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Gene: LOC100911617 (protein arginine N-methyltransferase 6-like) Rattus norvegicus
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Symbol: LOC100911617
Name: protein arginine N-methyltransferase 6-like
Description: Orthologous to human PRMT6 (protein arginine methyltransferase 6); PARTICIPATES IN histone modification pathway.
Type: protein-coding
Orthologs:
No known orthologs. homologs ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Genome Annotation Status: not in current annotation release; Note: LOC100911617 appears to be a duplicate placement of Prmt6 (GeneID: 295384) on Rnor_6.0 that is not present on Rn_Celera (Annotation Release 105) and not supported by synteny in mouse and human. Additionally, gene neighbor LOC102552915 also appears to be duplicated as LOC102547648. BLASting LOC100911617 XM_008761447.1 and Prmt6 NM_001106466.1 against the rat genome shows best hits to NC_005101.4 on Rnor_6.0 at locations where LOC100911617 and Prmt6 are annotated and to AC_000070.1 on Rn_Celera only at location where Prmt6 is annotated (Annotation Release 105). 2-sequence BLAST of Prmt6 NM_001106466.1 against LOC100911617 XM_008761447.1 shows high sequence identity (100% coverage, 100% identity). 2-sequence BLAST of LOC100911617 underlying component AABR07012875.1 against Prmt6 underlying component AABR07012881.1 shows 99% sequence identity across ~34 kb. [26 Mar 2015]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02213,173,403 - 213,180,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02232,642,305 - 232,649,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map2 NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations
References - curated

Genomics

Position Markers
QTLs in Region (Rnor_6.0)

Expression


Sequence

Nucleotide Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on LOC100911617
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 6491483
Created: 2012-07-05
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.