Baz1a (bromodomain adjacent to zinc finger domain, 1A) - Rat Genome Database

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Gene: Baz1a (bromodomain adjacent to zinc finger domain, 1A) Rattus norvegicus
Analyze
Symbol: Baz1a
Name: bromodomain adjacent to zinc finger domain, 1A
RGD ID: 1306199
Description: Predicted to enable DNA binding activity. Predicted to be involved in several processes, including nucleosome assembly; regulation of heterochromatin formation; and regulation of nucleobase-containing compound metabolic process. Predicted to be located in nucleus. Predicted to be part of ACF complex; CHRAC; and pericentric heterochromatin. Predicted to be active in nuclear chromosome. Orthologous to human BAZ1A (bromodomain adjacent to zinc finger domain 1A); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bromodomain adjacent to zinc finger domain protein 1A; LOC314126
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2672,389,701 - 72,512,516 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl672,389,703 - 72,512,459 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx672,811,116 - 72,904,088 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0673,117,795 - 73,210,436 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0672,546,804 - 72,639,764 (-)NCBIRnor_WKY
Rnor_6.0675,793,223 - 75,873,854 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl675,793,960 - 75,874,235 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0685,333,774 - 85,412,648 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4675,239,089 - 75,327,488 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1675,242,512 - 75,336,984 (-)NCBI
Celera671,233,873 - 71,314,047 (-)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
daidzein  (ISO)
dibutyl phthalate  (EXP,ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
fenvalerate  (EXP)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glycitein  (ISO)
indometacin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
oxaliplatin  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
succimer  (ISO)
tamoxifen  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
toluene  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8889548   PMID:9701556   PMID:10880450   PMID:11555636   PMID:12434153  


Genomics

Comparative Map Data
Baz1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2672,389,701 - 72,512,516 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl672,389,703 - 72,512,459 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx672,811,116 - 72,904,088 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0673,117,795 - 73,210,436 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0672,546,804 - 72,639,764 (-)NCBIRnor_WKY
Rnor_6.0675,793,223 - 75,873,854 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl675,793,960 - 75,874,235 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0685,333,774 - 85,412,648 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4675,239,089 - 75,327,488 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1675,242,512 - 75,336,984 (-)NCBI
Celera671,233,873 - 71,314,047 (-)NCBICelera
Cytogenetic Map6q23NCBI
BAZ1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381434,752,731 - 34,875,360 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1434,752,731 - 34,875,647 (-)EnsemblGRCh38hg38GRCh38
GRCh371435,221,937 - 35,344,566 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361434,291,688 - 34,414,604 (-)NCBINCBI36Build 36hg18NCBI36
Build 341434,291,689 - 34,414,604NCBI
Celera1415,086,104 - 15,209,015 (-)NCBICelera
Cytogenetic Map14q13.1-q13.2NCBI
HuRef1415,335,300 - 15,458,090 (-)NCBIHuRef
CHM1_11435,220,660 - 35,343,450 (-)NCBICHM1_1
T2T-CHM13v2.01428,951,901 - 29,074,526 (-)NCBIT2T-CHM13v2.0
Baz1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391254,939,774 - 55,061,155 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1254,939,774 - 55,061,133 (-)EnsemblGRCm39 Ensembl
GRCm381254,892,989 - 55,014,371 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1254,892,989 - 55,014,348 (-)EnsemblGRCm38mm10GRCm38
MGSCv371255,993,976 - 56,087,323 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361255,811,119 - 55,908,939 (-)NCBIMGSCv36mm8
Celera1256,156,553 - 56,280,462 (-)NCBICelera
Cytogenetic Map12C1NCBI
Baz1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540926,149,665 - 26,231,180 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540926,136,961 - 26,231,960 (+)NCBIChiLan1.0ChiLan1.0
BAZ1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11435,287,205 - 35,408,592 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01415,510,881 - 15,632,516 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11433,698,645 - 33,813,281 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1433,699,424 - 33,804,473 (-)Ensemblpanpan1.1panPan2
BAZ1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1813,604,694 - 13,694,508 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl813,605,182 - 13,693,847 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha813,402,475 - 13,491,737 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0813,712,075 - 13,801,686 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl813,712,076 - 13,801,192 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1813,412,851 - 13,502,472 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0813,478,243 - 13,567,706 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0813,767,640 - 13,857,159 (-)NCBIUU_Cfam_GSD_1.0
Baz1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864045,462,807 - 45,574,444 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364948,968,704 - 9,080,620 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049364948,968,704 - 9,080,620 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BAZ1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl764,969,640 - 65,069,889 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1764,969,626 - 65,069,969 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2769,799,806 - 69,899,460 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BAZ1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12411,580,379 - 11,708,320 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2411,581,164 - 11,706,292 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666053533,277 - 662,850 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Baz1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248381,908,527 - 2,007,052 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248381,907,825 - 2,007,089 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Baz1a
487 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:340
Count of miRNA genes:200
Interacting mature miRNAs:239
Transcripts:ENSRNOT00000009080
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)67222764181132889Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat

Markers in Region
RH127685  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2672,389,975 - 72,390,163 (+)MAPPERmRatBN7.2
Rnor_6.0675,793,498 - 75,793,685NCBIRnor6.0
Rnor_5.0685,334,049 - 85,334,236UniSTSRnor5.0
RGSC_v3.4675,238,925 - 75,239,112UniSTSRGSC3.4
Celera671,234,148 - 71,234,335UniSTS
Cytogenetic Map6q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 6 34 18 19 18 26 21 35 11
Low 37 23 23 23 8 11 48 14 6 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AW531843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF560180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM387384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB577697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB614294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB732296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK595287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO565747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR469995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM109160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000009080   ⟹   ENSRNOP00000009080
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl672,389,703 - 72,512,459 (-)Ensembl
Rnor_6.0 Ensembl675,793,960 - 75,874,235 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098593   ⟹   ENSRNOP00000079177
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl672,389,703 - 72,483,094 (-)Ensembl
RefSeq Acc Id: NM_001170568   ⟹   NP_001164039
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2672,389,701 - 72,482,626 (-)NCBI
Rnor_6.0675,793,223 - 75,873,854 (-)NCBI
Rnor_5.0685,333,774 - 85,412,648 (-)NCBI
Celera671,233,873 - 71,314,047 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112220   ⟹   XP_038968148
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2672,389,701 - 72,483,167 (-)NCBI
RefSeq Acc Id: XM_039112221   ⟹   XP_038968149
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2672,389,701 - 72,483,121 (-)NCBI
RefSeq Acc Id: XM_039112222   ⟹   XP_038968150
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2672,389,701 - 72,512,472 (-)NCBI
RefSeq Acc Id: XM_039112223   ⟹   XP_038968151
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2672,389,701 - 72,512,516 (-)NCBI
RefSeq Acc Id: XM_039112224   ⟹   XP_038968152
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2672,389,701 - 72,483,167 (-)NCBI
RefSeq Acc Id: XM_039112225   ⟹   XP_038968153
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2672,389,701 - 72,483,165 (-)NCBI
RefSeq Acc Id: XM_039112226   ⟹   XP_038968154
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2672,389,701 - 72,425,835 (-)NCBI
RefSeq Acc Id: XM_039112227   ⟹   XP_038968155
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2672,389,701 - 72,425,835 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001164039   ⟸   NM_001170568
- UniProtKB: F1M4U9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000009080   ⟸   ENSRNOT00000009080
RefSeq Acc Id: XP_038968151   ⟸   XM_039112223
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968150   ⟸   XM_039112222
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968152   ⟸   XM_039112224
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968148   ⟸   XM_039112220
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968153   ⟸   XM_039112225
- Peptide Label: isoform X3
- UniProtKB: A0A8I6G4X5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968149   ⟸   XM_039112221
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968155   ⟸   XM_039112227
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038968154   ⟸   XM_039112226
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000079177   ⟸   ENSRNOT00000098593
Protein Domains
Bromo   DDT   PHD-type   WAC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M4U9-F1-model_v2 AlphaFold F1M4U9 1-1521 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306199 AgrOrtholog
BioCyc Gene G2FUF-37499 BioCyc
Ensembl Genes ENSRNOG00000006828 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000009080 ENTREZGENE
  ENSRNOP00000009080.7 UniProtKB/TrEMBL
  ENSRNOP00000079177 ENTREZGENE
  ENSRNOP00000079177.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009080 ENTREZGENE
  ENSRNOT00000009080.8 UniProtKB/TrEMBL
  ENSRNOT00000098593 ENTREZGENE
  ENSRNOT00000098593.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro Acf1_Bromo UniProtKB/TrEMBL
  BAZ1A UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  DDT_dom_superfamily UniProtKB/TrEMBL
  WHIM1_dom UniProtKB/TrEMBL
  WHIM2_dom UniProtKB/TrEMBL
  WSTF_Acf1_Cbp146 UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene 314126 ENTREZGENE
PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A UniProtKB/TrEMBL
  BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  WAC_Acf1_DNA_bd UniProtKB/TrEMBL
  WHIM1 UniProtKB/TrEMBL
  WSD UniProtKB/TrEMBL
PhenoGen Baz1a PhenoGen
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  WAC UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART BROMO UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
Superfamily-SCOP Bromodomain UniProtKB/TrEMBL
  FYVE_PHD_ZnF UniProtKB/TrEMBL
UniProt A0A8I6G4X5 ENTREZGENE, UniProtKB/TrEMBL
  F1M4U9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Baz1a  bromodomain adjacent to zinc finger domain, 1A   Baz1a_predicted  bromodomain adjacent to zinc finger domain, 1A (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Baz1a_predicted  bromodomain adjacent to zinc finger domain, 1A (predicted)      Symbol and Name status set to approved 70820 APPROVED