Mgh16  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2310,778,704 - 10,778,823 (+)MAPPERmRatBN7.2
Rnor_6.036,000,748 - 6,000,866NCBIRnor6.0
Rnor_5.0311,361,699 - 11,361,817UniSTSRnor5.0
RGSC_v3.436,373,335 - 6,373,454RGDRGSC3.4
RGSC_v3.436,373,336 - 6,373,454UniSTSRGSC3.4
RGSC_v3.136,373,636 - 6,373,754RGD
Celera35,573,283 - 5,573,401UniSTS
RH 3.4 Map316.9UniSTS
RH 3.4 Map316.9RGD
Cytogenetic Map3p12UniSTS
RH133905  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2310,775,425 - 10,775,621 (+)MAPPERmRatBN7.2
Rnor_6.035,997,469 - 5,997,664NCBIRnor6.0
Rnor_5.0311,358,420 - 11,358,615UniSTSRnor5.0
RGSC_v3.436,370,057 - 6,370,252UniSTSRGSC3.4
Celera35,570,004 - 5,570,199UniSTS
RH 3.4 Map333.2UniSTS
Cytogenetic Map3p12UniSTS
RH136842  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2310,775,998 - 10,776,801 (+)MAPPERmRatBN7.2
Rnor_6.035,998,042 - 5,998,844NCBIRnor6.0
Rnor_5.0311,358,993 - 11,359,795UniSTSRnor5.0
RGSC_v3.436,370,630 - 6,371,432UniSTSRGSC3.4
Celera35,570,577 - 5,571,379UniSTS
RH 3.4 Map330.0UniSTS
Cytogenetic Map3p12UniSTS
UniSTS:234347  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2310,791,891 - 10,792,105 (+)MAPPERmRatBN7.2
Rnor_6.036,013,934 - 6,014,147NCBIRnor6.0
Rnor_5.0311,374,885 - 11,375,098UniSTSRnor5.0
RGSC_v3.436,386,453 - 6,386,666UniSTSRGSC3.4
Celera35,586,468 - 5,586,681UniSTS
Cytogenetic Map3p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 51 35 19 35 1 4 72 30 41 11 1
Low 9 6 6 6 7 7 2 5 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000065867   ⟹   ENSRNOP00000059977
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl310,775,272 - 10,795,555 (-)Ensembl
Rnor_6.0 Ensembl35,997,315 - 6,017,597 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084491   ⟹   ENSRNOP00000073373
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl310,775,937 - 10,829,577 (-)Ensembl
Rnor_6.0 Ensembl35,997,872 - 6,054,483 (-)Ensembl
RefSeq Acc Id: NM_001108575   ⟹   NP_001102045
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,775,272 - 10,795,555 (-)NCBI
Rnor_6.035,997,315 - 6,017,597 (-)NCBI
Rnor_5.0311,356,155 - 11,415,329 (-)NCBI
RGSC_v3.436,369,903 - 6,390,116 (-)RGD
Celera35,569,850 - 5,590,130 (-)RGD
Sequence:
RefSeq Acc Id: XM_006233825   ⟹   XP_006233887
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,773,163 - 10,802,997 (-)NCBI
Rnor_6.035,995,204 - 6,025,001 (-)NCBI
Rnor_5.0311,356,155 - 11,415,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233826   ⟹   XP_006233888
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,773,163 - 10,829,675 (-)NCBI
Rnor_6.035,995,204 - 6,054,467 (-)NCBI
Rnor_5.0311,356,155 - 11,415,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233830   ⟹   XP_006233892
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,773,163 - 10,802,997 (-)NCBI
Rnor_6.035,995,204 - 6,025,001 (-)NCBI
Rnor_5.0311,356,155 - 11,415,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591876   ⟹   XP_017447365
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,773,163 - 10,802,783 (-)NCBI
Rnor_6.035,995,204 - 6,024,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591877   ⟹   XP_017447366
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,773,163 - 10,802,295 (-)NCBI
Rnor_6.035,995,204 - 6,024,401 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105362   ⟹   XP_038961290
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,773,163 - 10,792,420 (-)NCBI
RefSeq Acc Id: XM_039105364   ⟹   XP_038961292
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,773,163 - 10,802,783 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001102045   ⟸   NM_001108575
- UniProtKB: D3ZWU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233888   ⟸   XM_006233826
- Peptide Label: isoform X1
- UniProtKB: B5DF71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233892   ⟸   XM_006233830
- Peptide Label: isoform X2
- UniProtKB: D3ZWU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233887   ⟸   XM_006233825
- Peptide Label: isoform X1
- UniProtKB: B5DF71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447365   ⟸   XM_017591876
- Peptide Label: isoform X1
- UniProtKB: B5DF71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447366   ⟸   XM_017591877
- Peptide Label: isoform X1
- UniProtKB: B5DF71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073373   ⟸   ENSRNOT00000084491
RefSeq Acc Id: ENSRNOP00000059977   ⟸   ENSRNOT00000065867
RefSeq Acc Id: XP_038961292   ⟸   XM_039105364
- Peptide Label: isoform X1
- UniProtKB: B5DF71 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961290   ⟸   XM_039105362
- Peptide Label: isoform X1
- UniProtKB: B5DF71 (UniProtKB/TrEMBL)
Protein Domains
Bromo   NET

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DF71-F1-model_v2 AlphaFold B5DF71 1-742 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691926
Promoter ID:EPDNEW_R2451
Type:initiation region
Name:Brd3_1
Description:bromodomain containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.036,054,510 - 6,054,570EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308925 AgrOrtholog
BioCyc Gene G2FUF-50299 BioCyc
Ensembl Genes ENSRNOG00000007681 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000059977 ENTREZGENE
  ENSRNOP00000059977.2 UniProtKB/TrEMBL
  ENSRNOP00000073373 ENTREZGENE
  ENSRNOP00000073373.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065867 ENTREZGENE
  ENSRNOT00000065867.4 UniProtKB/TrEMBL
  ENSRNOT00000084491 ENTREZGENE
  ENSRNOT00000084491.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.220 UniProtKB/TrEMBL
  1.20.920.10 UniProtKB/TrEMBL
InterPro Bromo_Brdt_I UniProtKB/TrEMBL
  Bromo_Brdt_II UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  NET_dom UniProtKB/TrEMBL
  NET_sf UniProtKB/TrEMBL
KEGG Report rno:362092 UniProtKB/TrEMBL
NCBI Gene 362092 ENTREZGENE
Pfam BET UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
PhenoGen Brd3 PhenoGen
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  NET UniProtKB/TrEMBL
SMART BROMO UniProtKB/TrEMBL
Superfamily-SCOP Bromodomain UniProtKB/TrEMBL
UniProt B5DF71 ENTREZGENE, UniProtKB/TrEMBL
  D3ZWU1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Brd3  bromodomain containing 3   Brd3_predicted  bromodomain containing 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Brd3_predicted  bromodomain containing 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED