Actb (actin, beta) - Rat Genome Database

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Gene: Actb (actin, beta) Rattus norvegicus
Analyze
Symbol: Actb
Name: actin, beta
RGD ID: 628837
Description: Enables protein kinase binding activity. Involved in several processes, including cellular response to electrical stimulus; regulation of cyclin-dependent protein serine/threonine kinase activity; and regulation of norepinephrine uptake. Located in several cellular components, including actin cytoskeleton; membrane raft; and postsynaptic density. Part of protein-containing complex. Used to study non-alcoholic fatty liver disease. Biomarker of temporal lobe epilepsy. Human ortholog(s) of this gene implicated in Baraitser-Winter syndrome. Orthologous to human ACTB (actin beta); PARTICIPATES IN auditory mechanotransduction pathway; INO80 family mediated chromatin remodeling pathway; mitochondria transport pathway; INTERACTS WITH (+)-catechin; (+)-epicatechin-3-O-gallate; (3,4-dihydroxyphenyl)acetic acid.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: actin, cytoplasmic 1; Actx; beta-actin; cytoplasmic beta-actin
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21211,663,112 - 11,666,697 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1211,663,109 - 11,672,877 (+)Ensembl
Rnor_6.01213,715,843 - 13,718,813 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,715,843 - 13,718,841 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,745,856 - 15,749,440 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,047,070 - 12,050,040 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11212,076,997 - 12,079,967 (+)NCBI
Celera1213,452,443 - 13,455,413 (+)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (EXP)
(+)-epicatechin-3-O-gallate  (EXP)
(+)-pilocarpine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(3,4-dihydroxyphenyl)acetic acid  (EXP)
(S)-amphetamine  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
2-amino-2-deoxy-D-galactopyranose  (EXP)
2-methylcholine  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-phenylprop-2-enal  (ISO)
4-hydroperoxycyclophosphamide  (ISO)
4-hydroxynon-2-enal  (ISO)
4-vinylcyclohexene dioxide  (ISO)
5-fluorouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
abamectin  (ISO)
acetamide  (EXP)
acetic acid  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (EXP)
alloxan  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
aristolochic acid  (ISO)
Aroclor 1254  (EXP,ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (ISO)
bathocuproine disulfonic acid  (ISO)
beauvericin  (ISO)
benzene  (EXP)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
bromobenzene  (EXP)
bromochloroacetic acid  (ISO)
bufalin  (ISO)
buspirone  (EXP)
butan-1-ol  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcidiol  (EXP)
calcitriol  (EXP)
calcium atom  (EXP)
calcium(0)  (EXP)
carbon disulfide  (EXP)
carbon nanotube  (ISO)
ceftriaxone  (EXP)
chloromethylisothiazolinone  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (EXP,ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
DDT  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
dopamine  (ISO)
Doramectin  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
endosulfan  (EXP,ISO)
ethanol  (EXP,ISO)
fenbuconazole  (ISO)
fipronil  (EXP)
flutamide  (EXP)
furan  (EXP)
gamma-hexachlorocyclohexane  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glucose  (ISO)
glyphosate  (ISO)
hyaluronic acid  (EXP)
hydrogen peroxide  (EXP,ISO)
indirubin-3'-monoxime  (ISO)
iodide salt  (EXP)
ionomycin  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
latrunculin A  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lead(II) chloride  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (EXP)
lithium atom  (EXP)
lithium hydride  (EXP)
lovastatin  (ISO)
manganese(II) chloride  (ISO)
mercury atom  (EXP)
mercury dichloride  (ISO)
mercury(0)  (EXP)
methamphetamine  (EXP)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (EXP,ISO)
mifepristone  (ISO)
Monobutylphthalate  (ISO)
monocrotaline  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosomorpholine  (EXP)
naphthalene  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nicotine  (ISO)
nitric oxide  (ISO)
nitroglycerin  (EXP)
Nonylphenol  (EXP)
ochratoxin A  (ISO)
ozone  (EXP,ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
paraoxon  (ISO)
paraquat  (ISO)
perfluorobutyric acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenethyl isothiocyanate  (ISO)
PhIP  (EXP)
phlorizin  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (EXP,ISO)
resveratrol  (EXP)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
simvastatin  (EXP)
sirolimus  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP)
sodium fluoride  (ISO)
sulforaphane  (ISO)
T-2 toxin  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP,ISO)
titanium dioxide  (ISO)
triadimefon  (ISO)
tributylstannane  (ISO)
trichloroethene  (ISO)
triphenylstannane  (ISO)
Triptolide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
trovafloxacin  (EXP)
tunicamycin  (ISO)
uranium atom  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
warfarin  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
1. Bonham GS Vital Health Stat 10 1978 Nov;(124):i-iv, 1-57.
2. Bredow S, etal., Neuroimmunomodulation. 1997 Mar-Apr;4(2):84-90.
3. Brown D, etal., Can J Physiol Pharmacol. 2006 Aug-Sep;84(8-9):867-75.
4. Chen YM, etal., Biol Reprod. 2003 Aug;69(2):656-72. Epub 2003 Apr 16.
5. Eom T, etal., J Neurosci 2003 Nov 12;23(32):10433-44.
6. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
8. Humbert S, etal., J Cell Sci. 2000 Mar;113 ( Pt 6):975-83.
9. Jeannotte AM and Sidhu A, J Neurochem. 2008 Jun;105(5):1668-82. doi: 10.1111/j.1471-4159.2008.05258.x. Epub 2008 Mar 3.
10. Kallman J, etal., Ideggyogy Sz. 2012 Nov 30;65(11-12):394-400.
11. Lardizabal MN, etal., PLoS One. 2012;7(5):e36323. doi: 10.1371/journal.pone.0036323. Epub 2012 May 1.
12. Ledesma MD, etal., Brain Res. 2003 Oct 10;987(1):107-16.
13. Luk JM, etal., J Cell Physiol. 2006 Dec;209(3):755-66.
14. Lund LM, etal., Exp Neurol 2002 Dec;178(2):306-12.
15. Mendez L, etal., J Nutr Biochem. 2014 Dec;25(12):1243-53. doi: 10.1016/j.jnutbio.2014.06.014. Epub 2014 Sep 6.
16. MGD data from the GO Consortium
17. Noda Y, etal., Biochem Biophys Res Commun. 2005 May 20;330(4):1041-7.
18. Nudel U, etal., Nucleic Acids Res 1983 Mar 25;11(6):1759-71.
19. Ogneva IV, etal., PLoS One. 2014 Apr 29;9(4):e96395. doi: 10.1371/journal.pone.0096395. eCollection 2014.
20. OMIM Disease Annotation Pipeline
21. Park F, etal., Am J Physiol 1997 Nov;273(5 Pt 2):R1742-8.
22. Perike S, etal., Exp Cell Res. 2014 May 15;324(1):13-29. doi: 10.1016/j.yexcr.2014.03.005. Epub 2014 Mar 19.
23. Pipeline to import KEGG annotations from KEGG into RGD
24. RGD automated data pipeline
25. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
26. RGD automated import pipeline for gene-chemical interactions
27. Rocha-Martins M, etal., PLoS One. 2012;7(8):e43028. doi: 10.1371/journal.pone.0043028. Epub 2012 Aug 20.
28. Schroer TA, Annu Rev Cell Dev Biol. 2004;20:759-79.
29. Schwander M, etal., J Cell Biol. 2010 Jul 12;190(1):9-20. doi: 10.1083/jcb.201001138.
30. Shartava A, etal., Am J Hematol. 1997 Jun;55(2):97-103.
31. Song KS, etal., FEBS Lett. 2006 Apr 3;580(8):1993-8. Epub 2006 Mar 6.
32. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
33. Swijsen A, etal., BMC Res Notes. 2012 Dec 13;5:685. doi: 10.1186/1756-0500-5-685.
34. Tygstrup N, etal., Biochem Biophys Res Commun 2002 Jan 11;290(1):518-25.
35. Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.
36. Wyneken U, etal., Neuroscience. 2001;102(1):65-74.
37. Zhou F, etal., Clin Biochem. 2019 May;67:1-6. doi: 10.1016/j.clinbiochem.2019.02.011. Epub 2019 Feb 25.
Additional References at PubMed
PMID:6202424   PMID:10966108   PMID:11373276   PMID:11487543   PMID:11563969   PMID:11687588   PMID:11931770   PMID:11964161   PMID:12598619   PMID:14756242   PMID:14760703   PMID:15121898  
PMID:15271982   PMID:15336526   PMID:15489334   PMID:16189514   PMID:16217013   PMID:16502470   PMID:16687403   PMID:16935300   PMID:17289661   PMID:17404223   PMID:17502619   PMID:17634366  
PMID:18234857   PMID:18341992   PMID:18519736   PMID:18680169   PMID:18723693   PMID:19000816   PMID:19118186   PMID:19182904   PMID:19190083   PMID:19199708   PMID:19703590   PMID:19946888  
PMID:20124353   PMID:20131911   PMID:20383143   PMID:20458337   PMID:21362503   PMID:21423176   PMID:21516116   PMID:21869818   PMID:22215678   PMID:22355657   PMID:22516433   PMID:22664934  
PMID:22724288   PMID:22855531   PMID:22871113   PMID:22926577   PMID:23382103   PMID:23426659   PMID:23533145   PMID:23580065   PMID:23736358   PMID:24327345   PMID:24415753   PMID:24913911  
PMID:24962708   PMID:25187167   PMID:25416956   PMID:25502805   PMID:25753039   PMID:25865156   PMID:25910212   PMID:26060893   PMID:26152301   PMID:26286380   PMID:26894662   PMID:27339813  
PMID:27840001   PMID:27923787   PMID:28259758   PMID:29040437   PMID:29339092   PMID:29476059   PMID:29892012   PMID:29956586   PMID:31515488   PMID:32015554   PMID:33724537  


Genomics

Comparative Map Data
Actb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21211,663,112 - 11,666,697 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1211,663,109 - 11,672,877 (+)Ensembl
Rnor_6.01213,715,843 - 13,718,813 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,715,843 - 13,718,841 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,745,856 - 15,749,440 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,047,070 - 12,050,040 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11212,076,997 - 12,079,967 (+)NCBI
Celera1213,452,443 - 13,455,413 (+)NCBICelera
Cytogenetic Map12p11NCBI
ACTB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl75,526,409 - 5,563,902 (-)EnsemblGRCh38hg38GRCh38
GRCh3875,527,148 - 5,530,601 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3775,566,779 - 5,570,232 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3675,533,312 - 5,536,747 (-)NCBINCBI36hg18NCBI36
Build 3475,340,026 - 5,343,462NCBI
Celera75,526,560 - 5,530,009 (-)NCBI
Cytogenetic Map7p22.1NCBI
HuRef75,479,343 - 5,482,774 (-)NCBIHuRef
CHM1_175,566,362 - 5,569,815 (-)NCBICHM1_1
CRA_TCAGchr7v275,613,124 - 5,616,577 (-)NCBI
Actb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395142,888,870 - 142,892,509 (-)NCBIGRCm39mm39
GRCm39 Ensembl5142,888,870 - 142,892,509 (-)Ensembl
GRCm385142,903,115 - 142,907,976 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5142,903,115 - 142,906,754 (-)EnsemblGRCm38mm10GRCm38
MGSCv375143,664,795 - 143,668,403 (-)NCBIGRCm37mm9NCBIm37
MGSCv365143,168,256 - 143,171,864 (-)NCBImm8
Celera5139,951,533 - 139,955,141 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map581.8NCBI
Actb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,356,699 - 10,361,585 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546010,358,100 - 10,361,585 (-)NCBIChiLan1.0ChiLan1.0
ACTB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,421,006 - 12,424,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl612,418,932 - 12,462,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,893,047 - 13,896,436 (+)NCBI
ROS_Cfam_1.0612,557,673 - 12,561,075 (+)NCBI
UMICH_Zoey_3.1612,367,765 - 12,371,152 (+)NCBI
UNSW_CanFamBas_1.0612,301,595 - 12,304,986 (+)NCBI
UU_Cfam_GSD_1.0612,578,988 - 12,582,384 (+)NCBI
Actb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,675,973 - 140,679,567 (+)NCBI
SpeTri2.0NW_004936765667,107 - 670,627 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,082,216 - 4,090,356 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,084,275 - 4,090,383 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.234,729,278 - 4,732,693 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACTB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12816,195,676 - 16,197,161 (+)NCBI
Vero_WHO_p1.0NW_0236660905,777,528 - 5,781,244 (-)NCBI
Actb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474028,087,051 - 28,090,359 (+)NCBI

Position Markers
PMC101699P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12p11UniSTS
PMC102156P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,071 - 11,665,291 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,803 - 13,718,022NCBIRnor6.0
Rnor_5.01215,747,816 - 15,748,035UniSTSRnor5.0
RGSC_v3.41212,049,030 - 12,049,249UniSTSRGSC3.4
Celera1213,454,403 - 13,454,622UniSTS
Cytogenetic Map12p11UniSTS
PMC104029P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25120,658,192 - 120,658,630 (+)MAPPERmRatBN7.2
mRatBN7.21211,666,191 - 11,666,643 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,922 - 13,719,373NCBIRnor6.0
Rnor_6.05125,373,190 - 125,373,627NCBIRnor6.0
Rnor_5.01215,748,935 - 15,749,386UniSTSRnor5.0
Rnor_5.05129,230,583 - 129,231,020UniSTSRnor5.0
RGSC_v3.45126,881,227 - 126,881,664UniSTSRGSC3.4
RGSC_v3.41212,050,149 - 12,050,600UniSTSRGSC3.4
Celera1213,455,522 - 13,455,973UniSTS
Celera5119,421,278 - 119,421,715UniSTS
Cytogenetic Map12p11UniSTS
PMC108483P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,577 - 11,666,050 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,748 - 120,659,098 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,746 - 125,374,095NCBIRnor6.0
Rnor_6.01213,718,309 - 13,718,781NCBIRnor6.0
Rnor_5.01215,748,322 - 15,748,794UniSTSRnor5.0
Rnor_5.05129,231,139 - 129,231,488UniSTSRnor5.0
RGSC_v3.45126,881,783 - 126,882,132UniSTSRGSC3.4
RGSC_v3.41212,049,536 - 12,050,008UniSTSRGSC3.4
Celera1213,454,909 - 13,455,381UniSTS
Celera5119,421,834 - 119,422,183UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC109669P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,199 - 11,666,019 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,931 - 13,718,750NCBIRnor6.0
Rnor_5.01215,747,944 - 15,748,763UniSTSRnor5.0
RGSC_v3.41212,049,158 - 12,049,977UniSTSRGSC3.4
Celera1213,454,531 - 13,455,350UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map19q12UniSTS
PMC110672P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,125 - 11,665,642 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,857 - 13,718,373NCBIRnor6.0
Rnor_5.01215,747,870 - 15,748,386UniSTSRnor5.0
RGSC_v3.41212,049,084 - 12,049,600UniSTSRGSC3.4
Celera1213,454,457 - 13,454,973UniSTS
Cytogenetic Map12p11UniSTS
PMC114236P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,293 - 11,665,960 (+)MAPPERmRatBN7.2
mRatBN7.24133,310,597 - 133,311,048 (+)MAPPERmRatBN7.2
Rnor_6.04133,138,300 - 133,138,750NCBIRnor6.0
Rnor_6.01213,718,025 - 13,718,691NCBIRnor6.0
Rnor_5.01215,748,038 - 15,748,704UniSTSRnor5.0
Rnor_5.04197,621,561 - 197,622,011UniSTSRnor5.0
RGSC_v3.44135,576,684 - 135,577,134UniSTSRGSC3.4
RGSC_v3.41212,049,252 - 12,049,918UniSTSRGSC3.4
Celera1213,454,625 - 13,455,291UniSTS
Celera4122,154,375 - 122,154,825UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map4q34UniSTS
PMC117781P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25120,658,755 - 120,659,098 (+)MAPPERmRatBN7.2
mRatBN7.21211,665,577 - 11,666,043 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,309 - 13,718,774NCBIRnor6.0
Rnor_6.05125,373,753 - 125,374,095NCBIRnor6.0
Rnor_5.01215,748,322 - 15,748,787UniSTSRnor5.0
Rnor_5.05129,231,146 - 129,231,488UniSTSRnor5.0
RGSC_v3.45126,881,790 - 126,882,132UniSTSRGSC3.4
RGSC_v3.41212,049,536 - 12,050,001UniSTSRGSC3.4
Celera1213,454,909 - 13,455,374UniSTS
Celera5119,421,841 - 119,422,183UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC125345P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,577 - 11,666,050 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,748 - 120,659,098 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,746 - 125,374,095NCBIRnor6.0
Rnor_6.01213,718,309 - 13,718,781NCBIRnor6.0
Rnor_5.01215,748,322 - 15,748,794UniSTSRnor5.0
Rnor_5.05129,231,139 - 129,231,488UniSTSRnor5.0
RGSC_v3.45126,881,783 - 126,882,132UniSTSRGSC3.4
RGSC_v3.41212,049,536 - 12,050,008UniSTSRGSC3.4
Celera1213,454,909 - 13,455,381UniSTS
Celera5119,421,834 - 119,422,183UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC133829P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,577 - 11,666,050 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,748 - 120,659,098 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,746 - 125,374,095NCBIRnor6.0
Rnor_6.01213,718,309 - 13,718,781NCBIRnor6.0
Rnor_5.01215,748,322 - 15,748,794UniSTSRnor5.0
Rnor_5.05129,231,139 - 129,231,488UniSTSRnor5.0
RGSC_v3.45126,881,783 - 126,882,132UniSTSRGSC3.4
RGSC_v3.41212,049,536 - 12,050,008UniSTSRGSC3.4
Celera1213,454,909 - 13,455,381UniSTS
Celera5119,421,834 - 119,422,183UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC136359P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,577 - 11,665,752 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,309 - 13,718,483NCBIRnor6.0
Rnor_5.01215,748,322 - 15,748,496UniSTSRnor5.0
RGSC_v3.41212,049,536 - 12,049,710UniSTSRGSC3.4
Celera1213,454,909 - 13,455,083UniSTS
Cytogenetic Map12p11UniSTS
PMC137548P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,548 - 11,665,447 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,280 - 13,718,178NCBIRnor6.0
Rnor_5.01215,747,293 - 15,748,191UniSTSRnor5.0
RGSC_v3.41212,048,507 - 12,049,405UniSTSRGSC3.4
Celera1213,453,880 - 13,454,778UniSTS
Cytogenetic Map12p11UniSTS
PMC137792P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,381 - 11,665,083 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,113 - 13,717,814NCBIRnor6.0
Rnor_5.01215,747,126 - 15,747,827UniSTSRnor5.0
RGSC_v3.41212,048,340 - 12,049,041UniSTSRGSC3.4
Celera1213,453,713 - 13,454,414UniSTS
Cytogenetic Map12p11UniSTS
PMC138261P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12p11UniSTS
Cytogenetic Map10q32.3UniSTS
Cytogenetic Map18p12UniSTS
PMC139793P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,629 - 11,666,050 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,361 - 13,718,781NCBIRnor6.0
Rnor_5.01215,748,374 - 15,748,794UniSTSRnor5.0
RGSC_v3.41212,049,588 - 12,050,008UniSTSRGSC3.4
Celera1213,454,961 - 13,455,381UniSTS
Cytogenetic Map12p11UniSTS
PMC148838P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12p11UniSTS
PMC149351P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,544 - 11,665,406 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,276 - 13,718,137NCBIRnor6.0
Rnor_5.01215,747,289 - 15,748,150UniSTSRnor5.0
RGSC_v3.41212,048,503 - 12,049,364UniSTSRGSC3.4
Celera1213,453,876 - 13,454,737UniSTS
Cytogenetic Map12p11UniSTS
PMC151001P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,956 - 11,666,081 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,688 - 13,718,812NCBIRnor6.0
Rnor_5.01215,748,701 - 15,748,825UniSTSRnor5.0
RGSC_v3.41212,049,915 - 12,050,039UniSTSRGSC3.4
Celera1213,455,288 - 13,455,412UniSTS
Cytogenetic Map12p11UniSTS
PMC152551P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X2,281,592 - 2,281,856 (+)MAPPERmRatBN7.2
mRatBN7.2X2,480,869 - 2,481,133 (-)MAPPERmRatBN7.2
mRatBN7.21211,665,050 - 11,665,317 (+)MAPPERmRatBN7.2
Rnor_6.0X2,509,978 - 2,510,240NCBIRnor6.0
Rnor_6.01213,717,782 - 13,718,048NCBIRnor6.0
Rnor_5.01215,747,795 - 15,748,061UniSTSRnor5.0
Rnor_5.0X3,300,207 - 3,300,469UniSTSRnor5.0
Celera1213,454,382 - 13,454,648UniSTS
CeleraX3,004,715 - 3,004,978UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map12p11UniSTS
PMC154439P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,106 - 11,665,634 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,838 - 13,718,365NCBIRnor6.0
Rnor_5.01215,747,851 - 15,748,378UniSTSRnor5.0
RGSC_v3.41212,049,065 - 12,049,592UniSTSRGSC3.4
Celera1213,454,438 - 13,454,965UniSTS
Cytogenetic Map12p11UniSTS
PMC156330P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1951,258,498 - 51,259,502UniSTS
Celera1213,454,501 - 13,455,354UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map18p12UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map10q32.3UniSTS
PMC180915P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,054 - 11,665,416 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,786 - 13,718,147NCBIRnor6.0
Rnor_5.01215,747,799 - 15,748,160UniSTSRnor5.0
RGSC_v3.41212,049,013 - 12,049,374UniSTSRGSC3.4
Celera1213,454,386 - 13,454,747UniSTS
Cytogenetic Map12p11UniSTS
PMC201106P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12p11UniSTS
Cytogenetic Map10q32.3UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map18p12UniSTS
PMC20960P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,621 - 11,665,967 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,353 - 13,718,698NCBIRnor6.0
Rnor_5.01215,748,366 - 15,748,711UniSTSRnor5.0
RGSC_v3.41212,049,580 - 12,049,925UniSTSRGSC3.4
Celera1213,454,953 - 13,455,298UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map4q34UniSTS
PMC224995P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,048 - 11,665,633 (+)MAPPERmRatBN7.2
mRatBN7.2X36,181,420 - 36,181,912 (+)MAPPERmRatBN7.2
Rnor_6.0X38,953,005 - 38,953,496NCBIRnor6.0
Rnor_6.01213,717,780 - 13,718,364NCBIRnor6.0
Rnor_5.01215,747,793 - 15,748,377UniSTSRnor5.0
Rnor_5.0X39,259,421 - 39,259,912UniSTSRnor5.0
RGSC_v3.4X57,424,865 - 57,425,356UniSTSRGSC3.4
RGSC_v3.41212,049,007 - 12,049,591UniSTSRGSC3.4
Celera1213,454,380 - 13,454,964UniSTS
CeleraX36,832,475 - 36,832,966UniSTS
Cytogenetic Map12p11UniSTS
PMC22644P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12p11UniSTS
Cytogenetic Map10q32.3UniSTS
Cytogenetic Map18p12UniSTS
PMC23951P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,100 - 11,665,665 (+)MAPPERmRatBN7.2
mRatBN7.2X109,620,324 - 109,620,789 (+)MAPPERmRatBN7.2
Rnor_6.0X117,762,648 - 117,763,112NCBIRnor6.0
Rnor_6.01213,717,832 - 13,718,396NCBIRnor6.0
Rnor_5.01215,747,845 - 15,748,409UniSTSRnor5.0
Rnor_5.0X117,900,428 - 117,900,892UniSTSRnor5.0
RGSC_v3.4X32,374,387 - 32,374,851UniSTSRGSC3.4
RGSC_v3.41212,049,059 - 12,049,623UniSTSRGSC3.4
Celera1213,454,432 - 13,454,996UniSTS
CeleraX108,989,586 - 108,990,050UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic MapXq14UniSTS
PMC240671P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25120,658,784 - 120,659,043 (+)MAPPERmRatBN7.2
mRatBN7.21211,665,632 - 11,666,014 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,364 - 13,718,745NCBIRnor6.0
Rnor_6.05125,373,782 - 125,374,040NCBIRnor6.0
Rnor_5.01215,748,377 - 15,748,758UniSTSRnor5.0
Rnor_5.05129,231,175 - 129,231,433UniSTSRnor5.0
RGSC_v3.45126,881,819 - 126,882,077UniSTSRGSC3.4
RGSC_v3.41212,049,591 - 12,049,972UniSTSRGSC3.4
Celera1213,454,964 - 13,455,345UniSTS
Celera5119,421,870 - 119,422,128UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC26753P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,249 - 11,665,906 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,981 - 13,718,637NCBIRnor6.0
Rnor_5.01215,747,994 - 15,748,650UniSTSRnor5.0
RGSC_v3.41212,049,208 - 12,049,864UniSTSRGSC3.4
Celera1213,454,581 - 13,455,237UniSTS
Cytogenetic Map12p11UniSTS
PMC275467P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X2,281,592 - 2,281,843 (+)MAPPERmRatBN7.2
mRatBN7.2X2,480,882 - 2,481,133 (-)MAPPERmRatBN7.2
mRatBN7.21211,665,063 - 11,665,317 (+)MAPPERmRatBN7.2
Rnor_6.0X2,509,978 - 2,510,227NCBIRnor6.0
Rnor_6.01213,717,795 - 13,718,048NCBIRnor6.0
Rnor_5.01215,747,808 - 15,748,061UniSTSRnor5.0
Rnor_5.0X3,300,207 - 3,300,456UniSTSRnor5.0
Celera1213,454,395 - 13,454,648UniSTS
CeleraX3,004,728 - 3,004,978UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map12p11UniSTS
PMC302066P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12p11UniSTS
Cytogenetic Map10q32.3UniSTS
Cytogenetic Map18p12UniSTS
PMC304100P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,998 - 11,665,119 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,730 - 13,717,850NCBIRnor6.0
Rnor_5.01215,747,743 - 15,747,863UniSTSRnor5.0
RGSC_v3.41212,048,957 - 12,049,077UniSTSRGSC3.4
Celera1213,454,330 - 13,454,450UniSTS
Cytogenetic Map12p11UniSTS
PMC340938P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,393 - 11,665,642 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,125 - 13,718,373NCBIRnor6.0
Rnor_5.01215,748,138 - 15,748,386UniSTSRnor5.0
RGSC_v3.41212,049,352 - 12,049,600UniSTSRGSC3.4
Celera1213,454,725 - 13,454,973UniSTS
Cytogenetic Map12p11UniSTS
PMC85361P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,052 - 11,665,409 (+)MAPPERmRatBN7.2
mRatBN7.2X109,620,276 - 109,620,627 (+)MAPPERmRatBN7.2
Rnor_6.0X117,762,600 - 117,762,950NCBIRnor6.0
Rnor_6.01213,717,784 - 13,718,140NCBIRnor6.0
Rnor_5.01215,747,797 - 15,748,153UniSTSRnor5.0
Rnor_5.0X117,900,380 - 117,900,730UniSTSRnor5.0
RGSC_v3.4X32,374,549 - 32,374,899UniSTSRGSC3.4
RGSC_v3.41212,049,011 - 12,049,367UniSTSRGSC3.4
Celera1213,454,384 - 13,454,740UniSTS
CeleraX108,989,538 - 108,989,888UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic MapXq14UniSTS
PMC96811P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,087 - 11,665,738 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,819 - 13,718,469NCBIRnor6.0
Rnor_5.01215,747,832 - 15,748,482UniSTSRnor5.0
RGSC_v3.41212,049,046 - 12,049,696UniSTSRGSC3.4
Celera1213,454,419 - 13,455,069UniSTS
Cytogenetic Map12p11UniSTS
PMC97568P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12p11UniSTS
Cytogenetic Map10q32.3UniSTS
Cytogenetic Map18p12UniSTS
PMC98352P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,197 - 11,665,992 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,929 - 13,718,723NCBIRnor6.0
Rnor_5.01215,747,942 - 15,748,736UniSTSRnor5.0
RGSC_v3.41212,049,156 - 12,049,950UniSTSRGSC3.4
Celera1213,454,529 - 13,455,323UniSTS
Cytogenetic Map12p11UniSTS
Actb-rs1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,660 - 11,666,072 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,727 - 120,659,015 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,725 - 125,374,012NCBIRnor6.0
Rnor_6.01213,718,392 - 13,718,803NCBIRnor6.0
Rnor_5.01215,748,405 - 15,748,816UniSTSRnor5.0
Rnor_5.05129,231,118 - 129,231,405UniSTSRnor5.0
RGSC_v3.45126,881,762 - 126,882,049UniSTSRGSC3.4
RGSC_v3.41212,049,619 - 12,050,030UniSTSRGSC3.4
Celera1213,454,992 - 13,455,403UniSTS
Celera5119,421,813 - 119,422,100UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC122623P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25120,658,789 - 120,658,908 (+)MAPPERmRatBN7.2
mRatBN7.21211,665,887 - 11,666,009 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,619 - 13,718,740NCBIRnor6.0
Rnor_6.05125,373,787 - 125,373,905NCBIRnor6.0
Rnor_5.01215,748,632 - 15,748,753UniSTSRnor5.0
Rnor_5.05129,231,180 - 129,231,298UniSTSRnor5.0
RGSC_v3.45126,881,824 - 126,881,942UniSTSRGSC3.4
RGSC_v3.41212,049,846 - 12,049,967UniSTSRGSC3.4
Celera1213,455,219 - 13,455,340UniSTS
Celera5119,421,875 - 119,421,993UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC125678P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,548 - 11,665,097 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,280 - 13,717,828NCBIRnor6.0
Rnor_5.01215,747,293 - 15,747,841UniSTSRnor5.0
RGSC_v3.41212,048,507 - 12,049,055UniSTSRGSC3.4
Celera1213,453,880 - 13,454,428UniSTS
Cytogenetic Map12p11UniSTS
PMC133768P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,205 - 11,665,364 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,937 - 13,718,095NCBIRnor6.0
Rnor_5.01215,747,950 - 15,748,108UniSTSRnor5.0
RGSC_v3.41212,049,164 - 12,049,322UniSTSRGSC3.4
Celera1213,454,537 - 13,454,695UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map19q12UniSTS
PMC138011P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,360 - 11,666,006 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,792 - 120,659,225 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,790 - 125,374,222NCBIRnor6.0
Rnor_6.01213,718,092 - 13,718,737NCBIRnor6.0
Rnor_5.01215,748,105 - 15,748,750UniSTSRnor5.0
Rnor_5.05129,231,183 - 129,231,615UniSTSRnor5.0
RGSC_v3.45126,881,827 - 126,882,259UniSTSRGSC3.4
RGSC_v3.41212,049,319 - 12,049,964UniSTSRGSC3.4
Celera1213,454,692 - 13,455,337UniSTS
Celera5119,421,878 - 119,422,310UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC145386P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,582 - 11,666,047 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,751 - 120,659,093 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,749 - 125,374,090NCBIRnor6.0
Rnor_6.01213,718,314 - 13,718,778NCBIRnor6.0
Rnor_5.01215,748,327 - 15,748,791UniSTSRnor5.0
Rnor_5.05129,231,142 - 129,231,483UniSTSRnor5.0
RGSC_v3.45126,881,786 - 126,882,127UniSTSRGSC3.4
RGSC_v3.41212,049,541 - 12,050,005UniSTSRGSC3.4
Celera1213,454,914 - 13,455,378UniSTS
Celera5119,421,837 - 119,422,178UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC150974P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,202 - 11,666,036 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,934 - 13,718,767NCBIRnor6.0
Rnor_5.01215,747,947 - 15,748,780UniSTSRnor5.0
RGSC_v3.41212,049,161 - 12,049,994UniSTSRGSC3.4
RGSC_v3.4X13,700,285 - 13,700,891UniSTSRGSC3.4
Celera1213,454,534 - 13,455,367UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic MapXq12UniSTS
PMC151804P4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,081 - 11,665,185 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,813 - 13,717,916NCBIRnor6.0
Rnor_5.01215,747,826 - 15,747,929UniSTSRnor5.0
RGSC_v3.41212,049,040 - 12,049,143UniSTSRGSC3.4
Celera1213,454,413 - 13,454,516UniSTS
Cytogenetic Map12p11UniSTS
PMC153958P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,639 - 11,666,112 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,371 - 13,718,843NCBIRnor6.0
Rnor_5.01215,748,384 - 15,748,856UniSTSRnor5.0
RGSC_v3.41212,049,598 - 12,050,070UniSTSRGSC3.4
Celera1213,454,971 - 13,455,444UniSTS
Cytogenetic Map12p11UniSTS
PMC156124P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12p11UniSTS
Cytogenetic Map10q32.3UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map18p12UniSTS
PMC18465P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,230 - 11,664,560 (+)MAPPERmRatBN7.2
Rnor_6.01213,716,962 - 13,717,291NCBIRnor6.0
Rnor_5.01215,746,975 - 15,747,304UniSTSRnor5.0
RGSC_v3.41212,048,189 - 12,048,518UniSTSRGSC3.4
Celera1213,453,562 - 13,453,891UniSTS
Cytogenetic Map12p11UniSTS
PMC19354P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25120,658,752 - 120,659,095 (+)MAPPERmRatBN7.2
mRatBN7.21211,665,580 - 11,666,046 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,312 - 13,718,777NCBIRnor6.0
Rnor_6.05125,373,750 - 125,374,092NCBIRnor6.0
Rnor_5.01215,748,325 - 15,748,790UniSTSRnor5.0
Rnor_5.05129,231,143 - 129,231,485UniSTSRnor5.0
RGSC_v3.45126,881,787 - 126,882,129UniSTSRGSC3.4
RGSC_v3.41212,049,539 - 12,050,004UniSTSRGSC3.4
Celera1213,454,912 - 13,455,377UniSTS
Celera5119,421,838 - 119,422,180UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC207566P4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,129 - 11,664,366 (+)MAPPERmRatBN7.2
Rnor_6.01213,716,861 - 13,717,097NCBIRnor6.0
Rnor_5.01215,746,874 - 15,747,110UniSTSRnor5.0
RGSC_v3.41212,048,088 - 12,048,324UniSTSRGSC3.4
Celera1213,453,461 - 13,453,697UniSTS
Cytogenetic Map12p11UniSTS
PMC21334P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,666,216 - 11,666,669 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,947 - 13,719,399NCBIRnor6.0
Rnor_5.01215,748,960 - 15,749,412UniSTSRnor5.0
RGSC_v3.41212,050,174 - 12,050,626UniSTSRGSC3.4
Celera1213,455,547 - 13,455,999UniSTS
Cytogenetic Map12p11UniSTS
PMC84911P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12p11UniSTS
PMC102052P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,442 - 11,666,016 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,174 - 13,718,747NCBIRnor6.0
Rnor_5.01215,748,187 - 15,748,760UniSTSRnor5.0
RGSC_v3.41212,049,401 - 12,049,974UniSTSRGSC3.4
Celera1213,454,774 - 13,455,347UniSTS
Cytogenetic Map12p11UniSTS
PMC107891P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,341 - 11,665,321 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,073 - 13,718,052NCBIRnor6.0
Rnor_5.01215,747,086 - 15,748,065UniSTSRnor5.0
RGSC_v3.41212,048,300 - 12,049,279UniSTSRGSC3.4
Celera1213,453,673 - 13,454,652UniSTS
Cytogenetic Map12p11UniSTS
PMC115141P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,047 - 11,665,365 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,779 - 13,718,096NCBIRnor6.0
Rnor_5.01215,747,792 - 15,748,109UniSTSRnor5.0
RGSC_v3.41212,049,006 - 12,049,323UniSTSRGSC3.4
Celera1213,454,379 - 13,454,696UniSTS
Cytogenetic Map12p11UniSTS
PMC117352P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,336 - 11,664,496 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,068 - 13,717,227NCBIRnor6.0
Rnor_5.01215,747,081 - 15,747,240UniSTSRnor5.0
RGSC_v3.41212,048,295 - 12,048,454UniSTSRGSC3.4
Celera1213,453,668 - 13,453,827UniSTS
Cytogenetic Map12p11UniSTS
PMC117780P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,163 - 11,665,718 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,895 - 13,718,449NCBIRnor6.0
Rnor_5.01215,747,908 - 15,748,462UniSTSRnor5.0
RGSC_v3.41212,049,122 - 12,049,676UniSTSRGSC3.4
Celera1213,454,495 - 13,455,049UniSTS
Cytogenetic Map12p11UniSTS
PMC122924P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,132 - 11,665,124 (+)MAPPERmRatBN7.2
Rnor_6.01213,716,864 - 13,717,855NCBIRnor6.0
Rnor_5.01215,746,877 - 15,747,868UniSTSRnor5.0
RGSC_v3.41212,048,091 - 12,049,082UniSTSRGSC3.4
Celera1213,453,464 - 13,454,455UniSTS
Cytogenetic Map12p11UniSTS
PMC133998P8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,403 - 11,665,406 (+)MAPPERmRatBN7.2
mRatBN7.21951,884,568 - 51,885,392 (+)MAPPERmRatBN7.2
Rnor_6.01956,674,928 - 56,675,751NCBIRnor6.0
Rnor_6.01213,717,135 - 13,718,137NCBIRnor6.0
Rnor_5.01967,390,755 - 67,391,578UniSTSRnor5.0
Rnor_5.01215,747,148 - 15,748,150UniSTSRnor5.0
RGSC_v3.41954,082,352 - 54,083,175UniSTSRGSC3.4
RGSC_v3.41212,048,362 - 12,049,364UniSTSRGSC3.4
Celera1213,453,735 - 13,454,737UniSTS
Celera1951,259,168 - 51,259,991UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map19q12UniSTS
PMC187403P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,121 - 11,665,341 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,853 - 13,718,072NCBIRnor6.0
Rnor_5.01215,747,866 - 15,748,085UniSTSRnor5.0
RGSC_v3.41212,049,080 - 12,049,299UniSTSRGSC3.4
Celera1213,454,453 - 13,454,672UniSTS
Cytogenetic Map12p11UniSTS
LOC345651  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,470 - 11,665,066 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,202 - 13,717,797NCBIRnor6.0
Rnor_5.01215,747,215 - 15,747,810UniSTSRnor5.0
RGSC_v3.41212,048,429 - 12,049,024UniSTSRGSC3.4
Celera1213,453,802 - 13,454,397UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map3q35UniSTS
mActb  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,666,024 - 11,666,464 (+)MAPPERmRatBN7.2
mRatBN7.25120,658,368 - 120,658,774 (+)MAPPERmRatBN7.2
Rnor_6.05125,373,366 - 125,373,771NCBIRnor6.0
Rnor_6.01213,718,756 - 13,719,194NCBIRnor6.0
Rnor_5.01215,748,769 - 15,749,207UniSTSRnor5.0
Rnor_5.05129,230,759 - 129,231,164UniSTSRnor5.0
RGSC_v3.45126,881,403 - 126,881,808UniSTSRGSC3.4
RGSC_v3.41212,049,983 - 12,050,421UniSTSRGSC3.4
Celera1213,455,356 - 13,455,794UniSTS
Celera5119,421,454 - 119,421,859UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map5q34UniSTS
PMC209527P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,359 - 11,665,325 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,091 - 13,718,056NCBIRnor6.0
Rnor_5.01215,747,104 - 15,748,069UniSTSRnor5.0
RGSC_v3.41212,048,318 - 12,049,283UniSTSRGSC3.4
Celera1213,453,691 - 13,454,656UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map19q12UniSTS
PMC21071P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,616 - 11,666,025 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,348 - 13,718,756NCBIRnor6.0
Rnor_5.01215,748,361 - 15,748,769UniSTSRnor5.0
RGSC_v3.41212,049,575 - 12,049,983UniSTSRGSC3.4
Celera1213,454,948 - 13,455,356UniSTS
Cytogenetic Map12p11UniSTS
PMC212730P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,726 - 11,665,925 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,458 - 13,718,656NCBIRnor6.0
Rnor_5.01215,748,471 - 15,748,669UniSTSRnor5.0
RGSC_v3.41212,049,685 - 12,049,883UniSTSRGSC3.4
Celera1213,455,058 - 13,455,256UniSTS
Cytogenetic Map12p11UniSTS
PMC24644P4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,230 - 11,664,560 (+)MAPPERmRatBN7.2
Rnor_6.01213,716,962 - 13,717,291NCBIRnor6.0
Rnor_5.01215,746,975 - 15,747,304UniSTSRnor5.0
RGSC_v3.41212,048,189 - 12,048,518UniSTSRGSC3.4
Celera1213,453,562 - 13,453,891UniSTS
Cytogenetic Map12p11UniSTS
PMC30411P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,159 - 11,664,567 (+)MAPPERmRatBN7.2
Rnor_6.01213,716,891 - 13,717,298NCBIRnor6.0
Rnor_5.01215,746,904 - 15,747,311UniSTSRnor5.0
RGSC_v3.41212,048,118 - 12,048,525UniSTSRGSC3.4
Celera1213,453,491 - 13,453,898UniSTS
Cytogenetic Map12p11UniSTS
PMC33181P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,582 - 11,666,021 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,314 - 13,718,752NCBIRnor6.0
Rnor_5.01215,748,327 - 15,748,765UniSTSRnor5.0
RGSC_v3.41212,049,541 - 12,049,979UniSTSRGSC3.4
Celera1213,454,914 - 13,455,352UniSTS
Cytogenetic Map12p11UniSTS
PMC33279P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,386 - 11,665,312 (+)MAPPERmRatBN7.2
mRatBN7.24133,310,167 - 133,310,617 (+)MAPPERmRatBN7.2
Rnor_6.04133,137,870 - 133,138,319NCBIRnor6.0
Rnor_6.01213,717,118 - 13,718,043NCBIRnor6.0
Rnor_5.01215,747,131 - 15,748,056UniSTSRnor5.0
Rnor_5.04197,621,131 - 197,621,580UniSTSRnor5.0
RGSC_v3.44135,576,254 - 135,576,703UniSTSRGSC3.4
RGSC_v3.41212,048,345 - 12,049,270UniSTSRGSC3.4
Celera1213,453,718 - 13,454,643UniSTS
Celera4122,153,945 - 122,154,394UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map4q34UniSTS
PMC350549P3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,472 - 11,665,092 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,204 - 13,717,823NCBIRnor6.0
Rnor_5.01215,747,217 - 15,747,836UniSTSRnor5.0
RGSC_v3.41212,048,431 - 12,049,050UniSTSRGSC3.4
Celera1213,453,804 - 13,454,423UniSTS
Cytogenetic Map12p11UniSTS
PMC356969P12  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,471 - 11,665,267 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,203 - 13,717,998NCBIRnor6.0
Rnor_5.01215,747,216 - 15,748,011UniSTSRnor5.0
RGSC_v3.41212,048,430 - 12,049,225UniSTSRGSC3.4
RGSC_v3.4X13,904,156 - 13,904,483UniSTSRGSC3.4
Celera1213,453,803 - 13,454,598UniSTS
CeleraX3,004,603 - 3,004,930UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic MapXq12UniSTS
PMC37512P3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,071 - 11,665,321 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,803 - 13,718,052NCBIRnor6.0
Rnor_5.01215,747,816 - 15,748,065UniSTSRnor5.0
RGSC_v3.41212,049,030 - 12,049,279UniSTSRGSC3.4
Celera1213,454,403 - 13,454,652UniSTS
Cytogenetic Map12p11UniSTS
PMC86032P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,414 - 11,665,324 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,146 - 13,718,055NCBIRnor6.0
Rnor_5.01215,747,159 - 15,748,068UniSTSRnor5.0
RGSC_v3.41212,048,373 - 12,049,282UniSTSRGSC3.4
Celera1213,453,746 - 13,454,655UniSTS
Cytogenetic Map12p11UniSTS
PMC87052P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,379 - 11,666,026 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,111 - 13,718,757NCBIRnor6.0
Rnor_5.01215,748,124 - 15,748,770UniSTSRnor5.0
RGSC_v3.41212,049,338 - 12,049,984UniSTSRGSC3.4
Celera1213,454,711 - 13,455,357UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map19q12UniSTS
PMC97445P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,132 - 11,665,125 (+)MAPPERmRatBN7.2
Rnor_6.01213,716,864 - 13,717,856NCBIRnor6.0
Rnor_5.01215,746,877 - 15,747,869UniSTSRnor5.0
RGSC_v3.41212,048,091 - 12,049,083UniSTSRGSC3.4
Celera1213,453,464 - 13,454,456UniSTS
Cytogenetic Map12p11UniSTS
PMC99880P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,050 - 11,665,368 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,782 - 13,718,099NCBIRnor6.0
Rnor_5.01215,747,795 - 15,748,112UniSTSRnor5.0
RGSC_v3.41212,049,009 - 12,049,326UniSTSRGSC3.4
Celera1213,454,382 - 13,454,699UniSTS
Cytogenetic Map12p11UniSTS
Actb  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X2,281,288 - 2,281,798 (+)MAPPERmRatBN7.2
mRatBN7.2X2,480,927 - 2,481,437 (-)MAPPERmRatBN7.2
Rnor_6.0X2,509,674 - 2,510,182NCBIRnor6.0
Rnor_5.0X3,299,903 - 3,300,411UniSTSRnor5.0
RGSC_v3.4X13,700,476 - 13,700,985UniSTSRGSC3.4
Celera1213,453,754 - 13,454,454UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map12p11UniSTS
aa658676  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,947 - 11,666,235 (+)MAPPERmRatBN7.2
Rnor_6.01213,718,679 - 13,718,965NCBIRnor6.0
Rnor_5.01215,748,692 - 15,748,978UniSTSRnor5.0
RGSC_v3.41212,049,906 - 12,050,192UniSTSRGSC3.4
Celera1213,455,279 - 13,455,565UniSTS
Cytogenetic Map12p11UniSTS
Actb  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,664,422 - 11,665,123 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,154 - 13,717,854NCBIRnor6.0
Rnor_5.01215,747,167 - 15,747,867UniSTSRnor5.0
RGSC_v3.41212,048,381 - 12,049,081UniSTSRGSC3.4
Celera1213,453,754 - 13,454,454UniSTS
Cytogenetic Map12p11UniSTS
PMC85795P4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X2,281,589 - 2,282,085 (+)MAPPERmRatBN7.2
mRatBN7.2X2,480,640 - 2,481,136 (-)MAPPERmRatBN7.2
mRatBN7.21211,664,354 - 11,665,320 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,086 - 13,718,051NCBIRnor6.0
Rnor_6.0X2,509,975 - 2,510,469NCBIRnor6.0
Rnor_5.0X3,300,204 - 3,300,698UniSTSRnor5.0
Rnor_5.01215,747,099 - 15,748,064UniSTSRnor5.0
Celera1213,453,686 - 13,454,651UniSTS
CeleraX3,004,486 - 3,004,981UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic MapXq12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12931821612829686Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:63
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000042459
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 9 24 33 18 19 18 66 24 37 11
Medium 19 31 23 23 8 11 8 11 4 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB028846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF122902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC063166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF156276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ696744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V01217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000042459   ⟹   ENSRNOP00000044296
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1211,664,123 - 11,666,694 (+)Ensembl
Rnor_6.0 Ensembl1213,715,843 - 13,718,812 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000080216   ⟹   ENSRNOP00000072672
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1211,663,867 - 11,672,877 (+)Ensembl
Rnor_6.0 Ensembl1213,716,596 - 13,718,841 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105242   ⟹   ENSRNOP00000088195
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1211,663,109 - 11,672,877 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116486   ⟹   ENSRNOP00000083381
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1211,664,130 - 11,672,877 (+)Ensembl
RefSeq Acc Id: NM_031144   ⟹   NP_112406
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21211,663,112 - 11,666,082 (+)NCBI
Rnor_6.01213,715,843 - 13,718,813 (+)NCBI
Rnor_5.01215,745,856 - 15,749,440 (+)NCBI
RGSC_v3.41212,047,070 - 12,050,040 (+)RGD
Celera1213,452,443 - 13,455,413 (+)RGD
Sequence:
RefSeq Acc Id: XM_039089807   ⟹   XP_038945735
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21211,664,135 - 11,666,697 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_112406   ⟸   NM_031144
- UniProtKB: P60711 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072672   ⟸   ENSRNOT00000080216
RefSeq Acc Id: ENSRNOP00000044296   ⟸   ENSRNOT00000042459
RefSeq Acc Id: XP_038945735   ⟸   XM_039089807
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000083381   ⟸   ENSRNOT00000116486
RefSeq Acc Id: ENSRNOP00000088195   ⟸   ENSRNOT00000105242

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698446
Promoter ID:EPDNEW_R8971
Type:multiple initiation site
Name:Actb_1
Description:actin, beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01213,715,840 - 13,715,900EPDNEW
RGD ID:6849468
Promoter ID:EP07062
Type:single initiation site
Name:RN_ACTB
Description:beta-actin.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 19; Mammalian, avian beta-actin.
Tissues & Cell Lines:housekeeping gene
Experiment Methods:Nuclease protection with homologous sequence ladder
Position:No map positions available.

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin